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Properties
| Property Name | Value |
|---|
| TranscriptId | 604934 |
| Track | FilteredModels2 |
| ProteinId | 604848 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_30 | supercontig | scaffold_30:174067..176177 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9004 ID=mRNA_9004|Name=jgi.p|Nanoce1779_2|604848|organism=Nannochloropsis oceanica|type=mRNA|length=1989bp
CACTGGAGGAGCAGCGGCAGCAATTGTATCAGCAGCAGCAACAACAACAA
CAACAGCAGCCTCCATAATGAACTCCCCCCCTCCCCCCCTCCCTCCCGGC
CACCTCGTCCGTCCCTCCCCGCAACGGCGCTCCAGCGCCGCCGGGCTTGC
AATAAGCAGTAATAACAGTGTCAACAGCAGCGATAGGGGTGGCGATGGGA
GCCGTGTTGGGAGCCGGAACAACAGCAGCAATAATCTCTTGGAGGATGTG
ACGGGGAGGGTGGGCGGGGTGAGTCTCGTCCGTTCACGCACCCCTCCTGC
ACGGGTTCGGAGTGCCTCTCCCGGTCCTGGAGGGATGGATGATAATGGTT
GTGAGGGTGTCCCCACGCCTGGGGATGTGGTGGCGTCGCGGGCGTCGCTT
GGGGGGCTGTCGAGAGACGCGGGCGTTTGGGAGGAGGACGTGCTCCCTTC
CGCGGCGCCTGCGTCCTCTCTCCCGCCCTCCGGTTCTTCAGGTGGCCTTG
CCTTTGCTTCTGAGGAGGATAGTGGGAAAGAAGGGGGGAAGGGAGGAGAG
CTGGAAAAGCCACGGATTACGATGGTAGTGATTGGGCATGTGGACGCGGG
AAAGTCAACGTTAATGGGACAAGTCTTGGTTGCCACTGGCTTGGTCTCCT
CGCGGGAGGTCCGGAAGTACGAACGCGAAGCCCGGGAAATGGGCAAGGCC
TCCTTTTACCTCGCATGGTTGATGGACGAGGATGGGGAGGAGCGGGTCCA
TGGGGTCACCATGGAGGTGGGCCAAAAAGTCATCGAGCTCCCACATCGTG
TTTTGACCCTTTTAGACGCGCCGGGCCACGCGGATTTTATTCCCCAAATG
ATCATGGGTGCAGCACAAGCAGACGTAGCCTTGCTGGTTGTCCCCGCGAC
CACGGGGGAGTTTGAAGCCGGGTTCACAGAGGCCAGCAATGGGCGGGATG
GTCTAGGGCAGGGACAGACGAAGGAACATGCTCTCTTGGCGCGGGCCCTT
GGCGTGACTCAGTTGTTGGTCGCCATTAATAAGTTGGATGTAGCGGAGCC
TCCCTGGTCACAGAGCCGGTACGAAGATATAGTCGGCGCGTTGGGGCCGT
TTCTGGAACAAACGGGGTTTAAGTCTGAACGGATTCGGTATGTCCCTGTG
AGTGGCCTAACGGGCGAGAATGTCAAGGAGGGAGGGAGGGATGGAGGGGG
GCCGCTGGGGGGATGGTACACGGGACCCTCGCTCTTGACGGCCATGGACG
AATTCTTGCCCGCGACCAAGTCTTTGCGCGAAGCCCGAAGCAAGCCGTTG
CGGATGGTGGTAAACGATTATGTACCGGCGGGGAAGAATATAGGGGTTTC
CGTGCGGGTGCTCTCGGGAGGGGTGAAGGCTGGGAGTAAGGTTCTGATTT
TGCCGATTGGGGATGTAGCGACGGTGCGCGCGATTGAAGTGGAAGGCCGT
GGGGCTGAGACCGCTCAGGCCGGGGAGCACGCCGAACTGATGCTGCAAGG
CGTGGATATTGCGCGTATGTCGATAGGGAGTGTGTTGTGTAAAGGGAAGG
CGGCCGTGCCTGTCTCTCGGCGATTCGGCGCGCAGATAACGACCTTGCCG
TCATTAGGGACCCCAATACTAAGGGGTACTCAGTTTCAATTGCATTTGCA
GAGTCTGGAGATGCCTGTGAATACCACGCGGCTGATCGCGACATTGCACA
AGCCCTTGTCGGAAGAGGGGATGGCCTCGGCGGAGATAAAGCAGGAGCGA
CCGCGGTGTCTGACTGGGGGTTTATTGGCACTGGTGGAATTAAGGTGTCA
GCGGCCCATGTGTGTGGAGCGGTACGACGAGTCGCGCTCGCTGGGTCGGT
TTATTTTGCGACAGAAGGGCGAGACGGTAGCCGTAGGTATGGTCACAGAG
ATTCTCCCGGACACATGATAACAGTCGTTCTACACGGTCCGGAAAGGTTG
GAAAAAATGGGAAAAAGTAGGCTTAGGGTTTCGATCGCG back to topprotein sequence of jgi.p|Nanoce1779_2|604848 >mRNA_9004-protein ID=mRNA_9004-protein|Name=jgi.p|Nanoce1779_2|604848|organism=Nannochloropsis oceanica|type=polypeptide|length=617bp
MNSPPPPLPPGHLVRPSPQRRSSAAGLAISSNNSVNSSDRGGDGSRVGSR
NNSSNNLLEDVTGRVGGVSLVRSRTPPARVRSASPGPGGMDDNGCEGVPT
PGDVVASRASLGGLSRDAGVWEEDVLPSAAPASSLPPSGSSGGLAFASEE
DSGKEGGKGGELEKPRITMVVIGHVDAGKSTLMGQVLVATGLVSSREVRK
YEREAREMGKASFYLAWLMDEDGEERVHGVTMEVGQKVIELPHRVLTLLD
APGHADFIPQMIMGAAQADVALLVVPATTGEFEAGFTEASNGRDGLGQGQ
TKEHALLARALGVTQLLVAINKLDVAEPPWSQSRYEDIVGALGPFLEQTG
FKSERIRYVPVSGLTGENVKEGGRDGGGPLGGWYTGPSLLTAMDEFLPAT
KSLREARSKPLRMVVNDYVPAGKNIGVSVRVLSGGVKAGSKVLILPIGDV
ATVRAIEVEGRGAETAQAGEHAELMLQGVDIARMSIGSVLCKGKAAVPVS
RRFGAQITTLPSLGTPILRGTQFQLHLQSLEMPVNTTRLIATLHKPLSEE
GMASAEIKQERPRCLTGGLLALVELRCQRPMCVERYDESRSLGRFILRQK
GETVAVGMVTEILPDT* back to topmRNA from alignment at scaffold_30:174067..176177- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9004 ID=mRNA_9004|Name=jgi.p|Nanoce1779_2|604848|organism=Nannochloropsis oceanica|type=mRNA|length=2111bp|location=Sequence derived from alignment at scaffold_30:174067..176177- (Nannochloropsis oceanica)
CACTGGAGGAGCAGCGGCAGCAATTGTATCAGCAGCAGCAACAACAACAA
CAACAGCAGCCTCCATAATGAACTCCCCCCCTCCCCCCCTCCCTCCCGGC
CACCTCGTCCGTCCCTCCCCGCAACGGCGCTCCAGCGCCGCCGGGCTTGC
AATAAGCAGTAATAACAGTGTCAACAGCAGCGATAGGGGTGGCGATGGGA
GCCGTGTTGGGAGCCGGAACAACAGCAGCAATAATCTCTTGGAGGATGTG
ACGGGGAGGGTGGGCGGGGTGAGTCTCGTCCGTTCACGCACCCCTCCTGC
ACGGGTTCGGAGTGCCTCTCCCGGTCCTGGAGGGATGGATGATAATGGTT
GTGAGGGTGTCCCCACGCCTGGGGATGTGGTGGCGTCGCGGGCGTCGCTT
GGGGGGCTGTCGAGAGACGCGGGCGTTTGGGAGGAGGACGTGCTCCCTTC
CGCGGCGCCTGCGTCCTCTCTCCCGCCCTCCGGTTCTTCAGGTGGCCTTG
CCTTTGCTTCTGAGGAGGATAGTGGGAAAGAAGGGGGGAAGGGAGGAGAG
CTGGAAAAGCCACGGATTACGATGGTAGTGATTGGGCATGTGGACGCGGG
AAAGTCAACGTTAATGGGACAAGTCTTGGTTGCCACTGGCTTGGTCTCCT
CGCGGGAGGTCCGGAAGTACGAACGCGAAGCCCGGGAAATGGGCAAGGCC
TCCTTTTACCTCGCATGGTTGATGGACGAGGATGGGGAGGAGCGGGTCCA
TGGGGTCACCATGGAGGTGGGCCAAAAAGTCATCGAGCTCCCACATCGTG
TTTTGACCCTTTTAGGTCCGTGAGGAGGGAGCGATGAGAGGGAGGGAGGG
AGGGAGGGAAGGGGGGGAGAGGGAGGGGGGAAAGTTTAATTCATATACCA
TTAATTTCCTTGTTTGAACACAATCCACACACATTAGACGCGCCGGGCCA
CGCGGATTTTATTCCCCAAATGATCATGGGTGCAGCACAAGCAGACGTAG
CCTTGCTGGTTGTCCCCGCGACCACGGGGGAGTTTGAAGCCGGGTTCACA
GAGGCCAGCAATGGGCGGGATGGTCTAGGGCAGGGACAGACGAAGGAACA
TGCTCTCTTGGCGCGGGCCCTTGGCGTGACTCAGTTGTTGGTCGCCATTA
ATAAGTTGGATGTAGCGGAGCCTCCCTGGTCACAGAGCCGGTACGAAGAT
ATAGTCGGCGCGTTGGGGCCGTTTCTGGAACAAACGGGGTTTAAGTCTGA
ACGGATTCGGTATGTCCCTGTGAGTGGCCTAACGGGCGAGAATGTCAAGG
AGGGAGGGAGGGATGGAGGGGGGCCGCTGGGGGGATGGTACACGGGACCC
TCGCTCTTGACGGCCATGGACGAATTCTTGCCCGCGACCAAGTCTTTGCG
CGAAGCCCGAAGCAAGCCGTTGCGGATGGTGGTAAACGATTATGTACCGG
CGGGGAAGAATATAGGGGTTTCCGTGCGGGTGCTCTCGGGAGGGGTGAAG
GCTGGGAGTAAGGTTCTGATTTTGCCGATTGGGGATGTAGCGACGGTGCG
CGCGATTGAAGTGGAAGGCCGTGGGGCTGAGACCGCTCAGGCCGGGGAGC
ACGCCGAACTGATGCTGCAAGGCGTGGATATTGCGCGTATGTCGATAGGG
AGTGTGTTGTGTAAAGGGAAGGCGGCCGTGCCTGTCTCTCGGCGATTCGG
CGCGCAGATAACGACCTTGCCGTCATTAGGGACCCCAATACTAAGGGGTA
CTCAGTTTCAATTGCATTTGCAGAGTCTGGAGATGCCTGTGAATACCACG
CGGCTGATCGCGACATTGCACAAGCCCTTGTCGGAAGAGGGGATGGCCTC
GGCGGAGATAAAGCAGGAGCGACCGCGGTGTCTGACTGGGGGTTTATTGG
CACTGGTGGAATTAAGGTGTCAGCGGCCCATGTGTGTGGAGCGGTACGAC
GAGTCGCGCTCGCTGGGTCGGTTTATTTTGCGACAGAAGGGCGAGACGGT
AGCCGTAGGTATGGTCACAGAGATTCTCCCGGACACATGATAACAGTCGT
TCTACACGGTCCGGAAAGGTTGGAAAAAATGGGAAAAAGTAGGCTTAGGG
TTTCGATCGCG back to topCoding sequence (CDS) from alignment at scaffold_30:174067..176177- >mRNA_9004 ID=mRNA_9004|Name=jgi.p|Nanoce1779_2|604848|organism=Nannochloropsis oceanica|type=CDS|length=3702bp|location=Sequence derived from alignment at scaffold_30:174067..176177- (Nannochloropsis oceanica)
ACGCGCCGGGCCACGCGGATTTTATTCCCCAAATGATCATGGGTGCAGCA
CAAGCAGACGTAGCCTTGCTGGTTGTCCCCGCGACCACGGGGGAGTTTGA
AGCCGGGTTCACAGAGGCCAGCAATGGGCGGGATGGTCTAGGGCAGGGAC
AGACGAAGGAACATGCTCTCTTGGCGCGGGCCCTTGGCGTGACTCAGTTG
TTGGTCGCCATTAATAAGTTGGATGTAGCGGAGCCTCCCTGGTCACAGAG
CCGGTACGAAGATATAGTCGGCGCGTTGGGGCCGTTTCTGGAACAAACGG
GGTTTAAGTCTGAACGGATTCGGTATGTCCCTGTGAGTGGCCTAACGGGC
GAGAATGTCAAGGAGGGAGGGAGGGATGGAGGGGGGCCGCTGGGGGGATG
GTACACGGGACCCTCGCTCTTGACGGCCATGGACGAATTCTTGCCCGCGA
CCAAGTCTTTGCGCGAAGCCCGAAGCAAGCCGTTGCGGATGGTGGTAAAC
GATTATGTACCGGCGGGGAAGAATATAGGGGTTTCCGTGCGGGTGCTCTC
GGGAGGGGTGAAGGCTGGGAGTAAGGTTCTGATTTTGCCGATTGGGGATG
TAGCGACGGTGCGCGCGATTGAAGTGGAAGGCCGTGGGGCTGAGACCGCT
CAGGCCGGGGAGCACGCCGAACTGATGCTGCAAGGCGTGGATATTGCGCG
TATGTCGATAGGGAGTGTGTTGTGTAAAGGGAAGGCGGCCGTGCCTGTCT
CTCGGCGATTCGGCGCGCAGATAACGACCTTGCCGTCATTAGGGACCCCA
ATACTAAGGGGTACTCAGTTTCAATTGCATTTGCAGAGTCTGGAGATGCC
TGTGAATACCACGCGGCTGATCGCGACATTGCACAAGCCCTTGTCGGAAG
AGGGGATGGCCTCGGCGGAGATAAAGCAGGAGCGACCGCGGTGTCTGACT
GGGGGTTTATTGGCACTGGTGGAATTAAGGTGTCAGCGGCCCATGTGTGT
GGAGCGGTACGACGAGTCGCGCTCGCTGGGTCGGTTTATTTTGCGACAGA
AGGGCGAGACGGTAGCCGTAGGTATGGTCACAGAGATTCTCCCGGACACA
TGAATGAACTCCCCCCCTCCCCCCCTCCCTCCCGGCCACCTCGTCCGTCC
CTCCCCGCAACGGCGCTCCAGCGCCGCCGGGCTTGCAATAAGCAGTAATA
ACAGTGTCAACAGCAGCGATAGGGGTGGCGATGGGAGCCGTGTTGGGAGC
CGGAACAACAGCAGCAATAATCTCTTGGAGGATGTGACGGGGAGGGTGGG
CGGGGTGAGTCTCGTCCGTTCACGCACCCCTCCTGCACGGGTTCGGAGTG
CCTCTCCCGGTCCTGGAGGGATGGATGATAATGGTTGTGAGGGTGTCCCC
ACGCCTGGGGATGTGGTGGCGTCGCGGGCGTCGCTTGGGGGGCTGTCGAG
AGACGCGGGCGTTTGGGAGGAGGACGTGCTCCCTTCCGCGGCGCCTGCGT
CCTCTCTCCCGCCCTCCGGTTCTTCAGGTGGCCTTGCCTTTGCTTCTGAG
GAGGATAGTGGGAAAGAAGGGGGGAAGGGAGGAGAGCTGGAAAAGCCACG
GATTACGATGGTAGTGATTGGGCATGTGGACGCGGGAAAGTCAACGTTAA
TGGGACAAGTCTTGGTTGCCACTGGCTTGGTCTCCTCGCGGGAGGTCCGG
AAGTACGAACGCGAAGCCCGGGAAATGGGCAAGGCCTCCTTTTACCTCGC
ATGGTTGATGGACGAGGATGGGGAGGAGCGGGTCCATGGGGTCACCATGG
AGGTGGGCCAAAAAGTCATCGAGCTCCCACATCGTGTTTTGACCCTTTTA
GACGCGCCGGGCCACGCGGATTTTATTCCCCAAATGATCATGGGTGCAGC
ACAAGCAGACGTAGCCTTGCTGGTTGTCCCCGCGACCACGGGGGAGTTTG
AAGCCGGGTTCACAGAGGCCAGCAATGGGCGGGATGGTCTAGGGCAGGGA
CAGACGAAGGAACATGCTCTCTTGGCGCGGGCCCTTGGCGTGACTCAGTT
GTTGGTCGCCATTAATAAGTTGGATGTAGCGGAGCCTCCCTGGTCACAGA
GCCGGTACGAAGATATAGTCGGCGCGTTGGGGCCGTTTCTGGAACAAACG
GGGTTTAAGTCTGAACGGATTCGGTATGTCCCTGTGAGTGGCCTAACGGG
CGAGAATGTCAAGGAGGGAGGGAGGGATGGAGGGGGGCCGCTGGGGGGAT
GGTACACGGGACCCTCGCTCTTGACGGCCATGGACGAATTCTTGCCCGCG
ACCAAGTCTTTGCGCGAAGCCCGAAGCAAGCCGTTGCGGATGGTGGTAAA
CGATTATGTACCGGCGGGGAAGAATATAGGGGTTTCCGTGCGGGTGCTCT
CGGGAGGGGTGAAGGCTGGGAGTAAGGTTCTGATTTTGCCGATTGGGGAT
GTAGCGACGGTGCGCGCGATTGAAGTGGAAGGCCGTGGGGCTGAGACCGC
TCAGGCCGGGGAGCACGCCGAACTGATGCTGCAAGGCGTGGATATTGCGC
GTATGTCGATAGGGAGTGTGTTGTGTAAAGGGAAGGCGGCCGTGCCTGTC
TCTCGGCGATTCGGCGCGCAGATAACGACCTTGCCGTCATTAGGGACCCC
AATACTAAGGGGTACTCAGTTTCAATTGCATTTGCAGAGTCTGGAGATGC
CTGTGAATACCACGCGGCTGATCGCGACATTGCACAAGCCCTTGTCGGAA
GAGGGGATGGCCTCGGCGGAGATAAAGCAGGAGCGACCGCGGTGTCTGAC
TGGGGGTTTATTGGCACTGGTGGAATTAAGGTGTCAGCGGCCCATGTGTG
TGGAGCGGTACGACGAGTCGCGCTCGCTGGGTCGGTTTATTTTGCGACAG
AAGGGCGAGACGGTAGCCGTAGGTATGGTCACAGAGATTCTCCCGGACAC
ATGAATGAACTCCCCCCCTCCCCCCCTCCCTCCCGGCCACCTCGTCCGTC
CCTCCCCGCAACGGCGCTCCAGCGCCGCCGGGCTTGCAATAAGCAGTAAT
AACAGTGTCAACAGCAGCGATAGGGGTGGCGATGGGAGCCGTGTTGGGAG
CCGGAACAACAGCAGCAATAATCTCTTGGAGGATGTGACGGGGAGGGTGG
GCGGGGTGAGTCTCGTCCGTTCACGCACCCCTCCTGCACGGGTTCGGAGT
GCCTCTCCCGGTCCTGGAGGGATGGATGATAATGGTTGTGAGGGTGTCCC
CACGCCTGGGGATGTGGTGGCGTCGCGGGCGTCGCTTGGGGGGCTGTCGA
GAGACGCGGGCGTTTGGGAGGAGGACGTGCTCCCTTCCGCGGCGCCTGCG
TCCTCTCTCCCGCCCTCCGGTTCTTCAGGTGGCCTTGCCTTTGCTTCTGA
GGAGGATAGTGGGAAAGAAGGGGGGAAGGGAGGAGAGCTGGAAAAGCCAC
GGATTACGATGGTAGTGATTGGGCATGTGGACGCGGGAAAGTCAACGTTA
ATGGGACAAGTCTTGGTTGCCACTGGCTTGGTCTCCTCGCGGGAGGTCCG
GAAGTACGAACGCGAAGCCCGGGAAATGGGCAAGGCCTCCTTTTACCTCG
CATGGTTGATGGACGAGGATGGGGAGGAGCGGGTCCATGGGGTCACCATG
GAGGTGGGCCAAAAAGTCATCGAGCTCCCACATCGTGTTTTGACCCTTTT
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