jgi.p|Nanoce1779_2|250192, mRNA_9022 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|250192
Unique NamemRNA_9022
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length763
Alignment locationscaffold_30:227851..228613 +

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Properties
Property NameValue
TranscriptId250278
TrackFilteredModels2
ProteinId250192
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:227851..228613 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|250192gene_9022Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|250192mRNA_9022-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9022CDS_9022Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9022 ID=mRNA_9022|Name=jgi.p|Nanoce1779_2|250192|organism=Nannochloropsis oceanica|type=mRNA|length=763bp
AACACTAGTTGTATACTATGGATTGCTGTTCATTTCTTCTTACAGAAGTC
TTTCAGCCGACATACACACGCCGACACATCCCTCAAGATCCCGCCTCACA
TGCCCTCCAGTCATCCTACACAAATTAATAGTTCGTGTATTTTCCTATCC
AAAAGGACCGACCACAAGTGTCTTACTTTGCCCAAATGGCAAGGGCGGGC
AGGAGGGTTGTCTGCCTTGTTGCTCTCAATGAAGTGTAAACAAGACGAGC
ACTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCATAT
TTTTCTCCTTTTCCTCATTTCCCGCCTGTTTTATCTGTACATGTCAAAGT
TCCGGACTGCCAAGGATTCGCCGGAGCCGTGCTTCATAGCATGTACATTC
CCCTCCTCCTCTTGCTGCTCCTCTTGCGTCTGCTCCTGTACCAGGTTCTC
CCTTTGGTCCTCCTGCACCCAGTGCCTACTTATCATTCCCTTTTTTGTAG
CCAAGGCTGCTTCTACTGCGCCTTTCTCAATCTCGTTGTTGTTGGACTTC
TCGCTTCTGCTGCTTGCGTTTTACAATTGCTCCTTTCCTTCGTAGCTTTT
GCAAAAAAGAAAACTGCACCATAGTGACAGCAACGTGCCCGTGGATCGTC
AATCAATGAATCTGAAGTATCAGGTGAGATGGCGTACAGCCTGTTTTATA
ATGTCTACAGTGTGATTGGCTGGTAATGACCGTACACCTTATTTTTTTGC
GCGAGCTGGAACC
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protein sequence of jgi.p|Nanoce1779_2|250192

>mRNA_9022-protein ID=mRNA_9022-protein|Name=jgi.p|Nanoce1779_2|250192|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MPSSHPTQINSSCIFLSKRTDHKCLTLPKWQGRAGGLSALLLSMKCKQDE
HFFFSSSSSSSSSSFSYFSPFPHFPPVLSVHVKVPDCQGFAGAVLHSMYI
PLLLLLLLLRLLLYQVLPLVLLHPVPTYHSLFCSQGCFYCAFLNLVVVGL
LASAACVLQLLLSFVAFAKKKTAP*
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mRNA from alignment at scaffold_30:227851..228613+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9022 ID=mRNA_9022|Name=jgi.p|Nanoce1779_2|250192|organism=Nannochloropsis oceanica|type=mRNA|length=763bp|location=Sequence derived from alignment at scaffold_30:227851..228613+ (Nannochloropsis oceanica)
AACACTAGTTGTATACTATGGATTGCTGTTCATTTCTTCTTACAGAAGTC
TTTCAGCCGACATACACACGCCGACACATCCCTCAAGATCCCGCCTCACA
TGCCCTCCAGTCATCCTACACAAATTAATAGTTCGTGTATTTTCCTATCC
AAAAGGACCGACCACAAGTGTCTTACTTTGCCCAAATGGCAAGGGCGGGC
AGGAGGGTTGTCTGCCTTGTTGCTCTCAATGAAGTGTAAACAAGACGAGC
ACTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCATAT
TTTTCTCCTTTTCCTCATTTCCCGCCTGTTTTATCTGTACATGTCAAAGT
TCCGGACTGCCAAGGATTCGCCGGAGCCGTGCTTCATAGCATGTACATTC
CCCTCCTCCTCTTGCTGCTCCTCTTGCGTCTGCTCCTGTACCAGGTTCTC
CCTTTGGTCCTCCTGCACCCAGTGCCTACTTATCATTCCCTTTTTTGTAG
CCAAGGCTGCTTCTACTGCGCCTTTCTCAATCTCGTTGTTGTTGGACTTC
TCGCTTCTGCTGCTTGCGTTTTACAATTGCTCCTTTCCTTCGTAGCTTTT
GCAAAAAAGAAAACTGCACCATAGTGACAGCAACGTGCCCGTGGATCGTC
AATCAATGAATCTGAAGTATCAGGTGAGATGGCGTACAGCCTGTTTTATA
ATGTCTACAGTGTGATTGGCTGGTAATGACCGTACACCTTATTTTTTTGC
GCGAGCTGGAACC
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Coding sequence (CDS) from alignment at scaffold_30:227851..228613+

>mRNA_9022 ID=mRNA_9022|Name=jgi.p|Nanoce1779_2|250192|organism=Nannochloropsis oceanica|type=CDS|length=525bp|location=Sequence derived from alignment at scaffold_30:227851..228613+ (Nannochloropsis oceanica)
ATGCCCTCCAGTCATCCTACACAAATTAATAGTTCGTGTATTTTCCTATC
CAAAAGGACCGACCACAAGTGTCTTACTTTGCCCAAATGGCAAGGGCGGG
CAGGAGGGTTGTCTGCCTTGTTGCTCTCAATGAAGTGTAAACAAGACGAG
CACTTCTTCTTCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCATA
TTTTTCTCCTTTTCCTCATTTCCCGCCTGTTTTATCTGTACATGTCAAAG
TTCCGGACTGCCAAGGATTCGCCGGAGCCGTGCTTCATAGCATGTACATT
CCCCTCCTCCTCTTGCTGCTCCTCTTGCGTCTGCTCCTGTACCAGGTTCT
CCCTTTGGTCCTCCTGCACCCAGTGCCTACTTATCATTCCCTTTTTTGTA
GCCAAGGCTGCTTCTACTGCGCCTTTCTCAATCTCGTTGTTGTTGGACTT
CTCGCTTCTGCTGCTTGCGTTTTACAATTGCTCCTTTCCTTCGTAGCTTT
TGCAAAAAAGAAAACTGCACCATAG
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Synonyms
Publications