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Properties
| Property Name | Value |
|---|
| TranscriptId | 249335 |
| Track | FilteredModels2 |
| ProteinId | 249249 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_30 | supercontig | scaffold_30:145454..147678 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9000 ID=mRNA_9000|Name=jgi.p|Nanoce1779_2|249249|organism=Nannochloropsis oceanica|type=mRNA|length=1222bp
AGGGGGGAAAGAAGGGAGGGGTGACAGGAGGAGCGTCCATCGTTGGGGCA
GCGGCGGCGATCGTACGAGGAAGAGGACGAGGAGTTCGATTACATAGGCC
TTGTGCCGGGGGAGCAGAGGGTGGTGATGAAAGTCCCCGCCATCACGCTG
GAAGGGTCAACCCTGAGGTTATCCAAGGCGCTCCTCCGACGCGTCTCGTC
CTTCCAGCTCCATTCCAACCTCATCGACACGCGCCTCTACCTCCTTGCAC
ACTGGGTACTTGAGCTCATCGAGAACAAGGAAGACTTCACCAGCCTGGAA
GAAGACGTCCTTCCCTTCATTGTACGCCAGCAATTCAAAGGCCCAGAAGC
CTTTGGCAGCGCCGTCTCCGTCCCTGTGGGCAACACGGAGGTGGAGGCCA
CAATTGCCGCCCTTTCCGCTGGCTCAGTCTACGCACGTCCTGATGACGGT
CCTCGGTGTTTCGCCTACATTCTCGACCCTTCTACAGAGAGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGGGCATGTACTGCTCGAAGCTGACGTCCACTA
CGGCCTACATGCTGATGAATCGGGAGCTCATGACCCTCTCCAGGGAGGTG
GCGGCCTGGGATCCCCCGGAAGGATACCGGCCCAAGGAAACATGCGTGGT
CGGAGAGGGGTGTGCGTTTGGCGAGCAGGTCAACATCAAGGCCTCGGTCT
TGGGCGCCAATTGCAAGATCGGCACGCGCGTTAAGATTCACCAGTGCGTA
CTCATGGACAATGTGACCGTGTCCGACGGCGTTACTCTTACTAATACTGT
GGTCTGTCCCCATGCCCGGATCCAGGTACGCGCTCCCCCCCCCCCTCCCC
CTCTTCCTCTTTTCCTCGACCCTGTCCTCTGTATATCAAATAATATGTCC
CGTCTTCATTTGAGGGATAGCTGCACACTTTCTGAATGCCGCGTTCTTAT
CGTCTCTGAGCCCCTGTCATCCTTCCCTATCGCCTTCCCTCCCTCCAAGG
AATTTTGCTCGCTCCAAGACTCCTTCGTAGGCTCGTATATGACTGTGCCA
GCCAAGACCAAACTTAAGAATGGTGAGCTGATGAGAGAATGAGGAACAGG
AATCATTGGAAAAGGAGATAGAAGAAAAGAGGGAAGAACGAATTATAAGT
CAAAGCGTTGTCGAATCGCATGAACGAGAGGAGAATTACCATAACTGTCC
AGGCAACTCAAAGCGGACAGCG back to topprotein sequence of jgi.p|Nanoce1779_2|249249 >mRNA_9000-protein ID=mRNA_9000-protein|Name=jgi.p|Nanoce1779_2|249249|organism=Nannochloropsis oceanica|type=polypeptide|length=322bp
MKVPAITLEGSTLRLSKALLRRVSSFQLHSNLIDTRLYLLAHWVLELIEN
KEDFTSLEEDVLPFIVRQQFKGPEAFGSAVSVPVGNTEVEATIAALSAGS
VYARPDDGPRCFAYILDPSTERGREGGREGGGMYCSKLTSTTAYMLMNRE
LMTLSREVAAWDPPEGYRPKETCVVGEGCAFGEQVNIKASVLGANCKIGT
RVKIHQCVLMDNVTVSDGVTLTNTVVCPHARIQVRAPPPPPPLPLFLDPV
LCISNNMSRLHLRDSCTLSECRVLIVSEPLSSFPIAFPPSKEFCSLQDSF
VGSYMTVPAKTKLKNGELMRE* back to topmRNA from alignment at scaffold_30:145454..147678+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9000 ID=mRNA_9000|Name=jgi.p|Nanoce1779_2|249249|organism=Nannochloropsis oceanica|type=mRNA|length=2225bp|location=Sequence derived from alignment at scaffold_30:145454..147678+ (Nannochloropsis oceanica)
AGGGGGGAAAGAAGGGAGGGGTGACAGGAGGAGCGTCCATCGTTGGGGCA
GCGGCGGCGATCGTACGTAGGCAGGGAGGGAGGGAAGGAGGGAGGGTGGG
AGGGGTAGTAGCGATATGTCAGGGGACCATGCTGACAAGCTCCCCTCGCC
CCTTCCCCCCTCCCCCCCTCCCCCCCTCCCTCCCTCCCTCCCTTCCTCCC
TCCCTCCCTCCCTTCCTGTGCCAGGAGGAAGAGGACGAGGAGTTCGATTA
CATAGGCCTTGTGCCGGGGGAGCAGAGGGTGGTGATGAAAGTCCCCGCCA
TCACGCTGGAAGGGTCAACCCTGAGGTTATCCAAGGTGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGATCAATTCTTCCCCC
TTTTTCCTACCCCTCACACGTCGACTGATCTCCCCCTCCCTCCCTCGCTT
CCCCCCTCTCTCTCTTCCTCCTTCCTTTAGGCGCTCCTCCGACGCGTCTC
GTCCTTCCAGCTCCATTCCAACCTCATCGACACGCGCCTCTACCTCCTTG
CACACTGGGTACTTGAGCTCATCGAGAACAAGGAAGACTTCACCAGGTCC
ATCTCTCTGCCCCCTCCCTCCTCCCCGCCCTACTTCCCTCCCTCTCCACT
CTAATGTCCGTCAGCGATTCCAAGGCTGTGATGCCTTTCATATGACCAAC
CCCCCTCCCTCCCTCCCTCCCTCCCTCCCTACCTCCTTCCCTCCCTTCTC
GCCCCCAGCCTGGAAGAAGACGTCCTTCCCTTCATTGTACGCCAGCAATT
CAAAGGCCCAGAAGCCTTTGGCAGCGCCGTCTCCGTCCCTGTGGGCAACA
CGGAGGTGGAGGTGAGAGGGCGGGTGGAAGGGAGGGAGGGAAGGAGGGAA
GGAGGGACGGAAGGCTCATGTATGCAGCCATTCACCCTATACTATCTCTC
TCTGTCCCTCCCGCCCTCTCACCCTCCCTCCCCCCATTCTATAGGCCACA
ATTGCCGCCCTTTCCGCTGGCTCAGTCTACGCACGTCCTGATGACGGTCC
TCGGTGTTTCGCCTACATTCTCGACCCTTCTACAGAGAGAGGGAGGGAGG
GAGGGAGGGAGGGAGGGGGCATGTACTGCTCGAAGCTGACGTCCACTACG
GCCTACATGCTGATGAATCGGGAGGTGAGGGAGGGAGGGAGGGACGAAGG
GAGCAAGGAAGACGATGGGTGTCTATGGACACCAAAATTCTGACGTCGGT
GTCAAATTTTAACCTCTTAGAATTATGTATGCTTACCCCTCCCTCCCTCC
TTCCCTCCCTCTCTCACTGCCATCTCCTAGCTCATGACCCTCTCCAGGGA
GGTGGCGGCCTGGGATCCCCCGGAAGGATACCGGCCCAAGGAAACATGCG
TGGTCGGAGAGGGGTGTGCGTTTGGCGAGCAGGTAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGAGGGCACTTCAGTTTT
ACGATGGCGATGATACGTATTTGTGCTCGCCCTTCGTCTCTTTCTCCCTT
CCTCCCTACAGATTTATATCAAGGCCACTTATACAGACAACAACCGCCAT
TTCGGCGCTAGATCTCACATACATGATTTTCTCCGTCCCTCCCTCCCTCC
CTCCTCCCTCCTCCCTCCTCCCTTCCCCTAGGTCAACATCAAGGCCTCGG
TCTTGGGCGCCAATTGCAAGATCGGCACGCGCGTTAAGATTCACCAGTGC
GTACTCATGGACAATGTGACCGTGTCCGACGGCGTTACTCTTACTAATAC
TGTGGTCTGTCCCCATGCCCGGATCCAGGTACGCGCTCCCCCCCCCCCTC
CCCCTCTTCCTCTTTTCCTCGACCCTGTCCTCTGTATATCAAATAATATG
TCCCGTCTTCATTTGAGGGATAGCTGCACACTTTCTGAATGCCGCGTTCT
TATCGTCTCTGAGCCCCTGTCATCCTTCCCTATCGCCTTCCCTCCCTCCA
AGGAATTTTGCTCGCTCCAAGACTCCTTCGTAGGCTCGTATATGACTGTG
CCAGCCAAGACCAAACTTAAGAATGGTGAGCTGATGAGAGAATGAGGAAC
AGGAATCATTGGAAAAGGAGATAGAAGAAAAGAGGGAAGAACGAATTATA
AGTCAAAGCGTTGTCGAATCGCATGAACGAGAGGAGAATTACCATAACTG
TCCAGGCAACTCAAAGCGGACAGCG back to topCoding sequence (CDS) from alignment at scaffold_30:145454..147678+ >mRNA_9000 ID=mRNA_9000|Name=jgi.p|Nanoce1779_2|249249|organism=Nannochloropsis oceanica|type=CDS|length=5796bp|location=Sequence derived from alignment at scaffold_30:145454..147678+ (Nannochloropsis oceanica)
ATGAAAGTCCCCGCCATCACGCTGGAAGGGTCAACCCTGAGGTTATCCAA
GGCGCTCCTCCGACGCGTCTCGTCCTTCCAGCTCCATTCCAACCTCATCG
ACACGCGCCTCTACCTCCTTGCACACTGGGTACTTGAGCTCATCGAGAAC
AAGGAAGACTTCACCAGCCTGGAAGAAGACGTCCTTCCCTTCATTGTACG
CCAGCAATTCAAAGGCCCAGAAGCCTTTGGCAGCGCCGTCTCCGTCCCTG
TGGGCAACACGGAGGTGGAGGCCACAATTGCCGCCCTTTCCGCTGGCTCA
GTCTACGCACGTCCTGATGACGGTCCTCGGTGTTTCGCCTACATTCTCGA
CCCTTCTACAGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGCATGT
ACTGCTCGAAGCTGACGTCCACTACGGCCTACATGCTGATGAATCGGGAG
CTCATGACCCTCTCCAGGGAGGTGGCGGCCTGGGATCCCCCGGAAGGATA
CCGGCCCAAGGAAACATGCGTGGTCGGAGAGGGGTGTGCGTTTGGCGAGC
AGGTCAACATCAAGGCCTCGGTCTTGGGCGCCAATTGCAAGATCGGCACG
CGCGTTAAGATTCACCAGTGCGTACTCATGGACAATGTGACCGTGTCCGA
CGGCGTTACTCTTACTAATACTGTGGTCTGTCCCCATGCCCGGATCCAGG
TACGCGCTCCCCCCCCCCCTCCCCCTCTTCCTCTTTTCCTCGACCCTGTC
CTCTGTATATCAAATAATATGTCCCGTCTTCATTTGAGGGATAGCTGCAC
ACTTTCTGAATGCCGCGTTCTTATCGTCTCTGAGCCCCTGTCATCCTTCC
CTATCGCCTTCCCTCCCTCCAAGGAATTTTGCTCGCTCCAAGACTCCTTC
GTAGGCTCGTATATGACTGTGCCAGCCAAGACCAAACTTAAGAATGGTGA
GCTGATGAGAGAATGAATGAAAGTCCCCGCCATCACGCTGGAAGGGTCAA
CCCTGAGGTTATCCAAGGCGCTCCTCCGACGCGTCTCGTCCTTCCAGCTC
CATTCCAACCTCATCGACACGCGCCTCTACCTCCTTGCACACTGGGTACT
TGAGCTCATCGAGAACAAGGAAGACTTCACCAGCCTGGAAGAAGACGTCC
TTCCCTTCATTGTACGCCAGCAATTCAAAGGCCCAGAAGCCTTTGGCAGC
GCCGTCTCCGTCCCTGTGGGCAACACGGAGGTGGAGGCCACAATTGCCGC
CCTTTCCGCTGGCTCAGTCTACGCACGTCCTGATGACGGTCCTCGGTGTT
TCGCCTACATTCTCGACCCTTCTACAGAGAGAGGGAGGGAGGGAGGGAGG
GAGGGAGGGGGCATGTACTGCTCGAAGCTGACGTCCACTACGGCCTACAT
GCTGATGAATCGGGAGCTCATGACCCTCTCCAGGGAGGTGGCGGCCTGGG
ATCCCCCGGAAGGATACCGGCCCAAGGAAACATGCGTGGTCGGAGAGGGG
TGTGCGTTTGGCGAGCAGGTCAACATCAAGGCCTCGGTCTTGGGCGCCAA
TTGCAAGATCGGCACGCGCGTTAAGATTCACCAGTGCGTACTCATGGACA
ATGTGACCGTGTCCGACGGCGTTACTCTTACTAATACTGTGGTCTGTCCC
CATGCCCGGATCCAGGTACGCGCTCCCCCCCCCCCTCCCCCTCTTCCTCT
TTTCCTCGACCCTGTCCTCTGTATATCAAATAATATGTCCCGTCTTCATT
TGAGGGATAGCTGCACACTTTCTGAATGCCGCGTTCTTATCGTCTCTGAG
CCCCTGTCATCCTTCCCTATCGCCTTCCCTCCCTCCAAGGAATTTTGCTC
GCTCCAAGACTCCTTCGTAGGCTCGTATATGACTGTGCCAGCCAAGACCA
AACTTAAGAATGGTGAGCTGATGAGAGAATGAATGAAAGTCCCCGCCATC
ACGCTGGAAGGGTCAACCCTGAGGTTATCCAAGGCGCTCCTCCGACGCGT
CTCGTCCTTCCAGCTCCATTCCAACCTCATCGACACGCGCCTCTACCTCC
TTGCACACTGGGTACTTGAGCTCATCGAGAACAAGGAAGACTTCACCAGC
CTGGAAGAAGACGTCCTTCCCTTCATTGTACGCCAGCAATTCAAAGGCCC
AGAAGCCTTTGGCAGCGCCGTCTCCGTCCCTGTGGGCAACACGGAGGTGG
AGGCCACAATTGCCGCCCTTTCCGCTGGCTCAGTCTACGCACGTCCTGAT
GACGGTCCTCGGTGTTTCGCCTACATTCTCGACCCTTCTACAGAGAGAGG
GAGGGAGGGAGGGAGGGAGGGAGGGGGCATGTACTGCTCGAAGCTGACGT
CCACTACGGCCTACATGCTGATGAATCGGGAGCTCATGACCCTCTCCAGG
GAGGTGGCGGCCTGGGATCCCCCGGAAGGATACCGGCCCAAGGAAACATG
CGTGGTCGGAGAGGGGTGTGCGTTTGGCGAGCAGGTCAACATCAAGGCCT
CGGTCTTGGGCGCCAATTGCAAGATCGGCACGCGCGTTAAGATTCACCAG
TGCGTACTCATGGACAATGTGACCGTGTCCGACGGCGTTACTCTTACTAA
TACTGTGGTCTGTCCCCATGCCCGGATCCAGGTACGCGCTCCCCCCCCCC
CTCCCCCTCTTCCTCTTTTCCTCGACCCTGTCCTCTGTATATCAAATAAT
ATGTCCCGTCTTCATTTGAGGGATAGCTGCACACTTTCTGAATGCCGCGT
TCTTATCGTCTCTGAGCCCCTGTCATCCTTCCCTATCGCCTTCCCTCCCT
CCAAGGAATTTTGCTCGCTCCAAGACTCCTTCGTAGGCTCGTATATGACT
GTGCCAGCCAAGACCAAACTTAAGAATGGTGAGCTGATGAGAGAATGAAT
GAAAGTCCCCGCCATCACGCTGGAAGGGTCAACCCTGAGGTTATCCAAGG
CGCTCCTCCGACGCGTCTCGTCCTTCCAGCTCCATTCCAACCTCATCGAC
ACGCGCCTCTACCTCCTTGCACACTGGGTACTTGAGCTCATCGAGAACAA
GGAAGACTTCACCAGCCTGGAAGAAGACGTCCTTCCCTTCATTGTACGCC
AGCAATTCAAAGGCCCAGAAGCCTTTGGCAGCGCCGTCTCCGTCCCTGTG
GGCAACACGGAGGTGGAGGCCACAATTGCCGCCCTTTCCGCTGGCTCAGT
CTACGCACGTCCTGATGACGGTCCTCGGTGTTTCGCCTACATTCTCGACC
CTTCTACAGAGAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGCATGTAC
TGCTCGAAGCTGACGTCCACTACGGCCTACATGCTGATGAATCGGGAGCT
CATGACCCTCTCCAGGGAGGTGGCGGCCTGGGATCCCCCGGAAGGATACC
GGCCCAAGGAAACATGCGTGGTCGGAGAGGGGTGTGCGTTTGGCGAGCAG
GTCAACATCAAGGCCTCGGTCTTGGGCGCCAATTGCAAGATCGGCACGCG
CGTTAAGATTCACCAGTGCGTACTCATGGACAATGTGACCGTGTCCGACG
GCGTTACTCTTACTAATACTGTGGTCTGTCCCCATGCCCGGATCCAGGTA
CGCGCTCCCCCCCCCCCTCCCCCTCTTCCTCTTTTCCTCGACCCTGTCCT
CTGTATATCAAATAATATGTCCCGTCTTCATTTGAGGGATAGCTGCACAC
TTTCTGAATGCCGCGTTCTTATCGTCTCTGAGCCCCTGTCATCCTTCCCT
ATCGCCTTCCCTCCCTCCAAGGAATTTTGCTCGCTCCAAGACTCCTTCGT
AGGCTCGTATATGACTGTGCCAGCCAAGACCAAACTTAAGAATGGTGAGC
TGATGAGAGAATGAATGAAAGTCCCCGCCATCACGCTGGAAGGGTCAACC
CTGAGGTTATCCAAGGCGCTCCTCCGACGCGTCTCGTCCTTCCAGCTCCA
TTCCAACCTCATCGACACGCGCCTCTACCTCCTTGCACACTGGGTACTTG
AGCTCATCGAGAACAAGGAAGACTTCACCAGCCTGGAAGAAGACGTCCTT
CCCTTCATTGTACGCCAGCAATTCAAAGGCCCAGAAGCCTTTGGCAGCGC
CGTCTCCGTCCCTGTGGGCAACACGGAGGTGGAGGCCACAATTGCCGCCC
TTTCCGCTGGCTCAGTCTACGCACGTCCTGATGACGGTCCTCGGTGTTTC
GCCTACATTCTCGACCCTTCTACAGAGAGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGGGCATGTACTGCTCGAAGCTGACGTCCACTACGGCCTACATGC
TGATGAATCGGGAGCTCATGACCCTCTCCAGGGAGGTGGCGGCCTGGGAT
CCCCCGGAAGGATACCGGCCCAAGGAAACATGCGTGGTCGGAGAGGGGTG
TGCGTTTGGCGAGCAGGTCAACATCAAGGCCTCGGTCTTGGGCGCCAATT
GCAAGATCGGCACGCGCGTTAAGATTCACCAGTGCGTACTCATGGACAAT
GTGACCGTGTCCGACGGCGTTACTCTTACTAATACTGTGGTCTGTCCCCA
TGCCCGGATCCAGGTACGCGCTCCCCCCCCCCCTCCCCCTCTTCCTCTTT
TCCTCGACCCTGTCCTCTGTATATCAAATAATATGTCCCGTCTTCATTTG
AGGGATAGCTGCACACTTTCTGAATGCCGCGTTCTTATCGTCTCTGAGCC
CCTGTCATCCTTCCCTATCGCCTTCCCTCCCTCCAAGGAATTTTGCTCGC
TCCAAGACTCCTTCGTAGGCTCGTATATGACTGTGCCAGCCAAGACCAAA
CTTAAGAATGGTGAGCTGATGAGAGAATGAATGAAAGTCCCCGCCATCAC
GCTGGAAGGGTCAACCCTGAGGTTATCCAAGGCGCTCCTCCGACGCGTCT
CGTCCTTCCAGCTCCATTCCAACCTCATCGACACGCGCCTCTACCTCCTT
GCACACTGGGTACTTGAGCTCATCGAGAACAAGGAAGACTTCACCAGCCT
GGAAGAAGACGTCCTTCCCTTCATTGTACGCCAGCAATTCAAAGGCCCAG
AAGCCTTTGGCAGCGCCGTCTCCGTCCCTGTGGGCAACACGGAGGTGGAG
GCCACAATTGCCGCCCTTTCCGCTGGCTCAGTCTACGCACGTCCTGATGA
CGGTCCTCGGTGTTTCGCCTACATTCTCGACCCTTCTACAGAGAGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGGGCATGTACTGCTCGAAGCTGACGTCC
ACTACGGCCTACATGCTGATGAATCGGGAGCTCATGACCCTCTCCAGGGA
GGTGGCGGCCTGGGATCCCCCGGAAGGATACCGGCCCAAGGAAACATGCG
TGGTCGGAGAGGGGTGTGCGTTTGGCGAGCAGGTCAACATCAAGGCCTCG
GTCTTGGGCGCCAATTGCAAGATCGGCACGCGCGTTAAGATTCACCAGTG
CGTACTCATGGACAATGTGACCGTGTCCGACGGCGTTACTCTTACTAATA
CTGTGGTCTGTCCCCATGCCCGGATCCAGGTACGCGCTCCCCCCCCCCCT
CCCCCTCTTCCTCTTTTCCTCGACCCTGTCCTCTGTATATCAAATAATAT
GTCCCGTCTTCATTTGAGGGATAGCTGCACACTTTCTGAATGCCGCGTTC
TTATCGTCTCTGAGCCCCTGTCATCCTTCCCTATCGCCTTCCCTCCCTCC
AAGGAATTTTGCTCGCTCCAAGACTCCTTCGTAGGCTCGTATATGACTGT
GCCAGCCAAGACCAAACTTAAGAATGGTGAGCTGATGAGAGAATGA back to top
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