jgi.p|Nanoce1779_2|604901, mRNA_9015 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604901
Unique Name	mRNA_9015
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1029
Alignment location	scaffold_30:211213..212241 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	604987
Track	FilteredModels2
ProteinId	604901

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_30	supercontig	scaffold_30:211213..212241 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604901	gene_9015	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604901	mRNA_9015-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9015	CDS_9015	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_30:211213..212241+
coding sequence from alignment at scaffold_30:211213..212241+

mRNA sequence

>mRNA_9015 ID=mRNA_9015|Name=jgi.p|Nanoce1779_2|604901|organism=Nannochloropsis oceanica|type=mRNA|length=1029bp
ATTCTTCCTCATTCTTCCACTTCTTTCTCTTTTGTACATTTTGGCTCTAG
GAGCCTGTCAATGGTCTTAATTCCCCCGCTCTACGTGTATTTTGGTGCGT
GCTGGTCTTACTTTTCAAAAAGTCAAATCTGTCTTTACGCACTGTCGCTC
TTCTTTCCCTTCTCCCTCCACGTGACACGAGGCGGCGAATGTGCTTCGCA
ACTTTTTCGAGGCTCGACTACTTCTTTCTCGTTTCTTCGTCTGCCAACTC
TCTATTCTCTTTTCCATGCCTCTATGCCTCCCGTTTCGCCTCCCCTCAAT
ACGAGCCATCAAGACAAAAAAAGAGTCTCCTACGAAGAGGGGTATTATAG
AAAGGAATTCGGCGCTGGTTCTTGTCCCAAAACAGAGATTTCGATGGTGA
TGAATTGGATGCTGACATTTCTCGACGGGGAATTCAAGTACATTCGAAAA
AAAAAGACATGCGATTGCGTCGGTCCCACCAGAGTCGCCTCCGCGGAACC
TTTTATGGTGCATGATTTGCTCTTGTTTCGCAGGATTTGCTCTTGTATCA
CAATGTTTCCCCCTTCCGCCAGATATGATGCTGTATCAGAAGGCTAAACC
GTTGAGAGAGAAGAGAGGCACGATGAAGGTACACGACACGACAGGCAGAG
ACTTTCTCGTGCCCTCCCCGCGGACGACAACCCGTTTATGTAGTTGAAAA
AAAAAACTCGTATGTATATATACACACATGACAGGCAGCCTGTCGTGTAA
CAGAGAGAGAAGGACAAGACTTCCTTTACTTCTTCCTCAGTCCCTTCCCA
TTTGCTCCCGTTTCCCATGTCCAAAGGTTTTGCCCAGCAAAAATTCCTTG
TCGAATTCGTTGTCTAGAAATTTGCTCTTGTCCACCTTGCGAGCTTTCGC
AATGATCTCTGCCCGCAGATCCCGCGCATGACCCTGCGCACTTACCGCTG
CCCCAATCCTCTCCTCCCCCCCTACCCCCCACACCTCCAATCCCTCCATA
TCAAACTCGCCCTCCCTCCCTCCATCCAT

protein sequence of jgi.p|Nanoce1779_2|604901

>mRNA_9015-protein ID=mRNA_9015-protein|Name=jgi.p|Nanoce1779_2|604901|organism=Nannochloropsis oceanica|type=polypeptide|length=179bp
MVLIPPLYVYFGACWSYFSKSQICLYALSLFFPFSLHVTRGGECASQLFR
GSTTSFSFLRLPTLYSLFHASMPPVSPPLNTSHQDKKRVSYEEGYYRKEF
GAGSCPKTEISMVMNWMLTFLDGEFKYIRKKKTCDCVGPTRVASAEPFMV
HDLLLFRRICSCITMFPPSARYDAVSEG*

mRNA from alignment at scaffold_30:211213..212241+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9015 ID=mRNA_9015|Name=jgi.p|Nanoce1779_2|604901|organism=Nannochloropsis oceanica|type=mRNA|length=1029bp|location=Sequence derived from alignment at scaffold_30:211213..212241+ (Nannochloropsis oceanica)
ATTCTTCCTCATTCTTCCACTTCTTTCTCTTTTGTACATTTTGGCTCTAG
GAGCCTGTCAATGGTCTTAATTCCCCCGCTCTACGTGTATTTTGGTGCGT
GCTGGTCTTACTTTTCAAAAAGTCAAATCTGTCTTTACGCACTGTCGCTC
TTCTTTCCCTTCTCCCTCCACGTGACACGAGGCGGCGAATGTGCTTCGCA
ACTTTTTCGAGGCTCGACTACTTCTTTCTCGTTTCTTCGTCTGCCAACTC
TCTATTCTCTTTTCCATGCCTCTATGCCTCCCGTTTCGCCTCCCCTCAAT
ACGAGCCATCAAGACAAAAAAAGAGTCTCCTACGAAGAGGGGTATTATAG
AAAGGAATTCGGCGCTGGTTCTTGTCCCAAAACAGAGATTTCGATGGTGA
TGAATTGGATGCTGACATTTCTCGACGGGGAATTCAAGTACATTCGAAAA
AAAAAGACATGCGATTGCGTCGGTCCCACCAGAGTCGCCTCCGCGGAACC
TTTTATGGTGCATGATTTGCTCTTGTTTCGCAGGATTTGCTCTTGTATCA
CAATGTTTCCCCCTTCCGCCAGATATGATGCTGTATCAGAAGGCTAAACC
GTTGAGAGAGAAGAGAGGCACGATGAAGGTACACGACACGACAGGCAGAG
ACTTTCTCGTGCCCTCCCCGCGGACGACAACCCGTTTATGTAGTTGAAAA
AAAAAACTCGTATGTATATATACACACATGACAGGCAGCCTGTCGTGTAA
CAGAGAGAGAAGGACAAGACTTCCTTTACTTCTTCCTCAGTCCCTTCCCA
TTTGCTCCCGTTTCCCATGTCCAAAGGTTTTGCCCAGCAAAAATTCCTTG
TCGAATTCGTTGTCTAGAAATTTGCTCTTGTCCACCTTGCGAGCTTTCGC
AATGATCTCTGCCCGCAGATCCCGCGCATGACCCTGCGCACTTACCGCTG
CCCCAATCCTCTCCTCCCCCCCTACCCCCCACACCTCCAATCCCTCCATA
TCAAACTCGCCCTCCCTCCCTCCATCCAT

Coding sequence (CDS) from alignment at scaffold_30:211213..212241+

>mRNA_9015 ID=mRNA_9015|Name=jgi.p|Nanoce1779_2|604901|organism=Nannochloropsis oceanica|type=CDS|length=537bp|location=Sequence derived from alignment at scaffold_30:211213..212241+ (Nannochloropsis oceanica)
ATGGTCTTAATTCCCCCGCTCTACGTGTATTTTGGTGCGTGCTGGTCTTA
CTTTTCAAAAAGTCAAATCTGTCTTTACGCACTGTCGCTCTTCTTTCCCT
TCTCCCTCCACGTGACACGAGGCGGCGAATGTGCTTCGCAACTTTTTCGA
GGCTCGACTACTTCTTTCTCGTTTCTTCGTCTGCCAACTCTCTATTCTCT
TTTCCATGCCTCTATGCCTCCCGTTTCGCCTCCCCTCAATACGAGCCATC
AAGACAAAAAAAGAGTCTCCTACGAAGAGGGGTATTATAGAAAGGAATTC
GGCGCTGGTTCTTGTCCCAAAACAGAGATTTCGATGGTGATGAATTGGAT
GCTGACATTTCTCGACGGGGAATTCAAGTACATTCGAAAAAAAAAGACAT
GCGATTGCGTCGGTCCCACCAGAGTCGCCTCCGCGGAACCTTTTATGGTG
CATGATTTGCTCTTGTTTCGCAGGATTTGCTCTTGTATCACAATGTTTCC
CCCTTCCGCCAGATATGATGCTGTATCAGAAGGCTAA

Synonyms

Publications