jgi.p|Nanoce1779_2|574565, mRNA_901 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574565
Unique Name	mRNA_901
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3235
Alignment location	scaffold_2:695109..698343 -

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Properties


Property Name	Value
TranscriptId	574651
Track	FilteredModels2
ProteinId	574565

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:695109..698343 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574565	gene_901	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574565	mRNA_901-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_901	CDS_901	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:695109..698343-
coding sequence from alignment at scaffold_2:695109..698343-

mRNA sequence

>mRNA_901 ID=mRNA_901|Name=jgi.p|Nanoce1779_2|574565|organism=Nannochloropsis oceanica|type=mRNA|length=3235bp
ACAGGGCTTAGCTACAGTAACCAAAAAATGGACATTGTAAACCGCCCTTT
GGGCGCGGCCGAGGAGACCGTCATGACGCCCACGGGCGCAGGACCGGAGC
CGGTCAACATCAGAGAGTACGAGGCGTATGCGAAAGCGACTCTTCCGAAA
AACGCGTTTGACTACTACGCCAGCGGGGCGAACGACATGATCACCCTCCG
CGAGAACCGAGCGGCATTTGAACGCTTGCGTATGCGCCCTCGCATCTTGC
GGGACGTGAGCGAGGTTGACACCGCCACCACCATATTGGGGGAGCCAGTG
GCTTACCCCATTTGCGTGGCGCCTACCGCCATGCAGCGTATGGCCAACCA
TGAGGGTGAACTTGCCACTGCACGTGCTTGTGCCCGGCAGAAAACTCTCA
TGACCTTGTCTTCCTGGTCGACGACGTCCGTTGAAGACGTGGCGGCGGTT
GGGGTGGGAGCGGCTAAGTGGTTCCAGCTCTACGTCTACAAGGATCGCGA
GCTGACGGCCGAGCTAGCTCGACGAGCGGAGCGAGCGGGGTACAAAGCCT
TGGCGATCACAGTGGACACACCTGTATTGGGTAGACGGGAGGCGGACGTA
CGAAATCGCTTCAAGCTGCCTGGGCACTTAACGATGGCAAATTTTGCGAG
CGAGGGAGGGTCGCATGCGGAAGGCACCAAGGACGGAGGGAAGGACTCGG
GATTGGCGGCGTATGTGGCGTCACTCATTGATCGAACGCTCCAGTGGAAG
GATGTACAATGGCTGCGCAGCGTATGCAACCTACCAATCGTGGTCAAGGG
TGTCATGACACCCGAGGACGCCCTCATGGCGATGCAGTGTGGGGTGGACG
CCATCTGGGTCTCCAACCACGGCGCCCGTCAGCTCGACACGGTGGCTTCC
ACCATTGAGCTTCTTCCTGATATAGTCAAGGCTGTCAACGGTCGCTGCGA
GGTGTATCTGGATGGCGGTGTGTGCCGCGGGACGGATGCATTCAAGGCCC
TGGCATTGGGAGCACGTGCTGTTTTTATTGGCCGGCCGGTGCTTTGGGGC
TTGGCGCACAGCGGGGAAGAAGGCGTGTACCAGGTGTTGGAGTTGTTGAA
GAAAGAGTTTGAGATGGCGATGCGGTTAACGGGGTGCACCAAGCTCTCGG
ACATCCAGCGAGCGATGGTCACGCACGTGGCCTCGTACCAGTCAAAGATC
TAATGCACGAAAATATGTGTTGAGGGCAAAAGAGAGAGCGCAAGTAGATA
GCCTGGCAAGAGCGCACGAATAGAGGGGGGGGGAAACGTGGAGATGAACA
GTCGTATAGGAAAGAAACAGGGCAGAAGGATGGAAGAAGCAGAGAACATA
AAAAAGAAAGAACACTCAGCAGCTGGCGGTTGAAAGGACAAGAGGAAAAA
TATGGCAGAAGGGAAAAAGCACTTTATGAGTGAGTTGGTAGCTCCTCACC
TTCAGATGAGGCTCTTAGGAACGGACAGATTGATGATTGGAACAAAATCC
CCTGGGCGTCCGTGTCCGGGAGGAAGACAGCAGGAGGAAGAAAGGAGGAT
GACGAGCTTTATATACATTGTGTTTGTCATCCACTGCGATATTGGAGCGT
CAAGTGTGATTGTGCGCAAGGATTAGAAGCGTACAATACGGGAGAAAGAA
TAGAAAGGAGTTGTTGTGGAGTAGGTGCAGAGAAAAAGGCCAGATAAGTG
AATGGATGTCATGTTTGTAAGTTCTGTGTGCGTGTATGTGCGCGTACGTG
CACGCGCCCGCGTTCTGGTATTTCCCCTTTTTTTAATCTATATAAATTTA
TCATTATCCTAGTGGTCTACGCACCAAAACCTGTGTGTAAGACCAAGTTC
AACAGAGGATGAAGGGCTACTACGGGTCCATTGGTCGGAGATGAATAAAA
ACACACATGTGAGCACATGACGTACGAGAACCATTTTGTCAAGCATTGTG
TTGCTTATCCGCTTTGCTAGATTTTTAAAATCTCATTTGTCTTTGTCGCG
GGTCGAACTTGTTTGTCACTTTCTCTCCTGTCTCCCTTTCCTATTCCATC
GTACTAAGGGCACGCCAAACAAGACAGAGACAACATATTTGATCCGTCAA
ACATTCTTTTAAAAAAGAAACATCATAAACATTTCTTTGTACATAAACAA
ACGGGGCACAAGCCCGCTCAATCTTTTCCTTTCCTCATCCTCCCTCCCTC
CATATCATAGCTGACCCACCGGTGCATTCATCTCCCAAAGCTGGTGCAAC
AACGCATGGAGCTCCTCACTAACGCTTACCTTGTACGGCGTAGGATTAAT
GTGCCTCAAAACATCCTCTCGGATGCCCTTCAACTGATCCATCACGAACT
CTCTACTTTCTCCCAATGTCCGCAAGGCCCCTGGTTGAATGCCACCCGCC
TGTCCGTCCCAAACCAGCTTAAGCAACGGTTCGACGGTGGAGGGTGTGAC
ATAAGCACGCTTCTTCGAGTCGAACGGATGCCGACACAATCGGCGCTGCC
CTGGTTTTGGCGCGGCTTCACCGTTTTTAGTCATGAAATCCACCACGGCC
ACGCCTGATTCGTTGAAAAAGCGATAGAGGTCCTTCCGACTCGGCAAGGT
AACTTTCTCTACTTCATTAGAGATCTTGATCCGTGGTTTCCCGCAGATCT
CCACCAGCTTATAAACACATCCCAAGGCCGGCTGTGCCTGACACGTGACC
AAGTGAGTTCCCACGCCGAAGGCATCGATGGAATGTCCCTGCTTACTCAA
GGCGTACAACACATCTTCATTGATATTATTACTCGCCACAATCCGAAGCT
TTTCAAACGTCGGCCGTCCGTGAGTCGACGCCACCCTGGTAAACCACGCC
CTGATCCGCTTTGACAAGTAAGCCAAGTCTCCCGAGTCCAACCGTACCCC
CACCGGCGCATACCCCAAATCATGCAACGCCAAAGCAACACTCAGAAAAT
TGGGTATCCCCGAATTGAGCGTATCGTAGGTATCGACCAAACACAGAAAG
TTATCGGGCCATGACTGAGCATAAGCGACAAAGGCCGCAAACTCCCCCAA
ATTACTATCGGAAAAGCCCAAGGTGGACCGGTATGCCAACGCTTTCTCTA
CCAGATTTTGATCGTCTAAAAAGGGATTCTGGAGGTCATCCAGGCTCACG
TACGATTGCACATACGCATGAGCGTGGGTGCCACTGATGGCGATGCTGAG
CAAACGGCCCGCAAGCACATTGCTCGTCCCATCGA

protein sequence of jgi.p|Nanoce1779_2|574565

>mRNA_901-protein ID=mRNA_901-protein|Name=jgi.p|Nanoce1779_2|574565|organism=Nannochloropsis oceanica|type=polypeptide|length=392bp
MDIVNRPLGAAEETVMTPTGAGPEPVNIREYEAYAKATLPKNAFDYYASG
ANDMITLRENRAAFERLRMRPRILRDVSEVDTATTILGEPVAYPICVAPT
AMQRMANHEGELATARACARQKTLMTLSSWSTTSVEDVAAVGVGAAKWFQ
LYVYKDRELTAELARRAERAGYKALAITVDTPVLGRREADVRNRFKLPGH
LTMANFASEGGSHAEGTKDGGKDSGLAAYVASLIDRTLQWKDVQWLRSVC
NLPIVVKGVMTPEDALMAMQCGVDAIWVSNHGARQLDTVASTIELLPDIV
KAVNGRCEVYLDGGVCRGTDAFKALALGARAVFIGRPVLWGLAHSGEEGV
YQVLELLKKEFEMAMRLTGCTKLSDIQRAMVTHVASYQSKI*

mRNA from alignment at scaffold_2:695109..698343-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_901 ID=mRNA_901|Name=jgi.p|Nanoce1779_2|574565|organism=Nannochloropsis oceanica|type=mRNA|length=3235bp|location=Sequence derived from alignment at scaffold_2:695109..698343- (Nannochloropsis oceanica)
ACAGGGCTTAGCTACAGTAACCAAAAAATGGACATTGTAAACCGCCCTTT
GGGCGCGGCCGAGGAGACCGTCATGACGCCCACGGGCGCAGGACCGGAGC
CGGTCAACATCAGAGAGTACGAGGCGTATGCGAAAGCGACTCTTCCGAAA
AACGCGTTTGACTACTACGCCAGCGGGGCGAACGACATGATCACCCTCCG
CGAGAACCGAGCGGCATTTGAACGCTTGCGTATGCGCCCTCGCATCTTGC
GGGACGTGAGCGAGGTTGACACCGCCACCACCATATTGGGGGAGCCAGTG
GCTTACCCCATTTGCGTGGCGCCTACCGCCATGCAGCGTATGGCCAACCA
TGAGGGTGAACTTGCCACTGCACGTGCTTGTGCCCGGCAGAAAACTCTCA
TGACCTTGTCTTCCTGGTCGACGACGTCCGTTGAAGACGTGGCGGCGGTT
GGGGTGGGAGCGGCTAAGTGGTTCCAGCTCTACGTCTACAAGGATCGCGA
GCTGACGGCCGAGCTAGCTCGACGAGCGGAGCGAGCGGGGTACAAAGCCT
TGGCGATCACAGTGGACACACCTGTATTGGGTAGACGGGAGGCGGACGTA
CGAAATCGCTTCAAGCTGCCTGGGCACTTAACGATGGCAAATTTTGCGAG
CGAGGGAGGGTCGCATGCGGAAGGCACCAAGGACGGAGGGAAGGACTCGG
GATTGGCGGCGTATGTGGCGTCACTCATTGATCGAACGCTCCAGTGGAAG
GATGTACAATGGCTGCGCAGCGTATGCAACCTACCAATCGTGGTCAAGGG
TGTCATGACACCCGAGGACGCCCTCATGGCGATGCAGTGTGGGGTGGACG
CCATCTGGGTCTCCAACCACGGCGCCCGTCAGCTCGACACGGTGGCTTCC
ACCATTGAGCTTCTTCCTGATATAGTCAAGGCTGTCAACGGTCGCTGCGA
GGTGTATCTGGATGGCGGTGTGTGCCGCGGGACGGATGCATTCAAGGCCC
TGGCATTGGGAGCACGTGCTGTTTTTATTGGCCGGCCGGTGCTTTGGGGC
TTGGCGCACAGCGGGGAAGAAGGCGTGTACCAGGTGTTGGAGTTGTTGAA
GAAAGAGTTTGAGATGGCGATGCGGTTAACGGGGTGCACCAAGCTCTCGG
ACATCCAGCGAGCGATGGTCACGCACGTGGCCTCGTACCAGTCAAAGATC
TAATGCACGAAAATATGTGTTGAGGGCAAAAGAGAGAGCGCAAGTAGATA
GCCTGGCAAGAGCGCACGAATAGAGGGGGGGGGAAACGTGGAGATGAACA
GTCGTATAGGAAAGAAACAGGGCAGAAGGATGGAAGAAGCAGAGAACATA
AAAAAGAAAGAACACTCAGCAGCTGGCGGTTGAAAGGACAAGAGGAAAAA
TATGGCAGAAGGGAAAAAGCACTTTATGAGTGAGTTGGTAGCTCCTCACC
TTCAGATGAGGCTCTTAGGAACGGACAGATTGATGATTGGAACAAAATCC
CCTGGGCGTCCGTGTCCGGGAGGAAGACAGCAGGAGGAAGAAAGGAGGAT
GACGAGCTTTATATACATTGTGTTTGTCATCCACTGCGATATTGGAGCGT
CAAGTGTGATTGTGCGCAAGGATTAGAAGCGTACAATACGGGAGAAAGAA
TAGAAAGGAGTTGTTGTGGAGTAGGTGCAGAGAAAAAGGCCAGATAAGTG
AATGGATGTCATGTTTGTAAGTTCTGTGTGCGTGTATGTGCGCGTACGTG
CACGCGCCCGCGTTCTGGTATTTCCCCTTTTTTTAATCTATATAAATTTA
TCATTATCCTAGTGGTCTACGCACCAAAACCTGTGTGTAAGACCAAGTTC
AACAGAGGATGAAGGGCTACTACGGGTCCATTGGTCGGAGATGAATAAAA
ACACACATGTGAGCACATGACGTACGAGAACCATTTTGTCAAGCATTGTG
TTGCTTATCCGCTTTGCTAGATTTTTAAAATCTCATTTGTCTTTGTCGCG
GGTCGAACTTGTTTGTCACTTTCTCTCCTGTCTCCCTTTCCTATTCCATC
GTACTAAGGGCACGCCAAACAAGACAGAGACAACATATTTGATCCGTCAA
ACATTCTTTTAAAAAAGAAACATCATAAACATTTCTTTGTACATAAACAA
ACGGGGCACAAGCCCGCTCAATCTTTTCCTTTCCTCATCCTCCCTCCCTC
CATATCATAGCTGACCCACCGGTGCATTCATCTCCCAAAGCTGGTGCAAC
AACGCATGGAGCTCCTCACTAACGCTTACCTTGTACGGCGTAGGATTAAT
GTGCCTCAAAACATCCTCTCGGATGCCCTTCAACTGATCCATCACGAACT
CTCTACTTTCTCCCAATGTCCGCAAGGCCCCTGGTTGAATGCCACCCGCC
TGTCCGTCCCAAACCAGCTTAAGCAACGGTTCGACGGTGGAGGGTGTGAC
ATAAGCACGCTTCTTCGAGTCGAACGGATGCCGACACAATCGGCGCTGCC
CTGGTTTTGGCGCGGCTTCACCGTTTTTAGTCATGAAATCCACCACGGCC
ACGCCTGATTCGTTGAAAAAGCGATAGAGGTCCTTCCGACTCGGCAAGGT
AACTTTCTCTACTTCATTAGAGATCTTGATCCGTGGTTTCCCGCAGATCT
CCACCAGCTTATAAACACATCCCAAGGCCGGCTGTGCCTGACACGTGACC
AAGTGAGTTCCCACGCCGAAGGCATCGATGGAATGTCCCTGCTTACTCAA
GGCGTACAACACATCTTCATTGATATTATTACTCGCCACAATCCGAAGCT
TTTCAAACGTCGGCCGTCCGTGAGTCGACGCCACCCTGGTAAACCACGCC
CTGATCCGCTTTGACAAGTAAGCCAAGTCTCCCGAGTCCAACCGTACCCC
CACCGGCGCATACCCCAAATCATGCAACGCCAAAGCAACACTCAGAAAAT
TGGGTATCCCCGAATTGAGCGTATCGTAGGTATCGACCAAACACAGAAAG
TTATCGGGCCATGACTGAGCATAAGCGACAAAGGCCGCAAACTCCCCCAA
ATTACTATCGGAAAAGCCCAAGGTGGACCGGTATGCCAACGCTTTCTCTA
CCAGATTTTGATCGTCTAAAAAGGGATTCTGGAGGTCATCCAGGCTCACG
TACGATTGCACATACGCATGAGCGTGGGTGCCACTGATGGCGATGCTGAG
CAAACGGCCCGCAAGCACATTGCTCGTCCCATCGA

Coding sequence (CDS) from alignment at scaffold_2:695109..698343-

>mRNA_901 ID=mRNA_901|Name=jgi.p|Nanoce1779_2|574565|organism=Nannochloropsis oceanica|type=CDS|length=1176bp|location=Sequence derived from alignment at scaffold_2:695109..698343- (Nannochloropsis oceanica)
ATGGACATTGTAAACCGCCCTTTGGGCGCGGCCGAGGAGACCGTCATGAC
GCCCACGGGCGCAGGACCGGAGCCGGTCAACATCAGAGAGTACGAGGCGT
ATGCGAAAGCGACTCTTCCGAAAAACGCGTTTGACTACTACGCCAGCGGG
GCGAACGACATGATCACCCTCCGCGAGAACCGAGCGGCATTTGAACGCTT
GCGTATGCGCCCTCGCATCTTGCGGGACGTGAGCGAGGTTGACACCGCCA
CCACCATATTGGGGGAGCCAGTGGCTTACCCCATTTGCGTGGCGCCTACC
GCCATGCAGCGTATGGCCAACCATGAGGGTGAACTTGCCACTGCACGTGC
TTGTGCCCGGCAGAAAACTCTCATGACCTTGTCTTCCTGGTCGACGACGT
CCGTTGAAGACGTGGCGGCGGTTGGGGTGGGAGCGGCTAAGTGGTTCCAG
CTCTACGTCTACAAGGATCGCGAGCTGACGGCCGAGCTAGCTCGACGAGC
GGAGCGAGCGGGGTACAAAGCCTTGGCGATCACAGTGGACACACCTGTAT
TGGGTAGACGGGAGGCGGACGTACGAAATCGCTTCAAGCTGCCTGGGCAC
TTAACGATGGCAAATTTTGCGAGCGAGGGAGGGTCGCATGCGGAAGGCAC
CAAGGACGGAGGGAAGGACTCGGGATTGGCGGCGTATGTGGCGTCACTCA
TTGATCGAACGCTCCAGTGGAAGGATGTACAATGGCTGCGCAGCGTATGC
AACCTACCAATCGTGGTCAAGGGTGTCATGACACCCGAGGACGCCCTCAT
GGCGATGCAGTGTGGGGTGGACGCCATCTGGGTCTCCAACCACGGCGCCC
GTCAGCTCGACACGGTGGCTTCCACCATTGAGCTTCTTCCTGATATAGTC
AAGGCTGTCAACGGTCGCTGCGAGGTGTATCTGGATGGCGGTGTGTGCCG
CGGGACGGATGCATTCAAGGCCCTGGCATTGGGAGCACGTGCTGTTTTTA
TTGGCCGGCCGGTGCTTTGGGGCTTGGCGCACAGCGGGGAAGAAGGCGTG
TACCAGGTGTTGGAGTTGTTGAAGAAAGAGTTTGAGATGGCGATGCGGTT
AACGGGGTGCACCAAGCTCTCGGACATCCAGCGAGCGATGGTCACGCACG
TGGCCTCGTACCAGTCAAAGATCTAA

Synonyms

Publications