jgi.p|Nanoce1779_2|604854, mRNA_9007 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604854
Unique NamemRNA_9007
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1214
Alignment locationscaffold_30:183131..184764 -

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Properties
Property NameValue
TranscriptId604940
TrackFilteredModels2
ProteinId604854
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:183131..184764 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604854gene_9007Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604854mRNA_9007-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9007CDS_9007Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9007 ID=mRNA_9007|Name=jgi.p|Nanoce1779_2|604854|organism=Nannochloropsis oceanica|type=mRNA|length=1214bp
AGGTCACGATCTTTCTCTCTGTCACCCCCGCCCTCGGCTTTCTTGCTCCT
TCGGCCACCCTATCCACCTTCCGCTGCACCAGCAGTAAGAGCGGCAGCAC
CAGCAGGAGCCACAGAAGGAGCAGCAGCAGGACCACCATGGCCGCAGGAA
AGGATGCAACGCTCTATGACTTTCCCGTGTCCAACAATGGTGGGCGATGC
CGCGTGGTAATCTACGACAAGGGTATTCAAGATAAGATCGAGATCAAAAA
GCCCGACGGCGCCTTGACAGAAATTAATCCCCAAGGCAAAGTGCCCGTGC
TCATCGACCACTCCCTCAACGAATTTCAAATTTTTGAATCCGACACCATT
CTGCGTCACCTGGTGGGAAAATATGAAGGAACAGGTCCTTCCTACCTCCC
GTCCTCCCTGGCCGCGAGGACCAAGTCGGACTTAATTTGTCGGTTCCATG
ACATGTACATAACAACCATCCAAGGGTGCATGTACAAGGCCAGCCCTCCG
TTCGGGGTATTCGATAACCGGGAGGATGCCTTGATAGAGCTGAAGAAGCA
GATGAAATTGCTGGAGGGGATGGTGGATGGGGAAGGTCCGTTTCTGTGTG
GGAAGGAGAAGAGCATGGCAGACGCTACCTTGTTCTGCACGGGGGTGTTC
CTCGAGCAGATATTACCGAATCATTTCGGGTGGACGTACCAGGAGGTGTT
TGGGCCCCTCCTGACTAAATGGTGGGAGAATCTACTGGCAACAGAGTCGG
CGTTTCAGAAGGTGCACTCCGAGATCATCCTGGGGATCCAAGGCTGGGAG
GAGAAACGGCGGTGGATGACGATCCTCGGGGCTGACTTTCAGGACTTGGG
GCCGGCCACCATCTTTGACCGGATCATTAAGAAGGAGGTGCCCTCCGATG
TGGTGTATGAAAACGACAAAGTTCTCGCGTTCCGTGACATTGCCCCCCAG
GCCCCCACCCATATCCTCGTCATTCCCAAGCGGCGTCAAGGCCTGACGTC
CCTCCGCAAGGCAACGGAAGAACAGAAGGGCGTGCTGGGAGAAATGATGC
TGGCGGTGGCCAAGATCGTGAGGCAGGAAGGGATCGAGGGAGGGTATAGG
TTGGTCGTCAACGATGGAGAGGAGGCCGGTCAGACGGTGAATCATTTGCA
CATTCATATCCTGGCGGGACGGCCTTTGAAGTGGCCTCCTGGGTAATTGA
GAGGGAGGGAGGAG
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protein sequence of jgi.p|Nanoce1779_2|604854

>mRNA_9007-protein ID=mRNA_9007-protein|Name=jgi.p|Nanoce1779_2|604854|organism=Nannochloropsis oceanica|type=polypeptide|length=353bp
MAAGKDATLYDFPVSNNGGRCRVVIYDKGIQDKIEIKKPDGALTEINPQG
KVPVLIDHSLNEFQIFESDTILRHLVGKYEGTGPSYLPSSLAARTKSDLI
CRFHDMYITTIQGCMYKASPPFGVFDNREDALIELKKQMKLLEGMVDGEG
PFLCGKEKSMADATLFCTGVFLEQILPNHFGWTYQEVFGPLLTKWWENLL
ATESAFQKVHSEIILGIQGWEEKRRWMTILGADFQDLGPATIFDRIIKKE
VPSDVVYENDKVLAFRDIAPQAPTHILVIPKRRQGLTSLRKATEEQKGVL
GEMMLAVAKIVRQEGIEGGYRLVVNDGEEAGQTVNHLHIHILAGRPLKWP
PG*
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mRNA from alignment at scaffold_30:183131..184764-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9007 ID=mRNA_9007|Name=jgi.p|Nanoce1779_2|604854|organism=Nannochloropsis oceanica|type=mRNA|length=1634bp|location=Sequence derived from alignment at scaffold_30:183131..184764- (Nannochloropsis oceanica)
AGGTCACGATCTTTCTCTCTGTCACCCCCGCCCTCGGCTTTCTTGCTCCT
TCGGCCACCCTATCCACCTTCCGCTGCACCAGCAGTAAGAGCGGCAGCAC
CAGCAGGAGCCACAGAAGGAGCAGCAGCAGGACCACCATGGCCGCAGGAA
AGGATGCAACGCTCTATGACTTTCCCGTGTCCAACAATGGTGGGCGATGC
CGCGTGGTAATCTACGACAAGGGTATTCAAGATAAGGTATACACGGAAAT
AATTATCAGAGCGCCTTCTACCCCCCTCCCTCCCTCCCTCCTGTTTTCCT
CGAAACAGTCGAGATCAACAAAGCCGACTATGCCTTGTCCGGAACCATCG
CCCGTTGCTCATCTTCTCCTCTCTCCTCCCCTCCTTTTCTCCCTCCCTCT
TTTACCGGAAACAGATCGAGATCAAAAAGCCCGACGGCGCCTTGACAGAA
ATTAATCCCCAAGGCAAAGTGCCCGTGCTCATCGACCACTCCCTCAACGA
ATTTCAAATTTTTGAATCCGACACCATTCTGCGTCACCTGGTGGGAAAAT
ATGAAGGAACAGGTCCTTCCTACCTCCCGTCCTCCCTGGCCGCGAGGACC
AAGTCGGACTTAATTTGTCGGTTCCATGACATGTACATAACAACCATCCA
AGGGTGCATGTACAAGGCCAGCCCTCCGTTCGGGGTATTCGATAACCGGG
AGGATGCCTTGATAGAGCTGAAGAAGCAGATGAAATTGCTGGAGGGGATG
GTGGATGGGGAAGGTCCGTTTCTGTGTGGGAAGGAGAAGAGCATGGCAGA
CGCTACCTTGTTCTGCACGGGGGTGTTCCTCGAGCAGATATTACCGAATC
ATTTCGGGTGGACGTACCAGGAGGTGTTTGGGCCCCTCCTGACTAAATGG
TGGGAGAATCTACTGGCAACAGAGTCGGCGTTTCAGAAGGTGGGAGAGTG
CCTGGCCCTCCTTCCTTTCCTCCCTCCCTCCCTCCCTCCCCCCTGCCCGA
CCTCTCTCCCTCGTGCGTATTAATCATGCCTTTCCAACCACTATGTATGA
AATAGCCAAATTAGTCATATATTTCCAACCACTTTGCATAAGAAGCTTCA
AAACCGCACCTTGCACCACCAGGACGAAGACCTAAACATGCCACCACCGC
AACACCACCACCACAACAACCCACCCGACAGGTGCACTCCGAGATCATCC
TGGGGATCCAAGGCTGGGAGGAGAAACGGCGGTGGATGACGATCCTCGGG
GCTGACTTTCAGGACTTGGGGCCGGCCACCATCTTTGACCGGATCATTAA
GAAGGAGGTGCCCTCCGATGTGGTGTATGAAAACGACAAAGTTCTCGCGT
TCCGTGACATTGCCCCCCAGGCCCCCACCCATATCCTCGTCATTCCCAAG
CGGCGTCAAGGCCTGACGTCCCTCCGCAAGGCAACGGAAGAACAGAAGGG
CGTGCTGGGAGAAATGATGCTGGCGGTGGCCAAGATCGTGAGGCAGGAAG
GGATCGAGGGAGGGTATAGGTTGGTCGTCAACGATGGAGAGGAGGCCGGT
CAGACGGTGAATCATTTGCACATTCATATCCTGGCGGGACGGCCTTTGAA
GTGGCCTCCTGGGTAATTGAGAGGGAGGGAGGAG
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Coding sequence (CDS) from alignment at scaffold_30:183131..184764-

>mRNA_9007 ID=mRNA_9007|Name=jgi.p|Nanoce1779_2|604854|organism=Nannochloropsis oceanica|type=CDS|length=3177bp|location=Sequence derived from alignment at scaffold_30:183131..184764- (Nannochloropsis oceanica)
GTGCACTCCGAGATCATCCTGGGGATCCAAGGCTGGGAGGAGAAACGGCG
GTGGATGACGATCCTCGGGGCTGACTTTCAGGACTTGGGGCCGGCCACCA
TCTTTGACCGGATCATTAAGAAGGAGGTGCCCTCCGATGTGGTGTATGAA
AACGACAAAGTTCTCGCGTTCCGTGACATTGCCCCCCAGGCCCCCACCCA
TATCCTCGTCATTCCCAAGCGGCGTCAAGGCCTGACGTCCCTCCGCAAGG
CAACGGAAGAACAGAAGGGCGTGCTGGGAGAAATGATGCTGGCGGTGGCC
AAGATCGTGAGGCAGGAAGGGATCGAGGGAGGGTATAGGTTGGTCGTCAA
CGATGGAGAGGAGGCCGGTCAGACGGTGAATCATTTGCACATTCATATCC
TGGCGGGACGGCCTTTGAAGTGGCCTCCTGGGTAAATCGAGATCAAAAAG
CCCGACGGCGCCTTGACAGAAATTAATCCCCAAGGCAAAGTGCCCGTGCT
CATCGACCACTCCCTCAACGAATTTCAAATTTTTGAATCCGACACCATTC
TGCGTCACCTGGTGGGAAAATATGAAGGAACAGGTCCTTCCTACCTCCCG
TCCTCCCTGGCCGCGAGGACCAAGTCGGACTTAATTTGTCGGTTCCATGA
CATGTACATAACAACCATCCAAGGGTGCATGTACAAGGCCAGCCCTCCGT
TCGGGGTATTCGATAACCGGGAGGATGCCTTGATAGAGCTGAAGAAGCAG
ATGAAATTGCTGGAGGGGATGGTGGATGGGGAAGGTCCGTTTCTGTGTGG
GAAGGAGAAGAGCATGGCAGACGCTACCTTGTTCTGCACGGGGGTGTTCC
TCGAGCAGATATTACCGAATCATTTCGGGTGGACGTACCAGGAGGTGTTT
GGGCCCCTCCTGACTAAATGGTGGGAGAATCTACTGGCAACAGAGTCGGC
GTTTCAGAAGATGGCCGCAGGAAAGGATGCAACGCTCTATGACTTTCCCG
TGTCCAACAATGGTGGGCGATGCCGCGTGGTAATCTACGACAAGGGTATT
CAAGATAAGGTGCACTCCGAGATCATCCTGGGGATCCAAGGCTGGGAGGA
GAAACGGCGGTGGATGACGATCCTCGGGGCTGACTTTCAGGACTTGGGGC
CGGCCACCATCTTTGACCGGATCATTAAGAAGGAGGTGCCCTCCGATGTG
GTGTATGAAAACGACAAAGTTCTCGCGTTCCGTGACATTGCCCCCCAGGC
CCCCACCCATATCCTCGTCATTCCCAAGCGGCGTCAAGGCCTGACGTCCC
TCCGCAAGGCAACGGAAGAACAGAAGGGCGTGCTGGGAGAAATGATGCTG
GCGGTGGCCAAGATCGTGAGGCAGGAAGGGATCGAGGGAGGGTATAGGTT
GGTCGTCAACGATGGAGAGGAGGCCGGTCAGACGGTGAATCATTTGCACA
TTCATATCCTGGCGGGACGGCCTTTGAAGTGGCCTCCTGGGTAAATCGAG
ATCAAAAAGCCCGACGGCGCCTTGACAGAAATTAATCCCCAAGGCAAAGT
GCCCGTGCTCATCGACCACTCCCTCAACGAATTTCAAATTTTTGAATCCG
ACACCATTCTGCGTCACCTGGTGGGAAAATATGAAGGAACAGGTCCTTCC
TACCTCCCGTCCTCCCTGGCCGCGAGGACCAAGTCGGACTTAATTTGTCG
GTTCCATGACATGTACATAACAACCATCCAAGGGTGCATGTACAAGGCCA
GCCCTCCGTTCGGGGTATTCGATAACCGGGAGGATGCCTTGATAGAGCTG
AAGAAGCAGATGAAATTGCTGGAGGGGATGGTGGATGGGGAAGGTCCGTT
TCTGTGTGGGAAGGAGAAGAGCATGGCAGACGCTACCTTGTTCTGCACGG
GGGTGTTCCTCGAGCAGATATTACCGAATCATTTCGGGTGGACGTACCAG
GAGGTGTTTGGGCCCCTCCTGACTAAATGGTGGGAGAATCTACTGGCAAC
AGAGTCGGCGTTTCAGAAGATGGCCGCAGGAAAGGATGCAACGCTCTATG
ACTTTCCCGTGTCCAACAATGGTGGGCGATGCCGCGTGGTAATCTACGAC
AAGGGTATTCAAGATAAGGTGCACTCCGAGATCATCCTGGGGATCCAAGG
CTGGGAGGAGAAACGGCGGTGGATGACGATCCTCGGGGCTGACTTTCAGG
ACTTGGGGCCGGCCACCATCTTTGACCGGATCATTAAGAAGGAGGTGCCC
TCCGATGTGGTGTATGAAAACGACAAAGTTCTCGCGTTCCGTGACATTGC
CCCCCAGGCCCCCACCCATATCCTCGTCATTCCCAAGCGGCGTCAAGGCC
TGACGTCCCTCCGCAAGGCAACGGAAGAACAGAAGGGCGTGCTGGGAGAA
ATGATGCTGGCGGTGGCCAAGATCGTGAGGCAGGAAGGGATCGAGGGAGG
GTATAGGTTGGTCGTCAACGATGGAGAGGAGGCCGGTCAGACGGTGAATC
ATTTGCACATTCATATCCTGGCGGGACGGCCTTTGAAGTGGCCTCCTGGG
TAAATCGAGATCAAAAAGCCCGACGGCGCCTTGACAGAAATTAATCCCCA
AGGCAAAGTGCCCGTGCTCATCGACCACTCCCTCAACGAATTTCAAATTT
TTGAATCCGACACCATTCTGCGTCACCTGGTGGGAAAATATGAAGGAACA
GGTCCTTCCTACCTCCCGTCCTCCCTGGCCGCGAGGACCAAGTCGGACTT
AATTTGTCGGTTCCATGACATGTACATAACAACCATCCAAGGGTGCATGT
ACAAGGCCAGCCCTCCGTTCGGGGTATTCGATAACCGGGAGGATGCCTTG
ATAGAGCTGAAGAAGCAGATGAAATTGCTGGAGGGGATGGTGGATGGGGA
AGGTCCGTTTCTGTGTGGGAAGGAGAAGAGCATGGCAGACGCTACCTTGT
TCTGCACGGGGGTGTTCCTCGAGCAGATATTACCGAATCATTTCGGGTGG
ACGTACCAGGAGGTGTTTGGGCCCCTCCTGACTAAATGGTGGGAGAATCT
ACTGGCAACAGAGTCGGCGTTTCAGAAGATGGCCGCAGGAAAGGATGCAA
CGCTCTATGACTTTCCCGTGTCCAACAATGGTGGGCGATGCCGCGTGGTA
ATCTACGACAAGGGTATTCAAGATAAG
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Synonyms
Publications