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Properties
Property Name | Value |
TranscriptId | 633356 |
Track | FilteredModels2 |
ProteinId | 633270 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_30 | supercontig | scaffold_30:214919..218542 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9017 ID=mRNA_9017|Name=jgi.p|Nanoce1779_2|633270|organism=Nannochloropsis oceanica|type=mRNA|length=1807bp ACAGACGGAGACAAATAAAATTGATTGCCAGTGCTACTTATTCTCCTCCT CCCGTTCTGCGGCGTGCAGCAAGCAGCAGGGAAGACAGCTAGCGCTCAAG CACCCTTGCTTCATGATCACAGCAGCCAGTGCTAGCCACATGATGAACGA GGAGGCACTGGATCATCACGAGCAGCAGTACCACGAACAGGAGGAGGCAG AGGAGGAGGGGATTCGCGTGGAGGTAGAGGGACGCTTGGGGGTAAATGAG ATACTCCCTCCTTTTTCCGCCGAGGAGGACGACGACGACGGGGAGGCAGC GGCAGCAGACTTGCTAGAGGAGAGAGGGGAGGAGGAAGGAGGGCATGACG GAGATGAAGAGGATGCGCACCAACCTCATAACGCGACGGCTGCAGATGAT ACCATCTTCGAAGCTGCGGGAGAGGGCGGAGAGGAGGGGGAAGAGGAAGG GGGAGAAGGAGTAGTGATGCAGGACGAAGGGGTGGAGGGATGCGTGGAGG GTTTGAACGAGCGTCATTATTGGATGGAGGGTAGGGAGATAGTACGACTG TTCTGGGATAGGGCAGGGATGGAGGAGGAGGAGGATGGGAGGGAGGGAGG GAAGGAGGGGTTTGGAAGGGCGGTAAAGGAGGGAGTGAGGGAGGGCGTGT TGTTCTTGTTGGACCCGGGGTGTGTGGATGCGGTGGTGCGATGTTGCCTT GGGAAAGGGGGGAGCGAGGGAGGAAGGGTGGGAGGGGAGGAGGGATGGCA TATGCTGGTGGACATTGTGGAGGCAGCTAAAAAGAGGGAAGATAGACGGG CACTGGTGCTTGCAGTGGCGAGGGAGGTGAAGAAGGGGGGAGGGGGTGAG GATGAAGGGGAGGAGGAGGAGGAGGAGGATTTGGAGCAATTTCTGGCGCA GCTGCCGGGGGGGAAAGAGGAGTGGGAGAGGGAGGTCGATATGATGAGGG GGGTGGTTGAGATCGAGGATGAGGAGGAGGGAATGGAGGAGGGAGGGGAG GAGGGAGGGGAGGAGGGAGAAGAGAGGGTGGGAGGAGGAGGAGGAGGTGG AGGGATAGTAAGGAAGAGGGGTGAGGAGGAGGAGGAGGAGGTGCACGTGA TGGAGGGGGAAGAAGGGGAGGAGGGGGAGGGAGAGAGGGAGGAAGAGGGA AAAGGGGATGAGGAGGGCGAGGAAGAGGAGAGAGAGCCGGCTCTGAAGAG GCATCGGTCCTCATGGTCGGAGGCTTCGACCATCTCAAGAGGGTCCCTAC CACCCCGTCGCTGTTGCTTAGGGGACAATAGTGACGCTACGGCGCAACTG AACTGCCCGGCCACGGCGCACTGGTGAATGCATACGGGCTGCGGGAAAAG CCTTGGAATTTTCCAGCCGTATGTTTTTAAATTGGAAGCAGCCCGACTTC AAGAAAAACCATGGCACCCGCATGGGACAAATCAACAGAAAGGTCTAGGC CTGTCCACGGGTGAATGTCGTTCAACTTCTTGTAATCAGGCTGCTTTAAT TTGAACGACCTCTCACCTGCAACGAGGTTTTGACTTTTATGTTGATTTGT CCTATGTAGACAGGCACTCTGGCGTTTTTTGAAATCCGGCTGCTTCAACT TTGAAAAGTCAGTTAAGTTCAGGCTTTTTCAGCAGCCCATACGAATTCAT TCACCAGCCCCCGGTAACCGGAGCAGTTCAAATTCCTCCTCATCCCTCCC ATTCGGCTATCTGCCAACCCCCTCCCTCCGTAGGTCATTCTCTTTCTCTC TCCCAACATCTCTCCACAACGCCGCCTCCCTCTTCCTTTCGCCCTTCCTT CCCCTCT back to topprotein sequence of jgi.p|Nanoce1779_2|633270 >mRNA_9017-protein ID=mRNA_9017-protein|Name=jgi.p|Nanoce1779_2|633270|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp MITAASASHMMNEEALDHHEQQYHEQEEAEEEGIRVEVEGRLGVNEILPP FSAEEDDDDGEAAAADLLEERGEEEGGHDGDEEDAHQPHNATAADDTIFE AAGEGGEEGEEEGGEGVVMQDEGVEGCVEGLNERHYWMEGREIVRLFWDR AGMEEEEDGREGGKEGFGRAVKEGVREGVLFLLDPGCVDAVVRCCLGKGG SEGGRVGGEEGWHMLVDIVEAAKKREDRRALVLAVAREVKKGGGGEDEGE EEEEEDLEQFLAQLPGGKEEWEREVDMMRGVVEIEDEEEGMEEGGEEGGE EGEERVGGGGGGGGIVRKRGEEEEEEVHVMEGEEGEEGEGEREEEGKGDE EGEEEEREPALKRHRSSWSEASTISRGSLPPRRCCLGDNSDATAQLNCPA TAHW* back to topmRNA from alignment at scaffold_30:214919..218542+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9017 ID=mRNA_9017|Name=jgi.p|Nanoce1779_2|633270|organism=Nannochloropsis oceanica|type=mRNA|length=3624bp|location=Sequence derived from alignment at scaffold_30:214919..218542+ (Nannochloropsis oceanica) ACAGACGGAGACAAATAAAATTGATTGCCAGTGCTACTTATTCTCCTCCT
CCCGTTCTGCGGCGTGCAGCAAGCAGCAGGGAAGACAGCTAGCGCTCAAG
CACCCTTGCTTCATGATCACAGCAGCCAGTGCTAGCCACATGATGAACGA
GGAGGCACTGGATCATCACGAGCAGCAGTACCACGAACAGGAGGAGGCAG
AGGAGGAGGGGATTCGCGTGGAGGTAGAGGGACGCTTGGGGGTAAATGAG
ATACTCCCTCCTTTTTCCGCCGAGGAGGACGACGACGACGGGGAGGCAGC
GGCAGCAGACTTGCTAGAGGAGAGAGGGGAGGAGGAAGGAGGGCATGACG
GAGATGAAGAGGATGCGCACCAACCTCATAACGCGACGGCTGCAGATGAT
ACCATCTTCGAAGCTGCGGGAGAGGGCGGAGAGGAGGGGGAAGAGGAAGG
GGGAGAAGGAGTAGTGATGCAGGACGAAGGGGTGGAGGGATGCGTGGAGG
TATGTCTGGAGGGAGGAGGGGAGGAGGAAGGCGCCGAAGGAGAAGGAGGT
GAGGGGGCGATAGTCATAGAGGAAGATACGGAGGAAGAAGCGGTGGCCAC
GCTGCTGGCAGCGACAGGGGAGGAGGAAGAGGGGGGAGGAGATGAAGAGA
AGGAGGAGGAGGAGGAGGAGCAGGAGGAGGAGGAGGAGGTAGAGTATGTA
GCGCACGTGCCAGGGACAGGGGAAGGAGGCCTCTACGACGATGAGGAGGA
AGGGGTGGAAGTAGAGGGAGCAGATTTCACAGCAGCAGCAGCAGCAGCAT
CAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGTGCAGCA
CTGGCTAGAGGAGGTGGAGGACGAGGTCTTGACCGAAGGGAAGGAGGAGA
AGAAGATCTAAGAGACGGCAACGGAAGCTCGATTTCTTCCACCTCGGGCT
CCGCCTCCTCCTCCCCCTCCCCCTCTGCCTCGGCCACCGCTCCTCCCTCC
CTCCCTGCCCCTCCCTCCCCAAACGCATTCCTCCTCCAATGCCTAGAAAA
CGCAACAATTGCCACATGGGCCCCTTCCGAGCTCGGGCGACTCGTGGCCG
TCCTTGCGCAGACAATGCACTGGCACCTCAATCCCCCCCTCCTCCATGCC
TTCCTCTCCTCCCTCCCTCCCTCCCTCCTTCCCCTCCGCACCCTTCCCGC
GTTGCTCAAGGGTTTGAACGAGCGTCATTATTGGATGGAGGGTAGGGAGA
TAGTACGACTGTTCTGGGATAGGGCAGGGATGGAGGAGGAGGAGGATGGG
AGGGAGGGAGGGAAGGAGGGGTTTGGAAGGGCGGTAAAGGAGGGAGTGAG
GGAGGGCGTGTTGTTCTTGTTGGACCCGGGGTGTGTGGATGCGGTGGTGC
GATGTTGCCTTGGGAAAGGGGGGAGCGAGGGAGGAAGGGTGGGAGGGGAG
GAGGGATGGCATATGCTGGTGGACATTGTGGAGGCAGCTAAAAAGAGGGA
AGATAGACGGGCACTGGTGCTTGCAGTGGCGAGGGAGGTGAAGAAGGGGG
GAGGGGGTGAGGATGAAGGGGAGGAGGAGGAGGAGGAGGATTTGGAGCAA
TTTCTGGCGCAGCTGCCGGGGGGGAAAGAGGAGTGGGAGAGGGAGGTCGA
TATGATGAGGGGGGTGGTTGAGATCGAGGATGAGGAGGAGGGAATGGAGG
AGGGAGGGGAGGAGGGAGGGGAGGAGGGAGAAGAGAGGGTGGGAGGAGGA
GGAGGAGGTGGAGGGATAGTAAGGAAGAGGGGTGAGGAGGAGGAGGAGGA
GGTGCACGTGATGGAGGGGGAAGAAGGGGAGGAGGGGGAGGGAGAGAGGG
AGGAAGAGGGAAAAGGGGATGAGGAGGGCGAGGAAGAGGAGAGAGAGCCG
GCTCTGAAGAGGCATCGGGTGGGGGAGGAAGAGGAAGGGGAAGGAGGGAT
GGAGGGAGGGATTGAGGGAGAAGAGAAAGTAGCAGTAGCAGCAATGCTAG
ATGCAACCGAGGGATGAATGCATGTGGCAATAGACAGGTGGCAGCAGCGA
AGACGGGAACAGCTGTGGGACCAACAACAATAACAACAATCACAGAGCAG
CAGCTGCAGCATCATCAGTATGAATTGCAGCAGCAGCAGCAGCAGCAGAA
TCTATAGCAGCAGCAGCATTGTAAGCGGGACGGAATCGGTCAAGGGAGAA
GAGGTGAGAGAAGAGAACAGTGTGCAGATGTTCGGGCAACGAGAGATAAG
TGGCGGGAACGGTATACATACATATCTGAGGCGGCCACAGGTAGGTGGGG
AGAGAGGGAGAGAGATGAGGGAGGGAAGGAAGGCAAAAAATGCGCGGAAG
GTAGGTCGGGAGGGAGGGAGGGAAGAGGGGGACGACAGGTTCAGGGGTGG
GCGGAAGCAAGAGAGAGCTTCCATTTCTATTTGGAAACAAGAAAAATTGG
AAATAAGAGGATTTGATCCAATTAACAACAGAATAAAAACTACGGGGACA
AGATCCGATCATCAATAGAATAAACGTGAAGGGGATTCGATCCTCCTCGA
GTAAATACACCACGACTAGAGCGAAGAGGCGCGCTTGCCCTTGCTTTCTC
TTTTTGTCCTGGTGTGATCAAGTATAGAATATCTGAAACGTTGTAATTTT
CTCTAAGTATGTATTTGTAATTTTCTAAGTGTATAAAATCTGAAACGTTG
TAATTTTCTCGTGTGTGCTTCTTTTTTTCCGGGTATGATCACGTATATAA
AATCTGAAATGCTATTATTTTCTCGTGTGTAGCTTCCCCTTGTTTTTTTG
CCGATGCCATGAATCGAAACGCTTTGAACAAATAGACACGGACAGATAGA
TATATAGACAACATGGCTGAATTGAATCCTTCACCAGTCTTTCCGCCCTC
CCTTCCCCCCTCCCTCCCTCCTTTTATCCCTTATTTTGCGTATGACTTTC
TCGTGCTCATTTGAACCTCCCCTCACTCCCCCACTATCATTTTTCACGTA
TTTTGCTAAGTGTTTGGCTCCCAGTCCTCATGGTCGGAGGCTTCGACCAT
CTCAAGAGGGTCCCTACCACCCCGTCGCTGTTGCTTAGGGGACAATAGTG
ACGCTACGGCGCAACTGAACTGCCCGGCCACGGCGCACTGGTGAATGCAT
ACGGGCTGCGGGAAAAGCCTTGGAATTTTCCAGCCGTATGTTTTTAAATT
GGAAGCAGCCCGACTTCAAGAAAAACCATGGCACCCGCATGGGACAAATC
AACAGAAAGGTCTAGGCCTGTCCACGGGTGAATGTCGTTCAACTTCTTGT
AATCAGGCTGCTTTAATTTGAACGACCTCTCACCTGCAACGAGGTTTTGA
CTTTTATGTTGATTTGTCCTATGTAGACAGGCACTCTGGCGTTTTTTGAA
ATCCGGCTGCTTCAACTTTGAAAAGTCAGTTAAGTTCAGGCTTTTTCAGC
AGCCCATACGAATTCATTCACCAGCCCCCGGTAACCGGAGCAGTTCAAAT
TCCTCCTCATCCCTCCCATTCGGCTATCTGCCAACCCCCTCCCTCCGTAG
GTCATTCTCTTTCTCTCTCCCAACATCTCTCCACAACGCCGCCTCCCTCT
TCCTTTCGCCCTTCCTTCCCCTCT back to topCoding sequence (CDS) from alignment at scaffold_30:214919..218542+ >mRNA_9017 ID=mRNA_9017|Name=jgi.p|Nanoce1779_2|633270|organism=Nannochloropsis oceanica|type=CDS|length=3645bp|location=Sequence derived from alignment at scaffold_30:214919..218542+ (Nannochloropsis oceanica) ATGATCACAGCAGCCAGTGCTAGCCACATGATGAACGAGGAGGCACTGGA TCATCACGAGCAGCAGTACCACGAACAGGAGGAGGCAGAGGAGGAGGGGA TTCGCGTGGAGGTAGAGGGACGCTTGGGGGTAAATGAGATACTCCCTCCT TTTTCCGCCGAGGAGGACGACGACGACGGGGAGGCAGCGGCAGCAGACTT GCTAGAGGAGAGAGGGGAGGAGGAAGGAGGGCATGACGGAGATGAAGAGG ATGCGCACCAACCTCATAACGCGACGGCTGCAGATGATACCATCTTCGAA GCTGCGGGAGAGGGCGGAGAGGAGGGGGAAGAGGAAGGGGGAGAAGGAGT AGTGATGCAGGACGAAGGGGTGGAGGGATGCGTGGAGGGTTTGAACGAGC GTCATTATTGGATGGAGGGTAGGGAGATAGTACGACTGTTCTGGGATAGG GCAGGGATGGAGGAGGAGGAGGATGGGAGGGAGGGAGGGAAGGAGGGGTT TGGAAGGGCGGTAAAGGAGGGAGTGAGGGAGGGCGTGTTGTTCTTGTTGG ACCCGGGGTGTGTGGATGCGGTGGTGCGATGTTGCCTTGGGAAAGGGGGG AGCGAGGGAGGAAGGGTGGGAGGGGAGGAGGGATGGCATATGCTGGTGGA CATTGTGGAGGCAGCTAAAAAGAGGGAAGATAGACGGGCACTGGTGCTTG CAGTGGCGAGGGAGGTGAAGAAGGGGGGAGGGGGTGAGGATGAAGGGGAG GAGGAGGAGGAGGAGGATTTGGAGCAATTTCTGGCGCAGCTGCCGGGGGG GAAAGAGGAGTGGGAGAGGGAGGTCGATATGATGAGGGGGGTGGTTGAGA TCGAGGATGAGGAGGAGGGAATGGAGGAGGGAGGGGAGGAGGGAGGGGAG GAGGGAGAAGAGAGGGTGGGAGGAGGAGGAGGAGGTGGAGGGATAGTAAG GAAGAGGGGTGAGGAGGAGGAGGAGGAGGTGCACGTGATGGAGGGGGAAG AAGGGGAGGAGGGGGAGGGAGAGAGGGAGGAAGAGGGAAAAGGGGATGAG GAGGGCGAGGAAGAGGAGAGAGAGCCGGCTCTGAAGAGGCATCGGTCCTC ATGGTCGGAGGCTTCGACCATCTCAAGAGGGTCCCTACCACCCCGTCGCT GTTGCTTAGGGGACAATAGTGACGCTACGGCGCAACTGAACTGCCCGGCC ACGGCGCACTGGTGAATGATCACAGCAGCCAGTGCTAGCCACATGATGAA CGAGGAGGCACTGGATCATCACGAGCAGCAGTACCACGAACAGGAGGAGG CAGAGGAGGAGGGGATTCGCGTGGAGGTAGAGGGACGCTTGGGGGTAAAT GAGATACTCCCTCCTTTTTCCGCCGAGGAGGACGACGACGACGGGGAGGC AGCGGCAGCAGACTTGCTAGAGGAGAGAGGGGAGGAGGAAGGAGGGCATG ACGGAGATGAAGAGGATGCGCACCAACCTCATAACGCGACGGCTGCAGAT GATACCATCTTCGAAGCTGCGGGAGAGGGCGGAGAGGAGGGGGAAGAGGA AGGGGGAGAAGGAGTAGTGATGCAGGACGAAGGGGTGGAGGGATGCGTGG AGGGTTTGAACGAGCGTCATTATTGGATGGAGGGTAGGGAGATAGTACGA CTGTTCTGGGATAGGGCAGGGATGGAGGAGGAGGAGGATGGGAGGGAGGG AGGGAAGGAGGGGTTTGGAAGGGCGGTAAAGGAGGGAGTGAGGGAGGGCG TGTTGTTCTTGTTGGACCCGGGGTGTGTGGATGCGGTGGTGCGATGTTGC CTTGGGAAAGGGGGGAGCGAGGGAGGAAGGGTGGGAGGGGAGGAGGGATG GCATATGCTGGTGGACATTGTGGAGGCAGCTAAAAAGAGGGAAGATAGAC GGGCACTGGTGCTTGCAGTGGCGAGGGAGGTGAAGAAGGGGGGAGGGGGT GAGGATGAAGGGGAGGAGGAGGAGGAGGAGGATTTGGAGCAATTTCTGGC GCAGCTGCCGGGGGGGAAAGAGGAGTGGGAGAGGGAGGTCGATATGATGA GGGGGGTGGTTGAGATCGAGGATGAGGAGGAGGGAATGGAGGAGGGAGGG GAGGAGGGAGGGGAGGAGGGAGAAGAGAGGGTGGGAGGAGGAGGAGGAGG TGGAGGGATAGTAAGGAAGAGGGGTGAGGAGGAGGAGGAGGAGGTGCACG TGATGGAGGGGGAAGAAGGGGAGGAGGGGGAGGGAGAGAGGGAGGAAGAG GGAAAAGGGGATGAGGAGGGCGAGGAAGAGGAGAGAGAGCCGGCTCTGAA GAGGCATCGGTCCTCATGGTCGGAGGCTTCGACCATCTCAAGAGGGTCCC TACCACCCCGTCGCTGTTGCTTAGGGGACAATAGTGACGCTACGGCGCAA CTGAACTGCCCGGCCACGGCGCACTGGTGAATGATCACAGCAGCCAGTGC TAGCCACATGATGAACGAGGAGGCACTGGATCATCACGAGCAGCAGTACC ACGAACAGGAGGAGGCAGAGGAGGAGGGGATTCGCGTGGAGGTAGAGGGA CGCTTGGGGGTAAATGAGATACTCCCTCCTTTTTCCGCCGAGGAGGACGA CGACGACGGGGAGGCAGCGGCAGCAGACTTGCTAGAGGAGAGAGGGGAGG AGGAAGGAGGGCATGACGGAGATGAAGAGGATGCGCACCAACCTCATAAC GCGACGGCTGCAGATGATACCATCTTCGAAGCTGCGGGAGAGGGCGGAGA GGAGGGGGAAGAGGAAGGGGGAGAAGGAGTAGTGATGCAGGACGAAGGGG TGGAGGGATGCGTGGAGGGTTTGAACGAGCGTCATTATTGGATGGAGGGT AGGGAGATAGTACGACTGTTCTGGGATAGGGCAGGGATGGAGGAGGAGGA GGATGGGAGGGAGGGAGGGAAGGAGGGGTTTGGAAGGGCGGTAAAGGAGG GAGTGAGGGAGGGCGTGTTGTTCTTGTTGGACCCGGGGTGTGTGGATGCG GTGGTGCGATGTTGCCTTGGGAAAGGGGGGAGCGAGGGAGGAAGGGTGGG AGGGGAGGAGGGATGGCATATGCTGGTGGACATTGTGGAGGCAGCTAAAA AGAGGGAAGATAGACGGGCACTGGTGCTTGCAGTGGCGAGGGAGGTGAAG AAGGGGGGAGGGGGTGAGGATGAAGGGGAGGAGGAGGAGGAGGAGGATTT GGAGCAATTTCTGGCGCAGCTGCCGGGGGGGAAAGAGGAGTGGGAGAGGG AGGTCGATATGATGAGGGGGGTGGTTGAGATCGAGGATGAGGAGGAGGGA ATGGAGGAGGGAGGGGAGGAGGGAGGGGAGGAGGGAGAAGAGAGGGTGGG AGGAGGAGGAGGAGGTGGAGGGATAGTAAGGAAGAGGGGTGAGGAGGAGG AGGAGGAGGTGCACGTGATGGAGGGGGAAGAAGGGGAGGAGGGGGAGGGA GAGAGGGAGGAAGAGGGAAAAGGGGATGAGGAGGGCGAGGAAGAGGAGAG AGAGCCGGCTCTGAAGAGGCATCGGTCCTCATGGTCGGAGGCTTCGACCA TCTCAAGAGGGTCCCTACCACCCCGTCGCTGTTGCTTAGGGGACAATAGT GACGCTACGGCGCAACTGAACTGCCCGGCCACGGCGCACTGGTGA back to top
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