jgi.p|Nanoce1779_2|560075, mRNA_9018 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|560075
Unique NamemRNA_9018
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1431
Alignment locationscaffold_30:218543..220322 -

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Properties
Property NameValue
TranscriptId560161
TrackFilteredModels2
ProteinId560075
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:218543..220322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|560075gene_9018Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|560075mRNA_9018-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9018CDS_9018Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9018 ID=mRNA_9018|Name=jgi.p|Nanoce1779_2|560075|organism=Nannochloropsis oceanica|type=mRNA|length=1431bp
CCCCTTTTCACTTACCACCATCCACGACAGAGACACACGCGCGCACAAAC
ACACACAAACATACACATATATATATACATATATATACGTAGAGGAGCAT
CTGGAGCACTGCGAAACAGACAACAGCACGACTGCACTTGTCCCTGCAGC
CTTGGGCCGGTCTTCTGCTCACCTTGCATAAAGCAACGCACAGCAACCCA
GCCACCTCGCATCCATCCGCCGCGTAGTGTCTTAGCTACGCTTCCCCCCT
CCCTCCTTCACATCGACACAGATATTAAAGGCGCTGCATCCCCAAATTGC
GGGTGTCCTTCTCCTTCCTATTCTCCCCCTGGTGTACTTACTTAGCTCCA
GAGAGTGGTGCGTACGGCACCGCCGCCGCTCTCACGGGGTCGCCGCGTAG
GAGGAAGAAGGCGACAGACAGAGCAAGACATACCGAAAGAGCAGCACATA
TACACACGGCATCATGAACTCTTCATCAGAGTCACGCAACCCACAAGGTG
CAGGGGGGAGAGAAGCCGGCGGAGCAGGGGTTGGGGATGTAGGAAAAGAC
AAGAGGCCGCTTTCGGCCCGTCTTGGCATTCGCCTCGCCTTGGACCCGGA
GGAAGGGAGGGAGGAAGGGCAGGGGGGTAGTTGTCGAACGGGTAGTCCGT
TGCGGGAGGAGGATGATGGAGGGGGGAAAGTGACCAGTTGCAGCAGTAGC
AGGAGAACGACGACAAGTACTAGGGGACACGGAAGCAACAGCAGTAGCAG
CAGCACCAGCAGTGGTAGTGGTGGTAGTAGGGCGGAGAGGGAGGAGAAGG
TAGAGACGCCAGTGACAAGGAGAGCTTTGGAGGCGTCGAGGAAGGTGGTC
TCGAAGTTGAAGGCGTCAGGGATCAACTTGCTGGCGTTGGATTTTGATAT
GACGGTATTAGATATCCATACCGGCGGACAGTGGGCAGGAAAAGCCTCGG
AGCTCTGTTCGCACATCCGCCCCTTTTTTTCATCCCTCATCCTCGAAGCC
GGTCGGGAGGGCATTCACATGGCTGTCGTCACGTTTTCACCCCAGACGGG
CATGATCCGCGAGGTACTCAAGGAGAAGTTTGGCGAGCCCCTTGCGTCGC
TGATTCCCGTGCGAGGGGCGGACGGCTCCTGGGTTTACTCGGGCAAAGGA
TCTCAAAAAGGGAAACAAGGGCACATGGCCAGCGCCGTCGAAGAACTGTG
CGCCCGTTGTCCTTCCCTAGTCATCACCAGGGGAAGCACCGTCTTGATTG
ATGACGATCGATCGAACATCGACGTGGCCCTCAAGGCGGGTGTGCGTGCT
TTCTGGCTCGACCCCTGCCGGCCCGAGGAGGTGGTAGAGAGCCTGTTGGG
AGGGATGGGAATGTCCTCCCTCCCTCCTTCCCTCCCTCCCTCATTTTCGG
AGGAGGGAGAGGGTTAGGTGGGGAGTGAGGG
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protein sequence of jgi.p|Nanoce1779_2|560075

>mRNA_9018-protein ID=mRNA_9018-protein|Name=jgi.p|Nanoce1779_2|560075|organism=Nannochloropsis oceanica|type=polypeptide|length=318bp
MNSSSESRNPQGAGGREAGGAGVGDVGKDKRPLSARLGIRLALDPEEGRE
EGQGGSCRTGSPLREEDDGGGKVTSCSSSRRTTTSTRGHGSNSSSSSTSS
GSGGSRAEREEKVETPVTRRALEASRKVVSKLKASGINLLALDFDMTVLD
IHTGGQWAGKASELCSHIRPFFSSLILEAGREGIHMAVVTFSPQTGMIRE
VLKEKFGEPLASLIPVRGADGSWVYSGKGSQKGKQGHMASAVEELCARCP
SLVITRGSTVLIDDDRSNIDVALKAGVRAFWLDPCRPEEVVESLLGGMGM
SSLPPSLPPSFSEEGEG*
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mRNA from alignment at scaffold_30:218543..220322-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9018 ID=mRNA_9018|Name=jgi.p|Nanoce1779_2|560075|organism=Nannochloropsis oceanica|type=mRNA|length=1780bp|location=Sequence derived from alignment at scaffold_30:218543..220322- (Nannochloropsis oceanica)
CCCCTTTTCACTTACCACCATCCACGACAGAGACACACGCGCGCACAAAC
ACACACAAACATACACATATATATATACATATATATACGTAGAGGAGCAT
CTGGAGCACTGCGAAACAGACAACAGCACGACTGCACTTGTCCCTGCAGC
CTTGGGCCGGTCTTCTGCTCACCTTGCATAAAGCAACGCACAGCAACCCA
GCCACCTCGCATCCATCCGCCGCGTAGTGTCTTAGCTACGCTTCCCCCCT
CCCTCCTTCACATCGACACAGATATTAAAGGCGCTGCATCCCCAAATTGC
GGGTGTCCTTCTCCTTCCTATTCTCCCCCTGGTGTACTTACTTAGCTCCA
GAGAGTGGTGCGTACGGCACCGCCGCCGCTCTCACGGGGTCGCCGCGTAG
GAGGAAGAAGGCGACAGACAGAGCAAGACATACCGAAAGAGCAGCACATA
TACACACGGCATCATGAACTCTTCATCAGAGTCACGCAACCCACAAGGTG
CAGGGGGGAGAGAAGCCGGCGGAGCAGGGGTTGGGGATGTAGGAAAAGAC
AAGAGGCCGCTTTCGGCCCGTCTTGGCATTCGCCTCGCCTTGGACCCGGA
GGAAGGGAGGGAGGAAGGGCAGGGGGGTAGTTGTCGAACGGGTAGTCCGT
TGCGGGAGGAGGATGATGGAGGGGGGAAAGTGACCAGTTGCAGCAGTAGC
AGGAGAACGACGACAAGTACTAGGGGACACGGAAGCAACAGCAGTAGCAG
CAGCACCAGCAGTGGTAGTGGTGGTAGTAGGGCGGAGAGGGAGGAGAAGG
TAGAGACGCCAGTGACAAGGAGAGCTTTGGAGGCGTCGAGGAAGGTGGTC
TCGAAGTTGAAGGCGTCAGGGATCAACTTGCTGGCGTTGGATTTTGATAT
GACGGTATTAGATATCCATACCGGTAAGTGTTGTATTATTTGTATTCGTT
TTCTCAATAAGTTGTGTATATATACATATGTATAAAGGTATACTCTTTCT
TTGGCTCAGTAATGCATGGGTTCTTTTTTTGTGTTGACGCGCATTACAGC
CCTCTAGTTTCATCTAAATTACCATACACGCGGACTCATCCCTTCTACCA
CCACCACCACTGATGATCATCACAATTAACAGGCGGACAGTGGGCAGGAA
AAGCCTCGGAGCTCTGTTCGCACATCCGCCCCTTTTTTTCATCCCTCATC
CTCGAAGCCGGTCGGGAGGGCATTCACATGGCTGTCGTCACGTTTTCACC
CCAGACGGGCATGATCCGCGAGGTACTCAAGGAGAAGTTTGGTACGTCCC
CTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCCTGCG
CTGAAGACACCCAAACGTGTGAATCAAACTGCAAATAATCGAACCCTATT
TCAAACTCCCCACCCCCCACCACACACACAGGCGAGCCCCTTGCGTCGCT
GATTCCCGTGCGAGGGGCGGACGGCTCCTGGGTTTACTCGGGCAAAGGAT
CTCAAAAAGGGAAACAAGGGCACATGGCCAGCGCCGTCGAAGAACTGTGC
GCCCGTTGTCCTTCCCTAGTCATCACCAGGGGAAGCACCGTCTTGATTGA
TGACGATCGATCGAACATCGACGTGGCCCTCAAGGCGGGTGTGCGTGCTT
TCTGGCTCGACCCCTGCCGGCCCGAGGAGGTGGTAGAGAGCCTGTTGGGA
GGGATGGGAATGTCCTCCCTCCCTCCTTCCCTCCCTCCCTCATTTTCGGA
GGAGGGAGAGGGTTAGGTGGGGAGTGAGGG
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Coding sequence (CDS) from alignment at scaffold_30:218543..220322-

>mRNA_9018 ID=mRNA_9018|Name=jgi.p|Nanoce1779_2|560075|organism=Nannochloropsis oceanica|type=CDS|length=2862bp|location=Sequence derived from alignment at scaffold_30:218543..220322- (Nannochloropsis oceanica)
GCGAGCCCCTTGCGTCGCTGATTCCCGTGCGAGGGGCGGACGGCTCCTGG
GTTTACTCGGGCAAAGGATCTCAAAAAGGGAAACAAGGGCACATGGCCAG
CGCCGTCGAAGAACTGTGCGCCCGTTGTCCTTCCCTAGTCATCACCAGGG
GAAGCACCGTCTTGATTGATGACGATCGATCGAACATCGACGTGGCCCTC
AAGGCGGGTGTGCGTGCTTTCTGGCTCGACCCCTGCCGGCCCGAGGAGGT
GGTAGAGAGCCTGTTGGGAGGGATGGGAATGTCCTCCCTCCCTCCTTCCC
TCCCTCCCTCATTTTCGGAGGAGGGAGAGGGTTAGGCGGACAGTGGGCAG
GAAAAGCCTCGGAGCTCTGTTCGCACATCCGCCCCTTTTTTTCATCCCTC
ATCCTCGAAGCCGGTCGGGAGGGCATTCACATGGCTGTCGTCACGTTTTC
ACCCCAGACGGGCATGATCCGCGAGGTACTCAAGGAGAAGTTTGATGAAC
TCTTCATCAGAGTCACGCAACCCACAAGGTGCAGGGGGGAGAGAAGCCGG
CGGAGCAGGGGTTGGGGATGTAGGAAAAGACAAGAGGCCGCTTTCGGCCC
GTCTTGGCATTCGCCTCGCCTTGGACCCGGAGGAAGGGAGGGAGGAAGGG
CAGGGGGGTAGTTGTCGAACGGGTAGTCCGTTGCGGGAGGAGGATGATGG
AGGGGGGAAAGTGACCAGTTGCAGCAGTAGCAGGAGAACGACGACAAGTA
CTAGGGGACACGGAAGCAACAGCAGTAGCAGCAGCACCAGCAGTGGTAGT
GGTGGTAGTAGGGCGGAGAGGGAGGAGAAGGTAGAGACGCCAGTGACAAG
GAGAGCTTTGGAGGCGTCGAGGAAGGTGGTCTCGAAGTTGAAGGCGTCAG
GGATCAACTTGCTGGCGTTGGATTTTGATATGACGGTATTAGATATCCAT
ACCGGCGAGCCCCTTGCGTCGCTGATTCCCGTGCGAGGGGCGGACGGCTC
CTGGGTTTACTCGGGCAAAGGATCTCAAAAAGGGAAACAAGGGCACATGG
CCAGCGCCGTCGAAGAACTGTGCGCCCGTTGTCCTTCCCTAGTCATCACC
AGGGGAAGCACCGTCTTGATTGATGACGATCGATCGAACATCGACGTGGC
CCTCAAGGCGGGTGTGCGTGCTTTCTGGCTCGACCCCTGCCGGCCCGAGG
AGGTGGTAGAGAGCCTGTTGGGAGGGATGGGAATGTCCTCCCTCCCTCCT
TCCCTCCCTCCCTCATTTTCGGAGGAGGGAGAGGGTTAGGCGGACAGTGG
GCAGGAAAAGCCTCGGAGCTCTGTTCGCACATCCGCCCCTTTTTTTCATC
CCTCATCCTCGAAGCCGGTCGGGAGGGCATTCACATGGCTGTCGTCACGT
TTTCACCCCAGACGGGCATGATCCGCGAGGTACTCAAGGAGAAGTTTGAT
GAACTCTTCATCAGAGTCACGCAACCCACAAGGTGCAGGGGGGAGAGAAG
CCGGCGGAGCAGGGGTTGGGGATGTAGGAAAAGACAAGAGGCCGCTTTCG
GCCCGTCTTGGCATTCGCCTCGCCTTGGACCCGGAGGAAGGGAGGGAGGA
AGGGCAGGGGGGTAGTTGTCGAACGGGTAGTCCGTTGCGGGAGGAGGATG
ATGGAGGGGGGAAAGTGACCAGTTGCAGCAGTAGCAGGAGAACGACGACA
AGTACTAGGGGACACGGAAGCAACAGCAGTAGCAGCAGCACCAGCAGTGG
TAGTGGTGGTAGTAGGGCGGAGAGGGAGGAGAAGGTAGAGACGCCAGTGA
CAAGGAGAGCTTTGGAGGCGTCGAGGAAGGTGGTCTCGAAGTTGAAGGCG
TCAGGGATCAACTTGCTGGCGTTGGATTTTGATATGACGGTATTAGATAT
CCATACCGGCGAGCCCCTTGCGTCGCTGATTCCCGTGCGAGGGGCGGACG
GCTCCTGGGTTTACTCGGGCAAAGGATCTCAAAAAGGGAAACAAGGGCAC
ATGGCCAGCGCCGTCGAAGAACTGTGCGCCCGTTGTCCTTCCCTAGTCAT
CACCAGGGGAAGCACCGTCTTGATTGATGACGATCGATCGAACATCGACG
TGGCCCTCAAGGCGGGTGTGCGTGCTTTCTGGCTCGACCCCTGCCGGCCC
GAGGAGGTGGTAGAGAGCCTGTTGGGAGGGATGGGAATGTCCTCCCTCCC
TCCTTCCCTCCCTCCCTCATTTTCGGAGGAGGGAGAGGGTTAGGCGGACA
GTGGGCAGGAAAAGCCTCGGAGCTCTGTTCGCACATCCGCCCCTTTTTTT
CATCCCTCATCCTCGAAGCCGGTCGGGAGGGCATTCACATGGCTGTCGTC
ACGTTTTCACCCCAGACGGGCATGATCCGCGAGGTACTCAAGGAGAAGTT
TGATGAACTCTTCATCAGAGTCACGCAACCCACAAGGTGCAGGGGGGAGA
GAAGCCGGCGGAGCAGGGGTTGGGGATGTAGGAAAAGACAAGAGGCCGCT
TTCGGCCCGTCTTGGCATTCGCCTCGCCTTGGACCCGGAGGAAGGGAGGG
AGGAAGGGCAGGGGGGTAGTTGTCGAACGGGTAGTCCGTTGCGGGAGGAG
GATGATGGAGGGGGGAAAGTGACCAGTTGCAGCAGTAGCAGGAGAACGAC
GACAAGTACTAGGGGACACGGAAGCAACAGCAGTAGCAGCAGCACCAGCA
GTGGTAGTGGTGGTAGTAGGGCGGAGAGGGAGGAGAAGGTAGAGACGCCA
GTGACAAGGAGAGCTTTGGAGGCGTCGAGGAAGGTGGTCTCGAAGTTGAA
GGCGTCAGGGATCAACTTGCTGGCGTTGGATTTTGATATGACGGTATTAG
ATATCCATACCG
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Synonyms
Publications