jgi.p|Nanoce1779_2|633268, mRNA_9014 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|633268
Unique Name	mRNA_9014
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1472
Alignment location	scaffold_30:209504..211212 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	633354
Track	FilteredModels2
ProteinId	633268

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_30	supercontig	scaffold_30:209504..211212 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633268	gene_9014	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|633268	mRNA_9014-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9014	CDS_9014	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_30:209504..211212+
coding sequence from alignment at scaffold_30:209504..211212+

mRNA sequence

>mRNA_9014 ID=mRNA_9014|Name=jgi.p|Nanoce1779_2|633268|organism=Nannochloropsis oceanica|type=mRNA|length=1472bp
ATGCAGGGGAAAATTATGCGGCAAATGAACAGGGCCGTGGGGCCGGCGGT
TGGGGGGAGCAGGGTGGAGGTGGAGGGAGGAAAGGAGGGAAGGGTTGTTG
TCCTCTCAGTGTCGCCCCGAAAACCTCGGCCTCTGTTTACCGGTGGTCGC
CTTCTCTTCTATGCTTTACTGGATCCTAATACTCTCGTTCAGAACAAAAA
GACAAAGGAGAAAGGAAACGAGGGGGAAGAAGGGTGGGTGGATGTCGGCG
ATGAGAAGGAGGGCTGGAGGGAGGAAGGGCTGACTATCCGGGTAAGGGGC
ACCGGGCCGGGAGGGGAGCAAGTGGTAATTCCAGTACCTCTTCAGATTGT
CCCTCGGGGTTTTGCGCCGTCGGGAATGCTGAGGGCCCTGGCCGTGAAAT
CAGTCCTGAGCGACTTGGAGGAGGAGGTGGAGGGAGAGGGGGAAGGGAAG
GAGAGGGCAAAGACAGAGGCGGTGGCTCTGTCGGTCGCAAGTGGGGTTTT
ATGCAAGTACACTTCGTTTGTGGCTGTGGAAGAAGGGGGGGAGGGCGGGA
GGTTCGGAGGGTCTAAGCGAGTCTATCTTCCTCTGGCGTTCGTGACTCGG
ACAAATATGGGTCATGACCCATGGGGGCAAGGGAGAGGACGAGGAGGAGG
TCGAGGAGTAGGAAGAATGTTGAATTTTGCTGCTGCATCTTCGCCTATGA
TGGCCATGGCGCAATGTCGTGGGTCGGCTCCAGTGATGATAAAGGAAGCT
GCGCATGGAGGGGTTAGGAGCGGTCGTTCTGATGTGGGGCATCGTGAGGA
GGGGAAGGGTGAGGAAAAAAGAGAGCACGGGGAGGGAAAAAATGTCTTGA
AGGAGCTCGAGGCACGGATGCGTGTGATAAAGCGAAGGGACGGAAGGGCG
GAGGAAGGGGAGGAGGAGGAGCAGGAAGAGAAAAAGATGAAGAAGGAGAA
GGATGTATGGGCCACAGCATTGGTCTTGCTATACTTGGAGAAGAAATGGG
GGAAGTATGAAGAAGAGTGGGAGGTGGCGGAGAAGAAGGCAAAACGATGG
TTGTTGCGCAGGATGGGAGGGAGCGAGGAAGGGGTACAGGACGTGATGGA
GAAGGCTGGGAAGGTCTTGGCGGCGAAAGAATTTGTTTAACTAATAGGGT
TTCGTTAAAAGAATGAGGAGGGAGGCACTGAGGACAAGGAAAGAGTCAAG
GGGAAGAGGGAAGCACCAGGGGCCCCGTACGTGTCAAAAAAGGCAAGGAA
AGGTCCAAAGAGGGGAGGGAAGCAGTAGTTGATTGATGCTACACATTGAA
TGGAAGCAAGATGTAGATAGAATGCATGCATATGAATGAGATATGAGTGC
TTGTGTCTGTCCGGGGGGCTGAGATCGCTCTCCCTTTCGAATCACGGTGT
ATGACAACAGGGACGAAAGGACGAAATCAGTGTGTATAAAAAGTGGGAAA
CAACAATAAGAGGCGAAGCAGC

protein sequence of jgi.p|Nanoce1779_2|633268

>mRNA_9014-protein ID=mRNA_9014-protein|Name=jgi.p|Nanoce1779_2|633268|organism=Nannochloropsis oceanica|type=polypeptide|length=380bp
MQGKIMRQMNRAVGPAVGGSRVEVEGGKEGRVVVLSVSPRKPRPLFTGGR
LLFYALLDPNTLVQNKKTKEKGNEGEEGWVDVGDEKEGWREEGLTIRVRG
TGPGGEQVVIPVPLQIVPRGFAPSGMLRALAVKSVLSDLEEEVEGEGEGK
ERAKTEAVALSVASGVLCKYTSFVAVEEGGEGGRFGGSKRVYLPLAFVTR
TNMGHDPWGQGRGRGGGRGVGRMLNFAAASSPMMAMAQCRGSAPVMIKEA
AHGGVRSGRSDVGHREEGKGEEKREHGEGKNVLKELEARMRVIKRRDGRA
EEGEEEEQEEKKMKKEKDVWATALVLLYLEKKWGKYEEEWEVAEKKAKRW
LLRRMGGSEEGVQDVMEKAGKVLAAKEFV*

mRNA from alignment at scaffold_30:209504..211212+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9014 ID=mRNA_9014|Name=jgi.p|Nanoce1779_2|633268|organism=Nannochloropsis oceanica|type=mRNA|length=1709bp|location=Sequence derived from alignment at scaffold_30:209504..211212+ (Nannochloropsis oceanica)
ATGCAGGGGAAAATTATGCGGCAAATGAACAGGGCCGTGGGGCCGGCGGT
TGGGGGGAGCAGGGTGGAGGTGGAGGGAGGAAAGGAGGGAAGGGTTGTTG
TCCTCTCAGTGTCGCCCCGAAAACCTCGGCCTCTGTTTACCGGTGGTCGC
CTTCTCTTCTATGCTTTACTGGATCCTAATACTCTCGTTCAGAACAAAAA
GACAAAGGAGAAAGGAAACGAGGGGGAAGAAGGGTGGGTGGATGTCGGCG
ATGAGAAGGAGGGCTGGAGGGAGGAAGGGCTGACTATCCGGGTAAGGGGC
ACCGGGCCGGGAGGGGAGCAAGTGGTAATTCCAGTACCTCTTCAGATTGT
CCCTCGGGGTTTTGCGCCGTCGGGAATGCTGAGGGCCCTGGCCGTGAAAT
CAGTCCTGAGCGACTTGGAGGAGGAGGTGGAGGGAGAGGGGGAAGGGAAG
GAGAGGGCAAAGACAGAGGCGGTGGCTCTGTCGGTCGCAAGTGGGGTTTT
ATGCAAGTACACTTCGTTTGTGGCTGTGGAAGAAGGGGGGGAGGGCGGGA
GGTTCGGAGGGTCTAAGCGAGTCTATCTTCCTCTGGCGTTCGTGACTCGG
ACAAATATGGGTCATGACCCATGGGGGCAAGGGAGAGGACGAGGAGGAGG
TCGAGGAGTAGGAAGAATGTTGAATTTTGCTGCTGCATCTTCGCCTATGA
TGGCCATGGCGCAATGTCGTGGGTCGGCTCCAGTGATGATAAAGGAAGCT
GCGCATGGAGGGGTTAGGAGCGGTCGTTCTGATGTGGGGCATCGTGGTAT
GCCGCAAAGGCTGGGAAAGATGGCGATGACAGCTTCATGTGACGTTTCCA
GTGTTGCTCCAGTTTCCTCCACGGTCGCTCGTGACGTCCCAGGCAATGGT
GAAAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCCAGAGGGTTGA
TCACGTGTCGTTGGTGGCCCGGCAGAGGGCATCAGGTGCATGGGAGTGGG
ACGAAGAGTTATTGTTCTCCATGCTTTTTGCAGAGGAGGGGAAGGGTGAG
GAAAAAAGAGAGCACGGGGAGGGAAAAAATGTCTTGAAGGAGCTCGAGGC
ACGGATGCGTGTGATAAAGCGAAGGGACGGAAGGGCGGAGGAAGGGGAGG
AGGAGGAGCAGGAAGAGAAAAAGATGAAGAAGGAGAAGGATGTATGGGCC
ACAGCATTGGTCTTGCTATACTTGGAGAAGAAATGGGGGAAGTATGAAGA
AGAGTGGGAGGTGGCGGAGAAGAAGGCAAAACGATGGTTGTTGCGCAGGA
TGGGAGGGAGCGAGGAAGGGGTACAGGACGTGATGGAGAAGGCTGGGAAG
GTCTTGGCGGCGAAAGAATTTGTTTAACTAATAGGGTTTCGTTAAAAGAA
TGAGGAGGGAGGCACTGAGGACAAGGAAAGAGTCAAGGGGAAGAGGGAAG
CACCAGGGGCCCCGTACGTGTCAAAAAAGGCAAGGAAAGGTCCAAAGAGG
GGAGGGAAGCAGTAGTTGATTGATGCTACACATTGAATGGAAGCAAGATG
TAGATAGAATGCATGCATATGAATGAGATATGAGTGCTTGTGTCTGTCCG
GGGGGCTGAGATCGCTCTCCCTTTCGAATCACGGTGTATGACAACAGGGA
CGAAAGGACGAAATCAGTGTGTATAAAAAGTGGGAAACAACAATAAGAGG
CGAAGCAGC

Coding sequence (CDS) from alignment at scaffold_30:209504..211212+

>mRNA_9014 ID=mRNA_9014|Name=jgi.p|Nanoce1779_2|633268|organism=Nannochloropsis oceanica|type=CDS|length=2280bp|location=Sequence derived from alignment at scaffold_30:209504..211212+ (Nannochloropsis oceanica)
ATGCAGGGGAAAATTATGCGGCAAATGAACAGGGCCGTGGGGCCGGCGGT
TGGGGGGAGCAGGGTGGAGGTGGAGGGAGGAAAGGAGGGAAGGGTTGTTG
TCCTCTCAGTGTCGCCCCGAAAACCTCGGCCTCTGTTTACCGGTGGTCGC
CTTCTCTTCTATGCTTTACTGGATCCTAATACTCTCGTTCAGAACAAAAA
GACAAAGGAGAAAGGAAACGAGGGGGAAGAAGGGTGGGTGGATGTCGGCG
ATGAGAAGGAGGGCTGGAGGGAGGAAGGGCTGACTATCCGGGTAAGGGGC
ACCGGGCCGGGAGGGGAGCAAGTGGTAATTCCAGTACCTCTTCAGATTGT
CCCTCGGGGTTTTGCGCCGTCGGGAATGCTGAGGGCCCTGGCCGTGAAAT
CAGTCCTGAGCGACTTGGAGGAGGAGGTGGAGGGAGAGGGGGAAGGGAAG
GAGAGGGCAAAGACAGAGGCGGTGGCTCTGTCGGTCGCAAGTGGGGTTTT
ATGCAAGTACACTTCGTTTGTGGCTGTGGAAGAAGGGGGGGAGGGCGGGA
GGTTCGGAGGGTCTAAGCGAGTCTATCTTCCTCTGGCGTTCGTGACTCGG
ACAAATATGGGTCATGACCCATGGGGGCAAGGGAGAGGACGAGGAGGAGG
TCGAGGAGTAGGAAGAATGTTGAATTTTGCTGCTGCATCTTCGCCTATGA
TGGCCATGGCGCAATGTCGTGGGTCGGCTCCAGTGATGATAAAGGAAGCT
GCGCATGGAGGGGTTAGGAGCGGTCGTTCTGATGTGGGGCATCGTGAGGA
GGGGAAGGGTGAGGAAAAAAGAGAGCACGGGGAGGGAAAAAATGTCTTGA
AGGAGCTCGAGGCACGGATGCGTGTGATAAAGCGAAGGGACGGAAGGGCG
GAGGAAGGGGAGGAGGAGGAGCAGGAAGAGAAAAAGATGAAGAAGGAGAA
GGATGTATGGGCCACAGCATTGGTCTTGCTATACTTGGAGAAGAAATGGG
GGAAGTATGAAGAAGAGTGGGAGGTGGCGGAGAAGAAGGCAAAACGATGG
TTGTTGCGCAGGATGGGAGGGAGCGAGGAAGGGGTACAGGACGTGATGGA
GAAGGCTGGGAAGGTCTTGGCGGCGAAAGAATTTGTTTAAATGCAGGGGA
AAATTATGCGGCAAATGAACAGGGCCGTGGGGCCGGCGGTTGGGGGGAGC
AGGGTGGAGGTGGAGGGAGGAAAGGAGGGAAGGGTTGTTGTCCTCTCAGT
GTCGCCCCGAAAACCTCGGCCTCTGTTTACCGGTGGTCGCCTTCTCTTCT
ATGCTTTACTGGATCCTAATACTCTCGTTCAGAACAAAAAGACAAAGGAG
AAAGGAAACGAGGGGGAAGAAGGGTGGGTGGATGTCGGCGATGAGAAGGA
GGGCTGGAGGGAGGAAGGGCTGACTATCCGGGTAAGGGGCACCGGGCCGG
GAGGGGAGCAAGTGGTAATTCCAGTACCTCTTCAGATTGTCCCTCGGGGT
TTTGCGCCGTCGGGAATGCTGAGGGCCCTGGCCGTGAAATCAGTCCTGAG
CGACTTGGAGGAGGAGGTGGAGGGAGAGGGGGAAGGGAAGGAGAGGGCAA
AGACAGAGGCGGTGGCTCTGTCGGTCGCAAGTGGGGTTTTATGCAAGTAC
ACTTCGTTTGTGGCTGTGGAAGAAGGGGGGGAGGGCGGGAGGTTCGGAGG
GTCTAAGCGAGTCTATCTTCCTCTGGCGTTCGTGACTCGGACAAATATGG
GTCATGACCCATGGGGGCAAGGGAGAGGACGAGGAGGAGGTCGAGGAGTA
GGAAGAATGTTGAATTTTGCTGCTGCATCTTCGCCTATGATGGCCATGGC
GCAATGTCGTGGGTCGGCTCCAGTGATGATAAAGGAAGCTGCGCATGGAG
GGGTTAGGAGCGGTCGTTCTGATGTGGGGCATCGTGAGGAGGGGAAGGGT
GAGGAAAAAAGAGAGCACGGGGAGGGAAAAAATGTCTTGAAGGAGCTCGA
GGCACGGATGCGTGTGATAAAGCGAAGGGACGGAAGGGCGGAGGAAGGGG
AGGAGGAGGAGCAGGAAGAGAAAAAGATGAAGAAGGAGAAGGATGTATGG
GCCACAGCATTGGTCTTGCTATACTTGGAGAAGAAATGGGGGAAGTATGA
AGAAGAGTGGGAGGTGGCGGAGAAGAAGGCAAAACGATGGTTGTTGCGCA
GGATGGGAGGGAGCGAGGAAGGGGTACAGGACGTGATGGAGAAGGCTGGG
AAGGTCTTGGCGGCGAAAGAATTTGTTTAA

Synonyms

Publications