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Properties
| Property Name | Value |
|---|
| TranscriptId | 633356 |
| Track | FilteredModels2 |
| ProteinId | 633270 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_30 | supercontig | scaffold_30:214919..218542 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9017 ID=mRNA_9017|Name=jgi.p|Nanoce1779_2|633270|organism=Nannochloropsis oceanica|type=mRNA|length=1807bp
ACAGACGGAGACAAATAAAATTGATTGCCAGTGCTACTTATTCTCCTCCT
CCCGTTCTGCGGCGTGCAGCAAGCAGCAGGGAAGACAGCTAGCGCTCAAG
CACCCTTGCTTCATGATCACAGCAGCCAGTGCTAGCCACATGATGAACGA
GGAGGCACTGGATCATCACGAGCAGCAGTACCACGAACAGGAGGAGGCAG
AGGAGGAGGGGATTCGCGTGGAGGTAGAGGGACGCTTGGGGGTAAATGAG
ATACTCCCTCCTTTTTCCGCCGAGGAGGACGACGACGACGGGGAGGCAGC
GGCAGCAGACTTGCTAGAGGAGAGAGGGGAGGAGGAAGGAGGGCATGACG
GAGATGAAGAGGATGCGCACCAACCTCATAACGCGACGGCTGCAGATGAT
ACCATCTTCGAAGCTGCGGGAGAGGGCGGAGAGGAGGGGGAAGAGGAAGG
GGGAGAAGGAGTAGTGATGCAGGACGAAGGGGTGGAGGGATGCGTGGAGG
GTTTGAACGAGCGTCATTATTGGATGGAGGGTAGGGAGATAGTACGACTG
TTCTGGGATAGGGCAGGGATGGAGGAGGAGGAGGATGGGAGGGAGGGAGG
GAAGGAGGGGTTTGGAAGGGCGGTAAAGGAGGGAGTGAGGGAGGGCGTGT
TGTTCTTGTTGGACCCGGGGTGTGTGGATGCGGTGGTGCGATGTTGCCTT
GGGAAAGGGGGGAGCGAGGGAGGAAGGGTGGGAGGGGAGGAGGGATGGCA
TATGCTGGTGGACATTGTGGAGGCAGCTAAAAAGAGGGAAGATAGACGGG
CACTGGTGCTTGCAGTGGCGAGGGAGGTGAAGAAGGGGGGAGGGGGTGAG
GATGAAGGGGAGGAGGAGGAGGAGGAGGATTTGGAGCAATTTCTGGCGCA
GCTGCCGGGGGGGAAAGAGGAGTGGGAGAGGGAGGTCGATATGATGAGGG
GGGTGGTTGAGATCGAGGATGAGGAGGAGGGAATGGAGGAGGGAGGGGAG
GAGGGAGGGGAGGAGGGAGAAGAGAGGGTGGGAGGAGGAGGAGGAGGTGG
AGGGATAGTAAGGAAGAGGGGTGAGGAGGAGGAGGAGGAGGTGCACGTGA
TGGAGGGGGAAGAAGGGGAGGAGGGGGAGGGAGAGAGGGAGGAAGAGGGA
AAAGGGGATGAGGAGGGCGAGGAAGAGGAGAGAGAGCCGGCTCTGAAGAG
GCATCGGTCCTCATGGTCGGAGGCTTCGACCATCTCAAGAGGGTCCCTAC
CACCCCGTCGCTGTTGCTTAGGGGACAATAGTGACGCTACGGCGCAACTG
AACTGCCCGGCCACGGCGCACTGGTGAATGCATACGGGCTGCGGGAAAAG
CCTTGGAATTTTCCAGCCGTATGTTTTTAAATTGGAAGCAGCCCGACTTC
AAGAAAAACCATGGCACCCGCATGGGACAAATCAACAGAAAGGTCTAGGC
CTGTCCACGGGTGAATGTCGTTCAACTTCTTGTAATCAGGCTGCTTTAAT
TTGAACGACCTCTCACCTGCAACGAGGTTTTGACTTTTATGTTGATTTGT
CCTATGTAGACAGGCACTCTGGCGTTTTTTGAAATCCGGCTGCTTCAACT
TTGAAAAGTCAGTTAAGTTCAGGCTTTTTCAGCAGCCCATACGAATTCAT
TCACCAGCCCCCGGTAACCGGAGCAGTTCAAATTCCTCCTCATCCCTCCC
ATTCGGCTATCTGCCAACCCCCTCCCTCCGTAGGTCATTCTCTTTCTCTC
TCCCAACATCTCTCCACAACGCCGCCTCCCTCTTCCTTTCGCCCTTCCTT
CCCCTCT back to topprotein sequence of jgi.p|Nanoce1779_2|633270 >mRNA_9017-protein ID=mRNA_9017-protein|Name=jgi.p|Nanoce1779_2|633270|organism=Nannochloropsis oceanica|type=polypeptide|length=405bp
MITAASASHMMNEEALDHHEQQYHEQEEAEEEGIRVEVEGRLGVNEILPP
FSAEEDDDDGEAAAADLLEERGEEEGGHDGDEEDAHQPHNATAADDTIFE
AAGEGGEEGEEEGGEGVVMQDEGVEGCVEGLNERHYWMEGREIVRLFWDR
AGMEEEEDGREGGKEGFGRAVKEGVREGVLFLLDPGCVDAVVRCCLGKGG
SEGGRVGGEEGWHMLVDIVEAAKKREDRRALVLAVAREVKKGGGGEDEGE
EEEEEDLEQFLAQLPGGKEEWEREVDMMRGVVEIEDEEEGMEEGGEEGGE
EGEERVGGGGGGGGIVRKRGEEEEEEVHVMEGEEGEEGEGEREEEGKGDE
EGEEEEREPALKRHRSSWSEASTISRGSLPPRRCCLGDNSDATAQLNCPA
TAHW* back to topmRNA from alignment at scaffold_30:214919..218542+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9017 ID=mRNA_9017|Name=jgi.p|Nanoce1779_2|633270|organism=Nannochloropsis oceanica|type=mRNA|length=3624bp|location=Sequence derived from alignment at scaffold_30:214919..218542+ (Nannochloropsis oceanica)
ACAGACGGAGACAAATAAAATTGATTGCCAGTGCTACTTATTCTCCTCCT
CCCGTTCTGCGGCGTGCAGCAAGCAGCAGGGAAGACAGCTAGCGCTCAAG
CACCCTTGCTTCATGATCACAGCAGCCAGTGCTAGCCACATGATGAACGA
GGAGGCACTGGATCATCACGAGCAGCAGTACCACGAACAGGAGGAGGCAG
AGGAGGAGGGGATTCGCGTGGAGGTAGAGGGACGCTTGGGGGTAAATGAG
ATACTCCCTCCTTTTTCCGCCGAGGAGGACGACGACGACGGGGAGGCAGC
GGCAGCAGACTTGCTAGAGGAGAGAGGGGAGGAGGAAGGAGGGCATGACG
GAGATGAAGAGGATGCGCACCAACCTCATAACGCGACGGCTGCAGATGAT
ACCATCTTCGAAGCTGCGGGAGAGGGCGGAGAGGAGGGGGAAGAGGAAGG
GGGAGAAGGAGTAGTGATGCAGGACGAAGGGGTGGAGGGATGCGTGGAGG
TATGTCTGGAGGGAGGAGGGGAGGAGGAAGGCGCCGAAGGAGAAGGAGGT
GAGGGGGCGATAGTCATAGAGGAAGATACGGAGGAAGAAGCGGTGGCCAC
GCTGCTGGCAGCGACAGGGGAGGAGGAAGAGGGGGGAGGAGATGAAGAGA
AGGAGGAGGAGGAGGAGGAGCAGGAGGAGGAGGAGGAGGTAGAGTATGTA
GCGCACGTGCCAGGGACAGGGGAAGGAGGCCTCTACGACGATGAGGAGGA
AGGGGTGGAAGTAGAGGGAGCAGATTTCACAGCAGCAGCAGCAGCAGCAT
CAGCAGCAACAACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGTGCAGCA
CTGGCTAGAGGAGGTGGAGGACGAGGTCTTGACCGAAGGGAAGGAGGAGA
AGAAGATCTAAGAGACGGCAACGGAAGCTCGATTTCTTCCACCTCGGGCT
CCGCCTCCTCCTCCCCCTCCCCCTCTGCCTCGGCCACCGCTCCTCCCTCC
CTCCCTGCCCCTCCCTCCCCAAACGCATTCCTCCTCCAATGCCTAGAAAA
CGCAACAATTGCCACATGGGCCCCTTCCGAGCTCGGGCGACTCGTGGCCG
TCCTTGCGCAGACAATGCACTGGCACCTCAATCCCCCCCTCCTCCATGCC
TTCCTCTCCTCCCTCCCTCCCTCCCTCCTTCCCCTCCGCACCCTTCCCGC
GTTGCTCAAGGGTTTGAACGAGCGTCATTATTGGATGGAGGGTAGGGAGA
TAGTACGACTGTTCTGGGATAGGGCAGGGATGGAGGAGGAGGAGGATGGG
AGGGAGGGAGGGAAGGAGGGGTTTGGAAGGGCGGTAAAGGAGGGAGTGAG
GGAGGGCGTGTTGTTCTTGTTGGACCCGGGGTGTGTGGATGCGGTGGTGC
GATGTTGCCTTGGGAAAGGGGGGAGCGAGGGAGGAAGGGTGGGAGGGGAG
GAGGGATGGCATATGCTGGTGGACATTGTGGAGGCAGCTAAAAAGAGGGA
AGATAGACGGGCACTGGTGCTTGCAGTGGCGAGGGAGGTGAAGAAGGGGG
GAGGGGGTGAGGATGAAGGGGAGGAGGAGGAGGAGGAGGATTTGGAGCAA
TTTCTGGCGCAGCTGCCGGGGGGGAAAGAGGAGTGGGAGAGGGAGGTCGA
TATGATGAGGGGGGTGGTTGAGATCGAGGATGAGGAGGAGGGAATGGAGG
AGGGAGGGGAGGAGGGAGGGGAGGAGGGAGAAGAGAGGGTGGGAGGAGGA
GGAGGAGGTGGAGGGATAGTAAGGAAGAGGGGTGAGGAGGAGGAGGAGGA
GGTGCACGTGATGGAGGGGGAAGAAGGGGAGGAGGGGGAGGGAGAGAGGG
AGGAAGAGGGAAAAGGGGATGAGGAGGGCGAGGAAGAGGAGAGAGAGCCG
GCTCTGAAGAGGCATCGGGTGGGGGAGGAAGAGGAAGGGGAAGGAGGGAT
GGAGGGAGGGATTGAGGGAGAAGAGAAAGTAGCAGTAGCAGCAATGCTAG
ATGCAACCGAGGGATGAATGCATGTGGCAATAGACAGGTGGCAGCAGCGA
AGACGGGAACAGCTGTGGGACCAACAACAATAACAACAATCACAGAGCAG
CAGCTGCAGCATCATCAGTATGAATTGCAGCAGCAGCAGCAGCAGCAGAA
TCTATAGCAGCAGCAGCATTGTAAGCGGGACGGAATCGGTCAAGGGAGAA
GAGGTGAGAGAAGAGAACAGTGTGCAGATGTTCGGGCAACGAGAGATAAG
TGGCGGGAACGGTATACATACATATCTGAGGCGGCCACAGGTAGGTGGGG
AGAGAGGGAGAGAGATGAGGGAGGGAAGGAAGGCAAAAAATGCGCGGAAG
GTAGGTCGGGAGGGAGGGAGGGAAGAGGGGGACGACAGGTTCAGGGGTGG
GCGGAAGCAAGAGAGAGCTTCCATTTCTATTTGGAAACAAGAAAAATTGG
AAATAAGAGGATTTGATCCAATTAACAACAGAATAAAAACTACGGGGACA
AGATCCGATCATCAATAGAATAAACGTGAAGGGGATTCGATCCTCCTCGA
GTAAATACACCACGACTAGAGCGAAGAGGCGCGCTTGCCCTTGCTTTCTC
TTTTTGTCCTGGTGTGATCAAGTATAGAATATCTGAAACGTTGTAATTTT
CTCTAAGTATGTATTTGTAATTTTCTAAGTGTATAAAATCTGAAACGTTG
TAATTTTCTCGTGTGTGCTTCTTTTTTTCCGGGTATGATCACGTATATAA
AATCTGAAATGCTATTATTTTCTCGTGTGTAGCTTCCCCTTGTTTTTTTG
CCGATGCCATGAATCGAAACGCTTTGAACAAATAGACACGGACAGATAGA
TATATAGACAACATGGCTGAATTGAATCCTTCACCAGTCTTTCCGCCCTC
CCTTCCCCCCTCCCTCCCTCCTTTTATCCCTTATTTTGCGTATGACTTTC
TCGTGCTCATTTGAACCTCCCCTCACTCCCCCACTATCATTTTTCACGTA
TTTTGCTAAGTGTTTGGCTCCCAGTCCTCATGGTCGGAGGCTTCGACCAT
CTCAAGAGGGTCCCTACCACCCCGTCGCTGTTGCTTAGGGGACAATAGTG
ACGCTACGGCGCAACTGAACTGCCCGGCCACGGCGCACTGGTGAATGCAT
ACGGGCTGCGGGAAAAGCCTTGGAATTTTCCAGCCGTATGTTTTTAAATT
GGAAGCAGCCCGACTTCAAGAAAAACCATGGCACCCGCATGGGACAAATC
AACAGAAAGGTCTAGGCCTGTCCACGGGTGAATGTCGTTCAACTTCTTGT
AATCAGGCTGCTTTAATTTGAACGACCTCTCACCTGCAACGAGGTTTTGA
CTTTTATGTTGATTTGTCCTATGTAGACAGGCACTCTGGCGTTTTTTGAA
ATCCGGCTGCTTCAACTTTGAAAAGTCAGTTAAGTTCAGGCTTTTTCAGC
AGCCCATACGAATTCATTCACCAGCCCCCGGTAACCGGAGCAGTTCAAAT
TCCTCCTCATCCCTCCCATTCGGCTATCTGCCAACCCCCTCCCTCCGTAG
GTCATTCTCTTTCTCTCTCCCAACATCTCTCCACAACGCCGCCTCCCTCT
TCCTTTCGCCCTTCCTTCCCCTCT back to topCoding sequence (CDS) from alignment at scaffold_30:214919..218542+ >mRNA_9017 ID=mRNA_9017|Name=jgi.p|Nanoce1779_2|633270|organism=Nannochloropsis oceanica|type=CDS|length=3645bp|location=Sequence derived from alignment at scaffold_30:214919..218542+ (Nannochloropsis oceanica)
ATGATCACAGCAGCCAGTGCTAGCCACATGATGAACGAGGAGGCACTGGA
TCATCACGAGCAGCAGTACCACGAACAGGAGGAGGCAGAGGAGGAGGGGA
TTCGCGTGGAGGTAGAGGGACGCTTGGGGGTAAATGAGATACTCCCTCCT
TTTTCCGCCGAGGAGGACGACGACGACGGGGAGGCAGCGGCAGCAGACTT
GCTAGAGGAGAGAGGGGAGGAGGAAGGAGGGCATGACGGAGATGAAGAGG
ATGCGCACCAACCTCATAACGCGACGGCTGCAGATGATACCATCTTCGAA
GCTGCGGGAGAGGGCGGAGAGGAGGGGGAAGAGGAAGGGGGAGAAGGAGT
AGTGATGCAGGACGAAGGGGTGGAGGGATGCGTGGAGGGTTTGAACGAGC
GTCATTATTGGATGGAGGGTAGGGAGATAGTACGACTGTTCTGGGATAGG
GCAGGGATGGAGGAGGAGGAGGATGGGAGGGAGGGAGGGAAGGAGGGGTT
TGGAAGGGCGGTAAAGGAGGGAGTGAGGGAGGGCGTGTTGTTCTTGTTGG
ACCCGGGGTGTGTGGATGCGGTGGTGCGATGTTGCCTTGGGAAAGGGGGG
AGCGAGGGAGGAAGGGTGGGAGGGGAGGAGGGATGGCATATGCTGGTGGA
CATTGTGGAGGCAGCTAAAAAGAGGGAAGATAGACGGGCACTGGTGCTTG
CAGTGGCGAGGGAGGTGAAGAAGGGGGGAGGGGGTGAGGATGAAGGGGAG
GAGGAGGAGGAGGAGGATTTGGAGCAATTTCTGGCGCAGCTGCCGGGGGG
GAAAGAGGAGTGGGAGAGGGAGGTCGATATGATGAGGGGGGTGGTTGAGA
TCGAGGATGAGGAGGAGGGAATGGAGGAGGGAGGGGAGGAGGGAGGGGAG
GAGGGAGAAGAGAGGGTGGGAGGAGGAGGAGGAGGTGGAGGGATAGTAAG
GAAGAGGGGTGAGGAGGAGGAGGAGGAGGTGCACGTGATGGAGGGGGAAG
AAGGGGAGGAGGGGGAGGGAGAGAGGGAGGAAGAGGGAAAAGGGGATGAG
GAGGGCGAGGAAGAGGAGAGAGAGCCGGCTCTGAAGAGGCATCGGTCCTC
ATGGTCGGAGGCTTCGACCATCTCAAGAGGGTCCCTACCACCCCGTCGCT
GTTGCTTAGGGGACAATAGTGACGCTACGGCGCAACTGAACTGCCCGGCC
ACGGCGCACTGGTGAATGATCACAGCAGCCAGTGCTAGCCACATGATGAA
CGAGGAGGCACTGGATCATCACGAGCAGCAGTACCACGAACAGGAGGAGG
CAGAGGAGGAGGGGATTCGCGTGGAGGTAGAGGGACGCTTGGGGGTAAAT
GAGATACTCCCTCCTTTTTCCGCCGAGGAGGACGACGACGACGGGGAGGC
AGCGGCAGCAGACTTGCTAGAGGAGAGAGGGGAGGAGGAAGGAGGGCATG
ACGGAGATGAAGAGGATGCGCACCAACCTCATAACGCGACGGCTGCAGAT
GATACCATCTTCGAAGCTGCGGGAGAGGGCGGAGAGGAGGGGGAAGAGGA
AGGGGGAGAAGGAGTAGTGATGCAGGACGAAGGGGTGGAGGGATGCGTGG
AGGGTTTGAACGAGCGTCATTATTGGATGGAGGGTAGGGAGATAGTACGA
CTGTTCTGGGATAGGGCAGGGATGGAGGAGGAGGAGGATGGGAGGGAGGG
AGGGAAGGAGGGGTTTGGAAGGGCGGTAAAGGAGGGAGTGAGGGAGGGCG
TGTTGTTCTTGTTGGACCCGGGGTGTGTGGATGCGGTGGTGCGATGTTGC
CTTGGGAAAGGGGGGAGCGAGGGAGGAAGGGTGGGAGGGGAGGAGGGATG
GCATATGCTGGTGGACATTGTGGAGGCAGCTAAAAAGAGGGAAGATAGAC
GGGCACTGGTGCTTGCAGTGGCGAGGGAGGTGAAGAAGGGGGGAGGGGGT
GAGGATGAAGGGGAGGAGGAGGAGGAGGAGGATTTGGAGCAATTTCTGGC
GCAGCTGCCGGGGGGGAAAGAGGAGTGGGAGAGGGAGGTCGATATGATGA
GGGGGGTGGTTGAGATCGAGGATGAGGAGGAGGGAATGGAGGAGGGAGGG
GAGGAGGGAGGGGAGGAGGGAGAAGAGAGGGTGGGAGGAGGAGGAGGAGG
TGGAGGGATAGTAAGGAAGAGGGGTGAGGAGGAGGAGGAGGAGGTGCACG
TGATGGAGGGGGAAGAAGGGGAGGAGGGGGAGGGAGAGAGGGAGGAAGAG
GGAAAAGGGGATGAGGAGGGCGAGGAAGAGGAGAGAGAGCCGGCTCTGAA
GAGGCATCGGTCCTCATGGTCGGAGGCTTCGACCATCTCAAGAGGGTCCC
TACCACCCCGTCGCTGTTGCTTAGGGGACAATAGTGACGCTACGGCGCAA
CTGAACTGCCCGGCCACGGCGCACTGGTGAATGATCACAGCAGCCAGTGC
TAGCCACATGATGAACGAGGAGGCACTGGATCATCACGAGCAGCAGTACC
ACGAACAGGAGGAGGCAGAGGAGGAGGGGATTCGCGTGGAGGTAGAGGGA
CGCTTGGGGGTAAATGAGATACTCCCTCCTTTTTCCGCCGAGGAGGACGA
CGACGACGGGGAGGCAGCGGCAGCAGACTTGCTAGAGGAGAGAGGGGAGG
AGGAAGGAGGGCATGACGGAGATGAAGAGGATGCGCACCAACCTCATAAC
GCGACGGCTGCAGATGATACCATCTTCGAAGCTGCGGGAGAGGGCGGAGA
GGAGGGGGAAGAGGAAGGGGGAGAAGGAGTAGTGATGCAGGACGAAGGGG
TGGAGGGATGCGTGGAGGGTTTGAACGAGCGTCATTATTGGATGGAGGGT
AGGGAGATAGTACGACTGTTCTGGGATAGGGCAGGGATGGAGGAGGAGGA
GGATGGGAGGGAGGGAGGGAAGGAGGGGTTTGGAAGGGCGGTAAAGGAGG
GAGTGAGGGAGGGCGTGTTGTTCTTGTTGGACCCGGGGTGTGTGGATGCG
GTGGTGCGATGTTGCCTTGGGAAAGGGGGGAGCGAGGGAGGAAGGGTGGG
AGGGGAGGAGGGATGGCATATGCTGGTGGACATTGTGGAGGCAGCTAAAA
AGAGGGAAGATAGACGGGCACTGGTGCTTGCAGTGGCGAGGGAGGTGAAG
AAGGGGGGAGGGGGTGAGGATGAAGGGGAGGAGGAGGAGGAGGAGGATTT
GGAGCAATTTCTGGCGCAGCTGCCGGGGGGGAAAGAGGAGTGGGAGAGGG
AGGTCGATATGATGAGGGGGGTGGTTGAGATCGAGGATGAGGAGGAGGGA
ATGGAGGAGGGAGGGGAGGAGGGAGGGGAGGAGGGAGAAGAGAGGGTGGG
AGGAGGAGGAGGAGGTGGAGGGATAGTAAGGAAGAGGGGTGAGGAGGAGG
AGGAGGAGGTGCACGTGATGGAGGGGGAAGAAGGGGAGGAGGGGGAGGGA
GAGAGGGAGGAAGAGGGAAAAGGGGATGAGGAGGGCGAGGAAGAGGAGAG
AGAGCCGGCTCTGAAGAGGCATCGGTCCTCATGGTCGGAGGCTTCGACCA
TCTCAAGAGGGTCCCTACCACCCCGTCGCTGTTGCTTAGGGGACAATAGT
GACGCTACGGCGCAACTGAACTGCCCGGCCACGGCGCACTGGTGA back to top
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