jgi.p|Nanoce1779_2|673803, mRNA_8996 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|673803
Unique NamemRNA_8996
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1232
Alignment locationscaffold_30:135140..136667 -

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Properties
Property NameValue
TranscriptId673889
TrackFilteredModels2
ProteinId673803
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:135140..136667 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673803gene_8996Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673803mRNA_8996-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8996CDS_8996Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8996 ID=mRNA_8996|Name=jgi.p|Nanoce1779_2|673803|organism=Nannochloropsis oceanica|type=mRNA|length=1232bp
CAGCAAAAGCAATCATTTTCTACTCCAACTCTTCCTCCTCCTCGTCGTTG
CTTGAGTACCATACCCCACCGGGAAGGTACAGCTCACCTATGGACAGTAC
CGCATCCAGCAGGCTCCAGCAGGAAGAAAAAGCAGAATACGGAACGTCAA
TAATGCAGGAAGGCACGACTATCCTCGAGCCCCACAACTTCGACAAGGCT
CCCATGGATGTCGAACTTCGCGACTACCGCTTCCACCAAGCATTGCTCGC
CGAATGGTTCGGGACCACGGCTTTTGTATTTTTTCTCGTCCTCTCCATCA
TGACAGCCAATGCAGACACTGTACGGATCGCCCTTGTGGCTGGATTCACA
TTTTTTAGCATCGTTTACATGCTTGCCAGCGTCTCCGGCGCCCACTTCAA
CCCCGCCGTCACCCTCGGTGTGTGGGCTGCCCGTCGCATCACCACTCTAC
GCTTTATTTGCTACATTATCTTCCAGCTCCTTGGTGGCCTGACGGGCGCG
GCTCTCGCTCGCAGCGTCTCTACCAAGATGTTCCGCAATGTCAATGGAGG
CGCAAACTCCGTCGCCACAGGTATCTCCAAGGGCTCAGCGTTCTGGGTTG
AACTTTTGGGGACTCTGTTTTTAGTAATGGCAGTTCTAGCGGCCCTGGAC
ACGAACATCAATTCTCGTGGCACACTTGCCCCGTTAGAAGTAGCATTGAC
GATCTTTTTGCTTCACGTGGTCTTGCTCCCTTTTACCGGCTGTTCAGTCA
ATCCAGCACGGTCCTTTGGCACGGCTGTGGTAGGAAGGTACTGGCACTTG
CATTGGATTTGGTGGGTCGCACCTTTGGTTGGTGGTCTGTTTGCGGCGTT
ACTGTATTCAATCATATTTTCATTTGGTCAGAGTCCCAAGGAGGAATTGA
GCCACGAGGGGGTGCTGGAGGGTGGGAGGGGAGGACTGGGTGGATTCCTC
GGCAGGGGTCGTGGGGAGCGACAGACGGGAACAGCGGATCGACCTCTGAC
GACAAGCGGTTCCACGGACAGCAGTTTCGATAAGAGCGGAAGGGTGGAAG
AGATGGGAAGAAGCTATACGACGACGGAGAGAGGGCGTGGCACGATCAAT
GTAGAGGAGGAAGGAGGAGAAGAAGCAGGAAGAGGAGGACAAGAAGCAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGCAGATG
TTCCAAGCATGGTTCCAGGACCAGAAGATTAA
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protein sequence of jgi.p|Nanoce1779_2|673803

>mRNA_8996-protein ID=mRNA_8996-protein|Name=jgi.p|Nanoce1779_2|673803|organism=Nannochloropsis oceanica|type=polypeptide|length=381bp
MDSTASSRLQQEEKAEYGTSIMQEGTTILEPHNFDKAPMDVELRDYRFHQ
ALLAEWFGTTAFVFFLVLSIMTANADTVRIALVAGFTFFSIVYMLASVSG
AHFNPAVTLGVWAARRITTLRFICYIIFQLLGGLTGAALARSVSTKMFRN
VNGGANSVATGISKGSAFWVELLGTLFLVMAVLAALDTNINSRGTLAPLE
VALTIFLLHVVLLPFTGCSVNPARSFGTAVVGRYWHLHWIWWVAPLVGGL
FAALLYSIIFSFGQSPKEELSHEGVLEGGRGGLGGFLGRGRGERQTGTAD
RPLTTSGSTDSSFDKSGRVEEMGRSYTTTERGRGTINVEEEGGEEAGRGG
QEAGGGGGGGGGGGGGGEADVPSMVPGPED*
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mRNA from alignment at scaffold_30:135140..136667-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8996 ID=mRNA_8996|Name=jgi.p|Nanoce1779_2|673803|organism=Nannochloropsis oceanica|type=mRNA|length=1528bp|location=Sequence derived from alignment at scaffold_30:135140..136667- (Nannochloropsis oceanica)
CAGCAAAAGCAATCATTTTCTACTCCAACTCTTCCTCCTCCTCGTCGTTG
CTTGAGTACCATACCCCACCGGGAAGGTACAGCTCACCTATGGACAGTAC
CGCATCCAGCAGGCTCCAGCAGGAAGAAAAAGCAGAATACGGAACGTCAA
TAATGCAGGAAGGCACGACTATCCTCGAGCCCCACAACTTCGACAAGGCT
CCCATGGATGTCGAACTTCGCGACTACCGCTTCCACCAAGCATTGCTCGC
CGAATGGTTCGGGACCACGGCTTTTGTATTTTTTCTCGTCCTCTCCATCA
TGACAGCCAATGCAGACACTGTACGGATCGCCCTTGTGGCTGGATTCACA
TTTTTTAGCATCGTTTACATGCTTGCCAGCGTCTCCGGCGCCCACTTCAA
CCCCGCCGTCACCCTCGGTGTGTGGGCTGCCCGTCGCATCACCACTCTAC
GCTTTATTTGCTACATTATCTTCCAGCTCCTTGGTGGCCTGACGGGCGCG
GCTCTCGCTCGCAGCGTCTCTACCAAGATGTTCCGCAATGTCAATGGAGG
CGCAAACTCCGTCGCCACAGGTATCTCCAAGGGCTCAGCGTTCTGGGTTG
AACTTTTGGGGACTCTGTTTTTAGTAATGGCAGTTCTAGCGGCCCTGGAC
ACGAACATCAATTCTCGTGGCACACTTGCCCCGTTAGAAGTAGCATTGAC
GATCTTTTTGCTTCACGTGGTCTTGCTCCCTTTTACCGGCTGTTCAGTCA
ATCCAGCACGGTCCTTTGGCACGGCTGTGGTAGGAAGGTACTGGCACTTG
CATTGGATTTGGTGGGTCGCACCTTTGGTTGGTGGTCTGTTTGCGGCGTT
ACTGTATTCAATCATATTTTCATTTGGTCAGAGTCCCAAGGAGGAATTGA
GCCACGAGGGGGTGCTGGAGGGTGGGAGGGGAGGACTGGGTGGATTCCTC
GGCAGGGGTCGTGGGGAGCGACAGACGGGAACAGCGGATCGACCTCTGAC
GACAAGCGGGTAGGTGTGGTACGTATCATGACGGGGGGGGAAATACGTGA
GAACAGGTGGATACCTACTACACATCGTATTGGTAGTATTTTAATCGACC
TTTACGCCTATGCTCTCTGCTTTTTTAAAATGTATATAAATATAATGTAT
GCTTTCCTAAATAGCGCGTGAATGGGAGAAGGATGACCACCGCCGAGAAA
AAAGGGAAAGGAGAGGTTGCAAAGGGATTGGTGCTATGCCGAGACGCGTC
CCCTAGTAGAACAGGCTGAACTGACCCCTTCCTCGTTATATCCCCCTCTA
TCTAGTTCCACGGACAGCAGTTTCGATAAGAGCGGAAGGGTGGAAGAGAT
GGGAAGAAGCTATACGACGACGGAGAGAGGGCGTGGCACGATCAATGTAG
AGGAGGAAGGAGGAGAAGAAGCAGGAAGAGGAGGACAAGAAGCAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGCAGATGTTCC
AAGCATGGTTCCAGGACCAGAAGATTAA
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Coding sequence (CDS) from alignment at scaffold_30:135140..136667-

>mRNA_8996 ID=mRNA_8996|Name=jgi.p|Nanoce1779_2|673803|organism=Nannochloropsis oceanica|type=CDS|length=2286bp|location=Sequence derived from alignment at scaffold_30:135140..136667- (Nannochloropsis oceanica)
TTCCACGGACAGCAGTTTCGATAAGAGCGGAAGGGTGGAAGAGATGGGAA
GAAGCTATACGACGACGGAGAGAGGGCGTGGCACGATCAATGTAGAGGAG
GAAGGAGGAGAAGAAGCAGGAAGAGGAGGACAAGAAGCAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGAGGCAGATGTTCCAAGCA
TGGTTCCAGGACCAGAAGATTAAATGGACAGTACCGCATCCAGCAGGCTC
CAGCAGGAAGAAAAAGCAGAATACGGAACGTCAATAATGCAGGAAGGCAC
GACTATCCTCGAGCCCCACAACTTCGACAAGGCTCCCATGGATGTCGAAC
TTCGCGACTACCGCTTCCACCAAGCATTGCTCGCCGAATGGTTCGGGACC
ACGGCTTTTGTATTTTTTCTCGTCCTCTCCATCATGACAGCCAATGCAGA
CACTGTACGGATCGCCCTTGTGGCTGGATTCACATTTTTTAGCATCGTTT
ACATGCTTGCCAGCGTCTCCGGCGCCCACTTCAACCCCGCCGTCACCCTC
GGTGTGTGGGCTGCCCGTCGCATCACCACTCTACGCTTTATTTGCTACAT
TATCTTCCAGCTCCTTGGTGGCCTGACGGGCGCGGCTCTCGCTCGCAGCG
TCTCTACCAAGATGTTCCGCAATGTCAATGGAGGCGCAAACTCCGTCGCC
ACAGGTATCTCCAAGGGCTCAGCGTTCTGGGTTGAACTTTTGGGGACTCT
GTTTTTAGTAATGGCAGTTCTAGCGGCCCTGGACACGAACATCAATTCTC
GTGGCACACTTGCCCCGTTAGAAGTAGCATTGACGATCTTTTTGCTTCAC
GTGGTCTTGCTCCCTTTTACCGGCTGTTCAGTCAATCCAGCACGGTCCTT
TGGCACGGCTGTGGTAGGAAGGTACTGGCACTTGCATTGGATTTGGTGGG
TCGCACCTTTGGTTGGTGGTCTGTTTGCGGCGTTACTGTATTCAATCATA
TTTTCATTTGGTCAGAGTCCCAAGGAGGAATTGAGCCACGAGGGGGTGCT
GGAGGGTGGGAGGGGAGGACTGGGTGGATTCCTCGGCAGGGGTCGTGGGG
AGCGACAGACGGGAACAGCGGATCGACCTCTGACGACAAGCGGTTCCACG
GACAGCAGTTTCGATAAGAGCGGAAGGGTGGAAGAGATGGGAAGAAGCTA
TACGACGACGGAGAGAGGGCGTGGCACGATCAATGTAGAGGAGGAAGGAG
GAGAAGAAGCAGGAAGAGGAGGACAAGAAGCAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGAGGCAGATGTTCCAAGCATGGTTCC
AGGACCAGAAGATTAAATGGACAGTACCGCATCCAGCAGGCTCCAGCAGG
AAGAAAAAGCAGAATACGGAACGTCAATAATGCAGGAAGGCACGACTATC
CTCGAGCCCCACAACTTCGACAAGGCTCCCATGGATGTCGAACTTCGCGA
CTACCGCTTCCACCAAGCATTGCTCGCCGAATGGTTCGGGACCACGGCTT
TTGTATTTTTTCTCGTCCTCTCCATCATGACAGCCAATGCAGACACTGTA
CGGATCGCCCTTGTGGCTGGATTCACATTTTTTAGCATCGTTTACATGCT
TGCCAGCGTCTCCGGCGCCCACTTCAACCCCGCCGTCACCCTCGGTGTGT
GGGCTGCCCGTCGCATCACCACTCTACGCTTTATTTGCTACATTATCTTC
CAGCTCCTTGGTGGCCTGACGGGCGCGGCTCTCGCTCGCAGCGTCTCTAC
CAAGATGTTCCGCAATGTCAATGGAGGCGCAAACTCCGTCGCCACAGGTA
TCTCCAAGGGCTCAGCGTTCTGGGTTGAACTTTTGGGGACTCTGTTTTTA
GTAATGGCAGTTCTAGCGGCCCTGGACACGAACATCAATTCTCGTGGCAC
ACTTGCCCCGTTAGAAGTAGCATTGACGATCTTTTTGCTTCACGTGGTCT
TGCTCCCTTTTACCGGCTGTTCAGTCAATCCAGCACGGTCCTTTGGCACG
GCTGTGGTAGGAAGGTACTGGCACTTGCATTGGATTTGGTGGGTCGCACC
TTTGGTTGGTGGTCTGTTTGCGGCGTTACTGTATTCAATCATATTTTCAT
TTGGTCAGAGTCCCAAGGAGGAATTGAGCCACGAGGGGGTGCTGGAGGGT
GGGAGGGGAGGACTGGGTGGATTCCTCGGCAGGGGTCGTGGGGAGCGACA
GACGGGAACAGCGGATCGACCTCTGACGACAAGCGG
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Synonyms
Publications