jgi.p|Nanoce1779_2|604939, mRNA_9020 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604939
Unique NamemRNA_9020
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1038
Alignment locationscaffold_30:222891..224181 -

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Properties
Property NameValue
TranscriptId605025
TrackFilteredModels2
ProteinId604939
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:222891..224181 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604939gene_9020Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604939mRNA_9020-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9020CDS_9020Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9020 ID=mRNA_9020|Name=jgi.p|Nanoce1779_2|604939|organism=Nannochloropsis oceanica|type=mRNA|length=1038bp
AACACCAGCTGGGAGGACGAAAAACAGCTATGTCGTCTCGCCGTCCAAAA
GCTGAACCAATTGAAGCCAAGGCCACGCTTTGCCATAGTATGTGGTGATT
TAGTGCATCACTTTCCAGGCATGTATCCCGACACCGACCCCAGTATCCGA
GAAAGGCAAATAGCTGATTTCAAGGCCATCATGGGCGAGATACACCCTGC
CATCCCTCTCCTCTGCGTGTGCGGAAACCACGACGTAGGCAATCGTCCCA
CAGCTTCTTCTATAGAGGCATTTAAAAAAGATTTCGGTGATGATTATTTT
GTCTTCTGGATTGACAAGATGAAGGGGATCGTGCTGAATACCAATTTGTA
CTTTGATCCTTCCGCGGCTCCAGACGAATACAATCAGCAACACTCCTGGC
TCCGCGCCGAGTTTGCCGTAGCCCGAGCGCAAGGCGCCCGTCATATCTTC
CTCTTCGGCCATCATCCCCTCTTTCTCTTCCATGACGACGAGGATGAGGA
CGAAGAGGCACTTGGCTCATCCTCCTTCACCACCAAGGCGGGAAACAGTG
TCTCGATCCCCAATACATACTTTCATCTGCCGCGGGCGAGACGGGAAGAA
ATTCTCGAATTGATGCGACAATACGGGAGCAGGTAGGAAGTAGAAGAAAG
AATTTACGAAAAGACGAAGAGATAAACAGATCTAAATAAACAATTAAAAG
GACAAAAAATATAAGCAAAGTGAGGAACGTTTGTAAATTAAAAATGAAAG
CCAGGACAGCTACGAACTTATCCCTTCCCTCCTTCCCCGCAGCCACTTCT
TCTGTGGTCATTGGCACCAAAACGGCATCGTTCCCAGCGAAAGATACAGG
ATGGAGAACGTTGTCACCAGTGCAGTGGGTCTCCAGATAGGTCGGGATAA
GAGCGGGTTCCGATTGGTCAAGGTTTTTGAGGTAAGGAGGGGGGGATGGA
GGGAGAAAGGCTGGACGAGGTTGCTTACTCTCGTTTTTTTTTCAACCTTT
ACTTTCATTATACTTAGGATGCCACTGTGCACAAGTAC
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protein sequence of jgi.p|Nanoce1779_2|604939

>mRNA_9020-protein ID=mRNA_9020-protein|Name=jgi.p|Nanoce1779_2|604939|organism=Nannochloropsis oceanica|type=polypeptide|length=172bp
MYPDTDPSIRERQIADFKAIMGEIHPAIPLLCVCGNHDVGNRPTASSIEA
FKKDFGDDYFVFWIDKMKGIVLNTNLYFDPSAAPDEYNQQHSWLRAEFAV
ARAQGARHIFLFGHHPLFLFHDDEDEDEEALGSSSFTTKAGNSVSIPNTY
FHLPRARREEILELMRQYGSR*
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mRNA from alignment at scaffold_30:222891..224181-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9020 ID=mRNA_9020|Name=jgi.p|Nanoce1779_2|604939|organism=Nannochloropsis oceanica|type=mRNA|length=1291bp|location=Sequence derived from alignment at scaffold_30:222891..224181- (Nannochloropsis oceanica)
AACACCAGCTGGGAGGACGAAAAACAGCTATGTCGTCTCGCCGTCCAAAA
GCTGAACCAATTGAAGCCAAGGCCACGCTTTGCCATAGTATGTGGTGATT
TAGTGCATCACTTTCCAGGCATGTATCCCGACACCGACCCCAGTATCCGA
GAAAGGCAAATAGCTGATTTCAAGGTAAGCGTGCCCATTATATCTTTTCA
TTCCTCTTTGTTCTGCGGCTGTGGTCACTTCCTGTCTTTAAAGCGTGAAT
GACGAAATATCTTACACCCTCCCTTCCTCTCTCTCTACCTCCTTTGAGGC
CATCATGGGCGAGATACACCCTGCCATCCCTCTCCTCTGCGTGTGCGGAA
ACCACGACGTAGGCAATCGTCCCACAGCTTCTTCTATAGAGGCATTTAAA
AAAGATTTCGGTGATGATTATTTTGTCTTCTGGATTGACAAGATGAAGGG
GATCGTGCTGAATACCAATTTGTACTTTGATCCTTCCGCGGTACGTGATA
TTCAAACTTGTGCACGTTCCCTGCTCTACAAGCAACAGGTGCGAATGAAT
CACTTGTTGTCGGGGCGTGAGAAGATGAGCAGCTAATGGATGTCATACCC
CCACACCCCGGGCTCCCAGGCTCCAGACGAATACAATCAGCAACACTCCT
GGCTCCGCGCCGAGTTTGCCGTAGCCCGAGCGCAAGGCGCCCGTCATATC
TTCCTCTTCGGCCATCATCCCCTCTTTCTCTTCCATGACGACGAGGATGA
GGACGAAGAGGCACTTGGCTCATCCTCCTTCACCACCAAGGCGGGAAACA
GTGTCTCGATCCCCAATACATACTTTCATCTGCCGCGGGCGAGACGGGAA
GAAATTCTCGAATTGATGCGACAATACGGGAGCAGGTAGGAAGTAGAAGA
AAGAATTTACGAAAAGACGAAGAGATAAACAGATCTAAATAAACAATTAA
AAGGACAAAAAATATAAGCAAAGTGAGGAACGTTTGTAAATTAAAAATGA
AAGCCAGGACAGCTACGAACTTATCCCTTCCCTCCTTCCCCGCAGCCACT
TCTTCTGTGGTCATTGGCACCAAAACGGCATCGTTCCCAGCGAAAGATAC
AGGATGGAGAACGTTGTCACCAGTGCAGTGGGTCTCCAGATAGGTCGGGA
TAAGAGCGGGTTCCGATTGGTCAAGGTTTTTGAGGTAAGGAGGGGGGGAT
GGAGGGAGAAAGGCTGGACGAGGTTGCTTACTCTCGTTTTTTTTTCAACC
TTTACTTTCATTATACTTAGGATGCCACTGTGCACAAGTAC
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Coding sequence (CDS) from alignment at scaffold_30:222891..224181-

>mRNA_9020 ID=mRNA_9020|Name=jgi.p|Nanoce1779_2|604939|organism=Nannochloropsis oceanica|type=CDS|length=1548bp|location=Sequence derived from alignment at scaffold_30:222891..224181- (Nannochloropsis oceanica)
GCTCCAGACGAATACAATCAGCAACACTCCTGGCTCCGCGCCGAGTTTGC
CGTAGCCCGAGCGCAAGGCGCCCGTCATATCTTCCTCTTCGGCCATCATC
CCCTCTTTCTCTTCCATGACGACGAGGATGAGGACGAAGAGGCACTTGGC
TCATCCTCCTTCACCACCAAGGCGGGAAACAGTGTCTCGATCCCCAATAC
ATACTTTCATCTGCCGCGGGCGAGACGGGAAGAAATTCTCGAATTGATGC
GACAATACGGGAGCAGGTAGGCCATCATGGGCGAGATACACCCTGCCATC
CCTCTCCTCTGCGTGTGCGGAAACCACGACGTAGGCAATCGTCCCACAGC
TTCTTCTATAGAGGCATTTAAAAAAGATTTCGGTGATGATTATTTTGTCT
TCTGGATTGACAAGATGAAGGGGATCGTGCTGAATACCAATTTGTACTTT
GATCCTTCCGCGATGTATCCCGACACCGACCCCAGTATCCGAGAAAGGCA
AATAGCTGATTTCAAGGCTCCAGACGAATACAATCAGCAACACTCCTGGC
TCCGCGCCGAGTTTGCCGTAGCCCGAGCGCAAGGCGCCCGTCATATCTTC
CTCTTCGGCCATCATCCCCTCTTTCTCTTCCATGACGACGAGGATGAGGA
CGAAGAGGCACTTGGCTCATCCTCCTTCACCACCAAGGCGGGAAACAGTG
TCTCGATCCCCAATACATACTTTCATCTGCCGCGGGCGAGACGGGAAGAA
ATTCTCGAATTGATGCGACAATACGGGAGCAGGTAGGCCATCATGGGCGA
GATACACCCTGCCATCCCTCTCCTCTGCGTGTGCGGAAACCACGACGTAG
GCAATCGTCCCACAGCTTCTTCTATAGAGGCATTTAAAAAAGATTTCGGT
GATGATTATTTTGTCTTCTGGATTGACAAGATGAAGGGGATCGTGCTGAA
TACCAATTTGTACTTTGATCCTTCCGCGATGTATCCCGACACCGACCCCA
GTATCCGAGAAAGGCAAATAGCTGATTTCAAGGCTCCAGACGAATACAAT
CAGCAACACTCCTGGCTCCGCGCCGAGTTTGCCGTAGCCCGAGCGCAAGG
CGCCCGTCATATCTTCCTCTTCGGCCATCATCCCCTCTTTCTCTTCCATG
ACGACGAGGATGAGGACGAAGAGGCACTTGGCTCATCCTCCTTCACCACC
AAGGCGGGAAACAGTGTCTCGATCCCCAATACATACTTTCATCTGCCGCG
GGCGAGACGGGAAGAAATTCTCGAATTGATGCGACAATACGGGAGCAGGT
AGGCCATCATGGGCGAGATACACCCTGCCATCCCTCTCCTCTGCGTGTGC
GGAAACCACGACGTAGGCAATCGTCCCACAGCTTCTTCTATAGAGGCATT
TAAAAAAGATTTCGGTGATGATTATTTTGTCTTCTGGATTGACAAGATGA
AGGGGATCGTGCTGAATACCAATTTGTACTTTGATCCTTCCGCGATGTAT
CCCGACACCGACCCCAGTATCCGAGAAAGGCAAATAGCTGATTTCAAG
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Synonyms
Publications