jgi.p|Nanoce1779_2|633257, mRNA_8999 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633257
Unique NamemRNA_8999
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1406
Alignment locationscaffold_30:140619..143329 -

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Properties
Property NameValue
TranscriptId633343
TrackFilteredModels2
ProteinId633257
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:140619..143329 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633257gene_8999Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633257mRNA_8999-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8999CDS_8999Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8999 ID=mRNA_8999|Name=jgi.p|Nanoce1779_2|633257|organism=Nannochloropsis oceanica|type=mRNA|length=1406bp
ATGCAGCTCCTGCTTTCCCAGCTCTCTTCCGCCTCCACCGGCGTCTCCCT
CACAGCTCAAACCAAAACAAAAGACGGGAGAGAAGGCACCGAAAAGAAGA
ATAGTAAAAAGAAAATGAAGAATAAGAAGTCCCAGACCAACGCAAAGAGA
CGTACAGCACGACGAGGGGGGGGAGAATCAAAGGAGGAGGAGGAGGAGGA
GGGAGAAATTCACCGTGAGATAGAGAGGATGATGATGGATGTACAGTGGG
AGGAGGGGAACGAGGGAGAAAGAGAGGGAGGGGAGGAGAAGAAGGAGGAG
GAGTTAGATCTCCTTTTAGCGCCGGGAAGAGAGGAGAAGGAAGGGGAGGA
GGGAGCGGCGATGCTGCACAGGAAGGTGACTTCCATTCTGGCGCTGTTGC
AGGGGAGGAAGGAGGAGAATGATCGGTTGGAAAATGACGTGGCCGCGGTG
GCCCGCGCATACCTGGCCATGGGCAAGAAGAACGAGCTACTGCGCCTTCG
GACAGATTCATTCCACGAGGAGAGGCGGAAAAGGGAGGGCTTGAGGGAGA
GGCTGGTGAGCATTAACAGGCTTTTGGCGCAGCGGATCAAGGTAAGGAAG
AGGGAGGGAGGGAGAGAGGAAGAGGGGGAGGGAGGGCTTTCGACACTTAC
TTCACCTCTACACAATGCCAACTCAACAACAACAATGACGACATGTAGGA
ATTTCAAGAGACGCATCCGTCCTTCTCCTCCCCCCCCTCTTCTTCCTCCT
CTTCTTCCTCTTCCTCCTCCTGTCCTGTTCGCCCATCAGACAGCGACGGG
CAGAGCCCGCCCGAGGAAGGAGGGAAGGAGGGAGGGAAGGAGGGAGGGGG
CGGCGATACTGACGTGGCAACGATGCGTGCCACATTCTTGAAGAGCGTCC
AACACCTGAAGGAGAGGGTGCAGGAGGAGGAGAGGCAGTTGGCCCGTATT
ACCAGCATGCGGGTCCAAGTGGAGCAGTCTCTCAAAGACAAAGCCGCCTA
TGACAGCTCCAATCGGACATTGTTCTCTGAGCTCTCCTCGTACCACGACC
GTTACGTCCAGATCATCTCTTCCCTCCATGCATCTACAACTGACATGGCC
ACCAAAACCGCATCTTCCTCGGACTCCCTTGCCTCCCTTCGCTCCCTTCT
TCCCTCCCTCCTGGCATCCAACGTTAAGTTGGAGAAGGAAGCGCGGCGCT
TGCAGTCGGCAAGAGGGGAGAAAATCAGGCTGTTGCAACAGTTGGAAGAG
AGGGGGAAGGATGGAGGGAGGGACGAAGCGGTAGCGAAAGAGGAGGAGGG
TTGAGACAAGAAGGAAGTTTGTACAAAGTAGAAGGGATATAAAGCAGCAA
CAAAAGCGTCATGATAGAAACAATAGGAAGATTAATAAAATAAGGTATAA
ATAAAT
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protein sequence of jgi.p|Nanoce1779_2|633257

>mRNA_8999-protein ID=mRNA_8999-protein|Name=jgi.p|Nanoce1779_2|633257|organism=Nannochloropsis oceanica|type=polypeptide|length=297bp
MQLLLSQLSSASTGVSLTAQTKTKDGREGTEKKNSKKKMKNKKSQTNAKR
RTARRGGGESKEEEEEEGEIHREIERMMMDVQWEEGNEGEREGGEEKKEE
ELDLLLAPGREEKEGEEGAAMLHRKVTSILALLQGRKEENDRLENDVAAV
ARAYLAMGKKNELLRLRTDSFHEERRKREGLRERLVSINRLLAQRIKVRK
REGGREEEGEGGLSTLTSPLHNANSTTTMTTCRNFKRRIRPSPPPPLLPP
LLPLPPPVLFAHQTATGRARPRKEGRREGRREGAAILTWQRCVPHS*
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mRNA from alignment at scaffold_30:140619..143329-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8999 ID=mRNA_8999|Name=jgi.p|Nanoce1779_2|633257|organism=Nannochloropsis oceanica|type=mRNA|length=2711bp|location=Sequence derived from alignment at scaffold_30:140619..143329- (Nannochloropsis oceanica)
ATGCAGCTCCTGCTTTCCCAGCTCTCTTCCGCCTCCACCGGCGTCTCCCT
CACAGCTCAAACCAAAACAAAAGACGGGAGAGAAGGCACCGAAAAGAAGA
ATAGTAAAAAGAAAATGAAGAATAAGAAGTCCCAGACCAACGCAAAGAGA
CGTACAGCACGACGAGGGGGGGGAGAATCAAAGGAGGAGGAGGAGGAGGA
GGGAGAAATTCACCGTGAGATAGAGAGGATGATGATGGATGTACAGTGGG
AGGAGGGGAACGAGGGAGAAAGAGAGGGAGGGGAGGAGAAGAAGGAGGAG
GAGTTAGATCTCCTTTTAGCGCCGGGAAGAGAGGAGAAGGAAGGGGAGGA
GGGAGCGGCGATGCTGCACAGGAAGGTGACTTCCATTCTGGCGCTGTTGC
AGGGGAGGAAGGAGGAGAATGATCGGTACGTGGATTAGGGGCAAGCCCTC
CCTCCCTCTTTATTTGTCTGTCCTAACTCCTCTTGACGTTGTACGACACG
TTCCCTACCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCAGGTTGGAAAATGACGTGGCCGCGG
TGGCCCGCGCATACCTGGCCATGGGCAAGAAGAACGAGCTACTGCGCCTT
CGGACAGATTCATTCCACGAGGAGAGGCGGAAAAGGGAGGGCTTGAGGGA
GAGGCTGGTGAGCATTAACAGGCTTTTGGCGCAGCGGATCAAGGTAAGGA
AGAGGGAGGGAGGGAGAGAGGAAGAGGGGGAGGGAGGGCTTTCGACACTT
ACTTCACCTCTACACAATGCCAACTCAACAACAACAATGACGACATGTAG
GAATTTCAAGAGACGCATCCGTCCTTCTCCTCCCCCCCCTCTTCTTCCTC
CTCTTCTTCCTCTTCCTCCTCCTGTCCTGTTCGCCCATCAGACAGCGACG
GGCAGAGCCCGCCCGAGGAAGGAGGGAAGGAGGGAGGGAAGGAGGGAGGG
GGCGGCGATACTGACGTGGCAACGATGCGTGCCACATTCTTGAAGAGCGT
CCAACACCTGAAGGAGAGGGTGCAGGAGGAGGAGAGGCAGGTAGGGAGGG
AGGGAAGGAGGGAGGATAAGTCGATTTAATACGTGTCTAATGGATCCCTT
CCTGAGCGTTTTCCCTCCCTCCCTCCTTCCCTCCCTTCCTCCCCCTTTCC
CTGGATTATCACCTGTTCACTCCTCCTTCTCTCCCTCCCGCCCTCCCTCC
CTAGAACCAGTGTGTGGCCGACGAGATTCAACGGCTCGAAGGTCACCGTG
AACAGATCGCCCTGTACAAGGAAGGGAGGGATGCGACCGAGGTAATGGCG
GGAGGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGAAGAACGAAAATGGGC
AGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAG
GGAGGGAGGAAGATAAGGATGAAGGGAGGGGTTCTGATCCATTTATAATT
CACCCACCCACCCACTCACAGAGATTGCTCGAGTCGAAGAGGAAAGCCGC
TATGGCGACGATGCAGCAAACGTCAGTCCCTCCCTCCCTCCCTCCCTCAG
CTTTTGCATTTTTTCTCCCTTTCGCCTCCTCCCTTTTCTTGCCCGCTATC
TCCTTCCCCCTTCCCGTAAGTCCCTTCCAATCTCCTCATTTCCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCCTTCCCCCATCCCTCCCTCCCTGC
AGCCTGGCAAGCAAGCAGCACCAGCTCCAGTTGCATCTTAAATATTTTCA
ATCGATCCTTCAGGCCGAAGAGATCAAGAAAAATGAGTGTGAAAAAATGG
AAAAAGAAGTAGGTCGGGGGGGAGAGGGATTAGTAGGCGGTAGAAGAGGG
GCGTGGTGGACTGCGAAAGTGGAAGGAGGAAGGGAAAGAGGGAGGGATGC
AAGGAAGGATGGGAAGAAGGAGGGAAAGAGGAAAGGAGGGCGGGAAAATG
GGAGGGTGCCAGCCAACGCGTGAAGCCATCCACACACCTACCGTCAATTA
ACCTCCCCTCCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCTCTCAGTTGGCCCGTATTACCAGCATGCGGGTCCAAGTGGAGCAGTC
TCTCAAAGACAAAGCCGCCTATGACAGCTCCAATCGGGTACTCCTTCCCT
CCCTCCCTCCCTCCATCCATCGCCATCTTCCTCCCTCTTCCACTGTATGC
CCTCCCTCCCTCTGTCCCTCCCTGTACGCCATTTCTTCACCCCTCACCCC
TCCTTCCTTCCCTCCCTCTAGACATTGTTCTCTGAGCTCTCCTCGTACCA
CGACCGTTACGTCCAGATCATCTCTTCCCTCCATGCATCTACAACTGACA
TGGCCACCAAAACCGCATCTTCCTCGGACTCCCTTGCCTCCCTTCGCTCC
CTTCTTCCCTCCCTCCTGGCATCCAACGTTAAGTTGGAGAAGGAAGCGCG
GCGCTTGCAGTCGGCAAGAGGGGAGAAAATCAGGCTGTTGCAACAGTTGG
AAGAGAGGGGGAAGGATGGAGGGAGGGACGAAGCGGTAGCGAAAGAGGAG
GAGGGTTGAGACAAGAAGGAAGTTTGTACAAAGTAGAAGGGATATAAAGC
AGCAACAAAAGCGTCATGATAGAAACAATAGGAAGATTAATAAAATAAGG
TATAAATAAAT
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Coding sequence (CDS) from alignment at scaffold_30:140619..143329-

>mRNA_8999 ID=mRNA_8999|Name=jgi.p|Nanoce1779_2|633257|organism=Nannochloropsis oceanica|type=CDS|length=1782bp|location=Sequence derived from alignment at scaffold_30:140619..143329- (Nannochloropsis oceanica)
GTTGGAAAATGACGTGGCCGCGGTGGCCCGCGCATACCTGGCCATGGGCA
AGAAGAACGAGCTACTGCGCCTTCGGACAGATTCATTCCACGAGGAGAGG
CGGAAAAGGGAGGGCTTGAGGGAGAGGCTGGTGAGCATTAACAGGCTTTT
GGCGCAGCGGATCAAGGTAAGGAAGAGGGAGGGAGGGAGAGAGGAAGAGG
GGGAGGGAGGGCTTTCGACACTTACTTCACCTCTACACAATGCCAACTCA
ACAACAACAATGACGACATGTAGGAATTTCAAGAGACGCATCCGTCCTTC
TCCTCCCCCCCCTCTTCTTCCTCCTCTTCTTCCTCTTCCTCCTCCTGTCC
TGTTCGCCCATCAGACAGCGACGGGCAGAGCCCGCCCGAGGAAGGAGGGA
AGGAGGGAGGGAAGGAGGGAGGGGGCGGCGATACTGACGTGGCAACGATG
CGTGCCACATTCTTGAATGCAGCTCCTGCTTTCCCAGCTCTCTTCCGCCT
CCACCGGCGTCTCCCTCACAGCTCAAACCAAAACAAAAGACGGGAGAGAA
GGCACCGAAAAGAAGAATAGTAAAAAGAAAATGAAGAATAAGAAGTCCCA
GACCAACGCAAAGAGACGTACAGCACGACGAGGGGGGGGAGAATCAAAGG
AGGAGGAGGAGGAGGAGGGAGAAATTCACCGTGAGATAGAGAGGATGATG
ATGGATGTACAGTGGGAGGAGGGGAACGAGGGAGAAAGAGAGGGAGGGGA
GGAGAAGAAGGAGGAGGAGTTAGATCTCCTTTTAGCGCCGGGAAGAGAGG
AGAAGGAAGGGGAGGAGGGAGCGGCGATGCTGCACAGGAAGGTGACTTCC
ATTCTGGCGCTGTTGCAGGGGAGGAAGGAGGAGAATGATCGGTTGGAAAA
TGACGTGGCCGCGGTGGCCCGCGCATACCTGGCCATGGGCAAGAAGAACG
AGCTACTGCGCCTTCGGACAGATTCATTCCACGAGGAGAGGCGGAAAAGG
GAGGGCTTGAGGGAGAGGCTGGTGAGCATTAACAGGCTTTTGGCGCAGCG
GATCAAGGTAAGGAAGAGGGAGGGAGGGAGAGAGGAAGAGGGGGAGGGAG
GGCTTTCGACACTTACTTCACCTCTACACAATGCCAACTCAACAACAACA
ATGACGACATGTAGGAATTTCAAGAGACGCATCCGTCCTTCTCCTCCCCC
CCCTCTTCTTCCTCCTCTTCTTCCTCTTCCTCCTCCTGTCCTGTTCGCCC
ATCAGACAGCGACGGGCAGAGCCCGCCCGAGGAAGGAGGGAAGGAGGGAG
GGAAGGAGGGAGGGGGCGGCGATACTGACGTGGCAACGATGCGTGCCACA
TTCTTGAATGCAGCTCCTGCTTTCCCAGCTCTCTTCCGCCTCCACCGGCG
TCTCCCTCACAGCTCAAACCAAAACAAAAGACGGGAGAGAAGGCACCGAA
AAGAAGAATAGTAAAAAGAAAATGAAGAATAAGAAGTCCCAGACCAACGC
AAAGAGACGTACAGCACGACGAGGGGGGGGAGAATCAAAGGAGGAGGAGG
AGGAGGAGGGAGAAATTCACCGTGAGATAGAGAGGATGATGATGGATGTA
CAGTGGGAGGAGGGGAACGAGGGAGAAAGAGAGGGAGGGGAGGAGAAGAA
GGAGGAGGAGTTAGATCTCCTTTTAGCGCCGGGAAGAGAGGAGAAGGAAG
GGGAGGAGGGAGCGGCGATGCTGCACAGGAAGGTGACTTCCATTCTGGCG
CTGTTGCAGGGGAGGAAGGAGGAGAATGATCG
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Synonyms
Publications