jgi.p|Nanoce1779_2|633256, mRNA_8998 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|633256
Unique NamemRNA_8998
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2039
Alignment locationscaffold_30:137878..140197 -

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Properties
Property NameValue
TranscriptId633342
TrackFilteredModels2
ProteinId633256
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:137878..140197 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633256gene_8998Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|633256mRNA_8998-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8998CDS_8998Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8998 ID=mRNA_8998|Name=jgi.p|Nanoce1779_2|633256|organism=Nannochloropsis oceanica|type=mRNA|length=2039bp
ACAGGTCCCGTGGAGGCGCGCCTCGGCGCCATGCAGCCCTTCCTCCTCCT
CCTCCTCCTCTTCCAGGCGTCCGTTTCTACTCTGAGCCACGCACAAGAGC
ACCCCCTTCCTTTCAGTCTGTGCGGTCCCGACGCGCTGGGTCTTGATTCA
ATTTCCCTGAACGAATGGCCTGTTGTCCCGGGAAAGGACGTGGTCATCAA
GGCGAGCTACACACCCAATGTGACCGTGACGGGTGGGAAAGCGCTTGCTA
CAGTGCACGTCCTCGGCATCCCCCTGACAGAGACCCGGGATATTTGCAAC
GAGCCCGGCGTAAGATGTCCTTTAATTAAGGGCCAACCTACCACTACCAT
CCTTCGTGATCATGTGCCGAGCTTGACGCCCGGGCTTGGGGTGAGTGTGC
GCGTGGAAATGTATGATGAGTCAGGCGAAAAGTTGATGTGTGTTGAGGTG
CATGTCGATGTAAAGACGCACCCCTTGATCGGGCTACCAGGATGGTTGAA
GCCCTCGTCTTCCTCATTTTCCACATTCGTGTCCTCTTCCTCATCCACGT
CTTTCAATCATTTGTTTTCGGCGTTGCCCGGACGGTCGACGGCGGCTTGG
ATGGGAGGGGGAGGGCTGGGGAGGGGGATGGAGATGGCGATGGAACAGTA
TGTACGGTTACGGTTGCCACTGATATCGACAGGAGCAGCAGATGCAGGAA
AAAGAGATAAGCGGGTAGGAATAGATGGAGGAGAAGGAGAGGAGGTAGGG
CATGCATTGTTGCGGCATGGGAGTGGTAGACGGGTGTAGAGAAAAACAAA
ATTATTGAAAACTATTGTGATGGCTTTTTGGCTACTGACGAAAATATCGG
TGCACACATCCGCAGAAAGTGAAATTGAAAGCATCGAAAGCATCGAAAGG
AAGAGAAATCGATGGCGTTGCTTCTATTGATTGGTCGCATAGAGATGATT
GGCAATTAGTGCTTACCCAAGCTTCTACCCCATTGAGTGTCCAATAAGCC
GGAGCCCGCCCATAGGGTGCGACTACATATGTGTTTTTACAAGAATGCTC
ACATTGCTCAATACCTGCATTGAAACGACACGATACATACACACATGAGA
AACAAACAAAACATCACGAAGGTGCACATCGGGAAGCACAACGAAAAAAA
GATAAAGCATCCAAATCGGAGAAACGTGTAGAAGACGCATAAGCATAAAC
ACACAAAAGCGAACTGTCGAACAAATACACTCTAAAATATGCCTGAAGCA
GGTAGACGGCATTACTGGCATCTTGGAAATATGGCATCTTTATGGGGAGA
AGACAGACGTGAAGGGAAAACCATAACGGGTGCAAATGTCTTGGACTAGT
AAATCGCTCCAAGAAGGGGGAGTCGAAAAGCTCGGGATGAGCTTTCTATG
CTTCACAATTTTTGTGTGAGGTAGGCCGTTTCACACCTTGTTGCCGAACC
TCTATAAAGTTGTTCATGCCGACAAATATCCGTATTTTAAAAAAGTTATT
GACTAACTTACGACGATTAGTTGTGAGATCGATCTTGACCCTGGCCTAGG
TCTATTAGTACCTCAATTTTTGGATGGGTCATTCGTTTCCATAAACGGGA
CTGACGGAATAGACTGCGGATGATAAGGTAGAGCGACATCGAACTTCCCA
ACATCCAATCCCGTGAAATTTAACTCTAAAAGTTATGATACTCTAGAGAA
TTGAAGCGGGGTATATTTACAATCCTACTCAGTGGATAATTTCGAATTCT
GTCACCAAGTGAAGGACACCACGAATCACAGTAACGGTCATTCATGACGC
TGGCAAGCACAGCCAGCGTCCCAAGAGCCATAGGGTGGGTCATGGAATGC
AAGCCCAATGAGGGTCGATTAGATATTCCAGTATCTCGGGTCGGGCTATT
TCAGGGAAGCTGCTATATTGGAAGTTTTGTGGGGGATGTCGGCAGCGGAT
ATCTACGTTGGTAACACCAGGCATATGTGAAGCTCATAGCTTGAGAGTAG
TTCAATGCCCAAGGCTTGAGGGATGGCGATAACAACAAC
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protein sequence of jgi.p|Nanoce1779_2|633256

>mRNA_8998-protein ID=mRNA_8998-protein|Name=jgi.p|Nanoce1779_2|633256|organism=Nannochloropsis oceanica|type=polypeptide|length=253bp
MQPFLLLLLLFQASVSTLSHAQEHPLPFSLCGPDALGLDSISLNEWPVVP
GKDVVIKASYTPNVTVTGGKALATVHVLGIPLTETRDICNEPGVRCPLIK
GQPTTTILRDHVPSLTPGLGVSVRVEMYDESGEKLMCVEVHVDVKTHPLI
GLPGWLKPSSSSFSTFVSSSSSTSFNHLFSALPGRSTAAWMGGGGLGRGM
EMAMEQYVRLRLPLISTGAADAGKRDKRVGIDGGEGEEVGHALLRHGSGR
RV*
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mRNA from alignment at scaffold_30:137878..140197-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8998 ID=mRNA_8998|Name=jgi.p|Nanoce1779_2|633256|organism=Nannochloropsis oceanica|type=mRNA|length=2320bp|location=Sequence derived from alignment at scaffold_30:137878..140197- (Nannochloropsis oceanica)
ACAGGTCCCGTGGAGGCGCGCCTCGGCGCCATGCAGCCCTTCCTCCTCCT
CCTCCTCCTCTTCCAGGCGTCCGTTTCTACTCTGAGCCACGCACAAGAGC
ACCCCCTTCCTTTCAGTCTGTGCGGTCCCGACGCGCTGGGTCTTGATTCA
ATTTCCCTGAACGAATGGCCTGTTGTCCCGGGAAAGGACGTGGTCATCAA
GGCGAGCTACACACCCAATGTGACCGTGACGGGTGGGAAAGCGCTTGCTA
CAGGTTGGTCCGGGTAGGAAGACTTAGAGAGGAAGGACAGAATGGAGATG
GGGAGCGAAAGGGGAGAGGAAGGGGAGAGGAAGGGGGGAGGGGAGAAAGA
ATTGGCATGCGGATCAGAGCGGCTAATTAGAAATTTAATTGTGTTCGCCC
TGGAGTAAACATAGTACAGACCAGGAATTTGGATAGGCAACGGGCAAGAA
AGGTGAGCCCGATGTAATCTCTCTCGGCTCAACCATGTCCTCCTTCCTCC
CCTCCCTCCCTCCCTTTCTCCCTCCCTCCCTCAGTGCACGTCCTCGGCAT
CCCCCTGACAGAGACCCGGGATATTTGCAACGAGCCCGGCGTAAGATGTC
CTTTAATTAAGGGCCAACCTACCACTACCATCCTTCGTGATCATGTGCCG
AGCTTGACGCCCGGGCTTGGGGTGAGTGTGCGCGTGGAAATGTATGATGA
GTCAGGCGAAAAGTTGATGTGTGTTGAGGTGCATGTCGATGTAAAGACGC
ACCCCTTGATCGGGCTACCAGGATGGTTGAAGCCCTCGTCTTCCTCATTT
TCCACATTCGTGTCCTCTTCCTCATCCACGTCTTTCAATCATTTGTTTTC
GGCGTTGCCCGGACGGTCGACGGCGGCTTGGATGGGAGGGGGAGGGCTGG
GGAGGGGGATGGAGATGGCGATGGAACAGTATGTACGGTTACGGTTGCCA
CTGATATCGACAGGAGCAGCAGATGCAGGAAAAAGAGATAAGCGGGTAGG
AATAGATGGAGGAGAAGGAGAGGAGGTAGGGCATGCATTGTTGCGGCATG
GGAGTGGTAGACGGGTGTAGAGAAAAACAAAATTATTGAAAACTATTGTG
ATGGCTTTTTGGCTACTGACGAAAATATCGGTGCACACATCCGCAGAAAG
TGAAATTGAAAGCATCGAAAGCATCGAAAGGAAGAGAAATCGATGGCGTT
GCTTCTATTGATTGGTCGCATAGAGATGATTGGCAATTAGTGCTTACCCA
AGCTTCTACCCCATTGAGTGTCCAATAAGCCGGAGCCCGCCCATAGGGTG
CGACTACATATGTGTTTTTACAAGAATGCTCACATTGCTCAATACCTGCA
TTGAAACGACACGATACATACACACATGAGAAACAAACAAAACATCACGA
AGGTGCACATCGGGAAGCACAACGAAAAAAAGATAAAGCATCCAAATCGG
AGAAACGTGTAGAAGACGCATAAGCATAAACACACAAAAGCGAACTGTCG
AACAAATACACTCTAAAATATGCCTGAAGCAGGTAGACGGCATTACTGGC
ATCTTGGAAATATGGCATCTTTATGGGGAGAAGACAGACGTGAAGGGAAA
ACCATAACGGGTGCAAATGTCTTGGACTAGTAAATCGCTCCAAGAAGGGG
GAGTCGAAAAGCTCGGGATGAGCTTTCTATGCTTCACAATTTTTGTGTGA
GGTAGGCCGTTTCACACCTTGTTGCCGAACCTCTATAAAGTTGTTCATGC
CGACAAATATCCGTATTTTAAAAAAGTTATTGACTAACTTACGACGATTA
GTTGTGAGATCGATCTTGACCCTGGCCTAGGTCTATTAGTACCTCAATTT
TTGGATGGGTCATTCGTTTCCATAAACGGGACTGACGGAATAGACTGCGG
ATGATAAGGTAGAGCGACATCGAACTTCCCAACATCCAATCCCGTGAAAT
TTAACTCTAAAAGTTATGATACTCTAGAGAATTGAAGCGGGGTATATTTA
CAATCCTACTCAGTGGATAATTTCGAATTCTGTCACCAAGTGAAGGACAC
CACGAATCACAGTAACGGTCATTCATGACGCTGGCAAGCACAGCCAGCGT
CCCAAGAGCCATAGGGTGGGTCATGGAATGCAAGCCCAATGAGGGTCGAT
TAGATATTCCAGTATCTCGGGTCGGGCTATTTCAGGGAAGCTGCTATATT
GGAAGTTTTGTGGGGGATGTCGGCAGCGGATATCTACGTTGGTAACACCA
GGCATATGTGAAGCTCATAGCTTGAGAGTAGTTCAATGCCCAAGGCTTGA
GGGATGGCGATAACAACAAC
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Coding sequence (CDS) from alignment at scaffold_30:137878..140197-

>mRNA_8998 ID=mRNA_8998|Name=jgi.p|Nanoce1779_2|633256|organism=Nannochloropsis oceanica|type=CDS|length=1518bp|location=Sequence derived from alignment at scaffold_30:137878..140197- (Nannochloropsis oceanica)
TGCACGTCCTCGGCATCCCCCTGACAGAGACCCGGGATATTTGCAACGAG
CCCGGCGTAAGATGTCCTTTAATTAAGGGCCAACCTACCACTACCATCCT
TCGTGATCATGTGCCGAGCTTGACGCCCGGGCTTGGGGTGAGTGTGCGCG
TGGAAATGTATGATGAGTCAGGCGAAAAGTTGATGTGTGTTGAGGTGCAT
GTCGATGTAAAGACGCACCCCTTGATCGGGCTACCAGGATGGTTGAAGCC
CTCGTCTTCCTCATTTTCCACATTCGTGTCCTCTTCCTCATCCACGTCTT
TCAATCATTTGTTTTCGGCGTTGCCCGGACGGTCGACGGCGGCTTGGATG
GGAGGGGGAGGGCTGGGGAGGGGGATGGAGATGGCGATGGAACAGTATGT
ACGGTTACGGTTGCCACTGATATCGACAGGAGCAGCAGATGCAGGAAAAA
GAGATAAGCGGGTAGGAATAGATGGAGGAGAAGGAGAGGAGGTAGGGCAT
GCATTGTTGCGGCATGGGAGTGGTAGACGGGTGTAGATGCAGCCCTTCCT
CCTCCTCCTCCTCCTCTTCCAGGCGTCCGTTTCTACTCTGAGCCACGCAC
AAGAGCACCCCCTTCCTTTCAGTCTGTGCGGTCCCGACGCGCTGGGTCTT
GATTCAATTTCCCTGAACGAATGGCCTGTTGTCCCGGGAAAGGACGTGGT
CATCAAGGCGAGCTACACACCCAATGTGACCGTGACGGGTGGGAAAGCGC
TTGCTACAGTGCACGTCCTCGGCATCCCCCTGACAGAGACCCGGGATATT
TGCAACGAGCCCGGCGTAAGATGTCCTTTAATTAAGGGCCAACCTACCAC
TACCATCCTTCGTGATCATGTGCCGAGCTTGACGCCCGGGCTTGGGGTGA
GTGTGCGCGTGGAAATGTATGATGAGTCAGGCGAAAAGTTGATGTGTGTT
GAGGTGCATGTCGATGTAAAGACGCACCCCTTGATCGGGCTACCAGGATG
GTTGAAGCCCTCGTCTTCCTCATTTTCCACATTCGTGTCCTCTTCCTCAT
CCACGTCTTTCAATCATTTGTTTTCGGCGTTGCCCGGACGGTCGACGGCG
GCTTGGATGGGAGGGGGAGGGCTGGGGAGGGGGATGGAGATGGCGATGGA
ACAGTATGTACGGTTACGGTTGCCACTGATATCGACAGGAGCAGCAGATG
CAGGAAAAAGAGATAAGCGGGTAGGAATAGATGGAGGAGAAGGAGAGGAG
GTAGGGCATGCATTGTTGCGGCATGGGAGTGGTAGACGGGTGTAGATGCA
GCCCTTCCTCCTCCTCCTCCTCCTCTTCCAGGCGTCCGTTTCTACTCTGA
GCCACGCACAAGAGCACCCCCTTCCTTTCAGTCTGTGCGGTCCCGACGCG
CTGGGTCTTGATTCAATTTCCCTGAACGAATGGCCTGTTGTCCCGGGAAA
GGACGTGGTCATCAAGGCGAGCTACACACCCAATGTGACCGTGACGGGTG
GGAAAGCGCTTGCTACAG
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Synonyms
Publications