jgi.p|Nanoce1779_2|604812, mRNA_8997 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604812
Unique Name	mRNA_8997
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1435
Alignment location	scaffold_30:137876..139310 +

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Properties


Property Name	Value
TranscriptId	604898
Track	FilteredModels2
ProteinId	604812

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_30	supercontig	scaffold_30:137876..139310 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604812	gene_8997	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604812	mRNA_8997-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8997	CDS_8997	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_30:137876..139310+
coding sequence from alignment at scaffold_30:137876..139310+

mRNA sequence

>mRNA_8997 ID=mRNA_8997|Name=jgi.p|Nanoce1779_2|604812|organism=Nannochloropsis oceanica|type=mRNA|length=1435bp
TTGTTGTTGTTATCGCCATCCCTCAAGCCTTGGGCATTGAACTACTCTCA
AGCTATGAGCTTCACATATGCCTGGTGTTACCAACGTAGATATCCGCTGC
CGACATCCCCCACAAAACTTCCAATATAGCAGCTTCCCTGAAATAGCCCG
ACCCGAGATACTGGAATATCTAATCGACCCTCATTGGGCTTGCATTCCAT
GACCCACCCTATGGCTCTTGGGACGCTGGCTGTGCTTGCCAGCGTCATGA
ATGACCGTTACTGTGATTCGTGGTGTCCTTCACTTGGTGACAGAATTCGA
AATTATCCACTGAGTAGGATTGTAAATATACCCCGCTTCAATTCTCTAGA
GTATCATAACTTTTAGAGTTAAATTTCACGGGATTGGATGTTGGGAAGTT
CGATGTCGCTCTACCTTATCATCCGCAGTCTATTCCGTCAGTCCCGTTTA
TGGAAACGAATGACCCATCCAAAAATTGAGGTACTAATAGACCTAGGCCA
GGGTCAAGATCGATCTCACAACTAATCGTCGTAAGTTAGTCAATAACTTT
TTTAAAATACGGATATTTGTCGGCATGAACAACTTTATAGAGGTTCGGCA
ACAAGGTGTGAAACGGCCTACCTCACACAAAAATTGTGAAGCATAGAAAG
CTCATCCCGAGCTTTTCGACTCCCCCTTCTTGGAGCGATTTACTAGTCCA
AGACATTTGCACCCGTTATGGTTTTCCCTTCACGTCTGTCTTCTCCCCAT
AAAGATGCCATATTTCCAAGATGCCAGTAATGCCGTCTACCTGCTTCAGG
CATATTTTAGAGTGTATTTGTTCGACAGTTCGCTTTTGTGTGTTTATGCT
TATGCGTCTTCTACACGTTTCTCCGATTTGGATGCTTTATCTTTTTTTCG
TTGTGCTTCCCGATGTGCACCTTCGTGATGTTTTGTTTGTTTCTCATGTG
TGTATGTATCGTGTCGTTTCAATGCAGGTATTGAGCAATGTGAGCATTCT
TGTAAAAACACATATGTAGTCGCACCCTATGGGCGGGCTCCGGCTTATTG
GACACTCAATGGGGTAGAAGCTTGGGTAAGCACTAATTGCCAATCATCTC
TATGCGACCAATCAATAGAAGCAACGCCATCGATTTCTCTTCCTTTCGAT
GCTTTCGATGCTTTCAATTTCACTTTCTGCGGATGTGTGCACCGATATTT
TCGTCAGTAGCCAAAAAGCCATCACAATAGTTTTCAATAATTTTGTTTTT
CTCTACACCCGTCTACCACTCCCATGCCGCAACAATGCATGCCCTACCTC
CTCTCCTTCTCCTCCATCTATTCCTACCCGCTTATCTCTTTTTCCTGCAT
CTGCTGCTCCTGTCGATATCAGTGGCAACCGTAACCGTACATACTGTTCC
ATCGCCATCTCCATCCCCCTCCCCAGCCCTCCCCC

protein sequence of jgi.p|Nanoce1779_2|604812

>mRNA_8997-protein ID=mRNA_8997-protein|Name=jgi.p|Nanoce1779_2|604812|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MPVMPSTCFRHILECICSTVRFCVFMLMRLLHVSPIWMLYLFFVVLPDVH
LRDVLFVSHVCMYRVVSMQVLSNVSILVKTHM*

mRNA from alignment at scaffold_30:137876..139310+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8997 ID=mRNA_8997|Name=jgi.p|Nanoce1779_2|604812|organism=Nannochloropsis oceanica|type=mRNA|length=1435bp|location=Sequence derived from alignment at scaffold_30:137876..139310+ (Nannochloropsis oceanica)
TTGTTGTTGTTATCGCCATCCCTCAAGCCTTGGGCATTGAACTACTCTCA
AGCTATGAGCTTCACATATGCCTGGTGTTACCAACGTAGATATCCGCTGC
CGACATCCCCCACAAAACTTCCAATATAGCAGCTTCCCTGAAATAGCCCG
ACCCGAGATACTGGAATATCTAATCGACCCTCATTGGGCTTGCATTCCAT
GACCCACCCTATGGCTCTTGGGACGCTGGCTGTGCTTGCCAGCGTCATGA
ATGACCGTTACTGTGATTCGTGGTGTCCTTCACTTGGTGACAGAATTCGA
AATTATCCACTGAGTAGGATTGTAAATATACCCCGCTTCAATTCTCTAGA
GTATCATAACTTTTAGAGTTAAATTTCACGGGATTGGATGTTGGGAAGTT
CGATGTCGCTCTACCTTATCATCCGCAGTCTATTCCGTCAGTCCCGTTTA
TGGAAACGAATGACCCATCCAAAAATTGAGGTACTAATAGACCTAGGCCA
GGGTCAAGATCGATCTCACAACTAATCGTCGTAAGTTAGTCAATAACTTT
TTTAAAATACGGATATTTGTCGGCATGAACAACTTTATAGAGGTTCGGCA
ACAAGGTGTGAAACGGCCTACCTCACACAAAAATTGTGAAGCATAGAAAG
CTCATCCCGAGCTTTTCGACTCCCCCTTCTTGGAGCGATTTACTAGTCCA
AGACATTTGCACCCGTTATGGTTTTCCCTTCACGTCTGTCTTCTCCCCAT
AAAGATGCCATATTTCCAAGATGCCAGTAATGCCGTCTACCTGCTTCAGG
CATATTTTAGAGTGTATTTGTTCGACAGTTCGCTTTTGTGTGTTTATGCT
TATGCGTCTTCTACACGTTTCTCCGATTTGGATGCTTTATCTTTTTTTCG
TTGTGCTTCCCGATGTGCACCTTCGTGATGTTTTGTTTGTTTCTCATGTG
TGTATGTATCGTGTCGTTTCAATGCAGGTATTGAGCAATGTGAGCATTCT
TGTAAAAACACATATGTAGTCGCACCCTATGGGCGGGCTCCGGCTTATTG
GACACTCAATGGGGTAGAAGCTTGGGTAAGCACTAATTGCCAATCATCTC
TATGCGACCAATCAATAGAAGCAACGCCATCGATTTCTCTTCCTTTCGAT
GCTTTCGATGCTTTCAATTTCACTTTCTGCGGATGTGTGCACCGATATTT
TCGTCAGTAGCCAAAAAGCCATCACAATAGTTTTCAATAATTTTGTTTTT
CTCTACACCCGTCTACCACTCCCATGCCGCAACAATGCATGCCCTACCTC
CTCTCCTTCTCCTCCATCTATTCCTACCCGCTTATCTCTTTTTCCTGCAT
CTGCTGCTCCTGTCGATATCAGTGGCAACCGTAACCGTACATACTGTTCC
ATCGCCATCTCCATCCCCCTCCCCAGCCCTCCCCC

Coding sequence (CDS) from alignment at scaffold_30:137876..139310+

>mRNA_8997 ID=mRNA_8997|Name=jgi.p|Nanoce1779_2|604812|organism=Nannochloropsis oceanica|type=CDS|length=249bp|location=Sequence derived from alignment at scaffold_30:137876..139310+ (Nannochloropsis oceanica)
ATGCCAGTAATGCCGTCTACCTGCTTCAGGCATATTTTAGAGTGTATTTG
TTCGACAGTTCGCTTTTGTGTGTTTATGCTTATGCGTCTTCTACACGTTT
CTCCGATTTGGATGCTTTATCTTTTTTTCGTTGTGCTTCCCGATGTGCAC
CTTCGTGATGTTTTGTTTGTTTCTCATGTGTGTATGTATCGTGTCGTTTC
AATGCAGGTATTGAGCAATGTGAGCATTCTTGTAAAAACACATATGTAG

Synonyms

Publications