jgi.p|Nanoce1779_2|604809, mRNA_8995 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604809
Unique NamemRNA_8995
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length792
Alignment locationscaffold_30:134108..134899 -

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Properties
Property NameValue
TranscriptId604895
TrackFilteredModels2
ProteinId604809
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:134108..134899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604809gene_8995Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604809mRNA_8995-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8995CDS_8995Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8995 ID=mRNA_8995|Name=jgi.p|Nanoce1779_2|604809|organism=Nannochloropsis oceanica|type=mRNA|length=792bp
AGAAAAGCAACCGAGAAACCACCACGTTCCAACGAGTCCCTCTCTACCTT
CTCAAGCTCAACCTTCTTCTCCTTCCTCTTCATCTCTTTTTCTTTCTGTT
TTGTTATCTTGATAACTTTGCCATCATCATCTTCTTCTTGCGAGTCCGGA
CCTTGTCTCCCGTGTCATGCAGCTCCTGTCTCGCGAGCACTTAGACAGAC
GATCAACGATCACAATGTGAACAAAATGAGACAAGACTCACCCACTTACC
CACTCACGTAGGCACGCTTTGATAATACAGGATAAGTAGGTAGAGATGTA
CTAGACTATCTTTTCTCATTCTTAAAAACAACCTTGCCTCTCTCCCTCCA
ACCCTCCCTCCTTTCTTCGACCCCGTTGGCGGAAAGAGAAAGCGCCATGC
TGGCCGTTTGCCTGTTGAAACTGTTACTCCTCCCGCTACAGCTGTCGGTC
CCGTCGTTGTTCTTGGTGTCATTATTTCGACTACACACTCTTAGACGCTC
TCTGCTTCTTTCTCTTAAACGTAGTACAACGCATCAATCAAACAGCCTCC
TCAGCTGCCTGAGAGCGCTTTCCTCCACTCCTTTCCTCCCTTGCTCCCTC
CACCTTCCCTTCCTGTCTTCCTTCTCCCATTTTCCGTATTTCCTTGTCTT
CAAACAAGCGTACCTTCCTTCCTTTCCTCTCTCCTTCCTTCCCTTCCACC
CTGCATCCCTCCCTTCTTTCCATGCCTTCACTTAATATTTGACTTAGCTG
CTGCTCCTGTTGCTGCTGCTGTTGCTGCTGCTGCTGTTGCTG
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protein sequence of jgi.p|Nanoce1779_2|604809

>mRNA_8995-protein ID=mRNA_8995-protein|Name=jgi.p|Nanoce1779_2|604809|organism=Nannochloropsis oceanica|type=polypeptide|length=113bp
MLAVCLLKLLLLPLQLSVPSLFLVSLFRLHTLRRSLLLSLKRSTTHQSNS
LLSCLRALSSTPFLPCSLHLPFLSSFSHFPYFLVFKQAYLPSFPLSFLPF
HPASLPSFHAFT*
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mRNA from alignment at scaffold_30:134108..134899-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8995 ID=mRNA_8995|Name=jgi.p|Nanoce1779_2|604809|organism=Nannochloropsis oceanica|type=mRNA|length=792bp|location=Sequence derived from alignment at scaffold_30:134108..134899- (Nannochloropsis oceanica)
AGAAAAGCAACCGAGAAACCACCACGTTCCAACGAGTCCCTCTCTACCTT
CTCAAGCTCAACCTTCTTCTCCTTCCTCTTCATCTCTTTTTCTTTCTGTT
TTGTTATCTTGATAACTTTGCCATCATCATCTTCTTCTTGCGAGTCCGGA
CCTTGTCTCCCGTGTCATGCAGCTCCTGTCTCGCGAGCACTTAGACAGAC
GATCAACGATCACAATGTGAACAAAATGAGACAAGACTCACCCACTTACC
CACTCACGTAGGCACGCTTTGATAATACAGGATAAGTAGGTAGAGATGTA
CTAGACTATCTTTTCTCATTCTTAAAAACAACCTTGCCTCTCTCCCTCCA
ACCCTCCCTCCTTTCTTCGACCCCGTTGGCGGAAAGAGAAAGCGCCATGC
TGGCCGTTTGCCTGTTGAAACTGTTACTCCTCCCGCTACAGCTGTCGGTC
CCGTCGTTGTTCTTGGTGTCATTATTTCGACTACACACTCTTAGACGCTC
TCTGCTTCTTTCTCTTAAACGTAGTACAACGCATCAATCAAACAGCCTCC
TCAGCTGCCTGAGAGCGCTTTCCTCCACTCCTTTCCTCCCTTGCTCCCTC
CACCTTCCCTTCCTGTCTTCCTTCTCCCATTTTCCGTATTTCCTTGTCTT
CAAACAAGCGTACCTTCCTTCCTTTCCTCTCTCCTTCCTTCCCTTCCACC
CTGCATCCCTCCCTTCTTTCCATGCCTTCACTTAATATTTGACTTAGCTG
CTGCTCCTGTTGCTGCTGCTGTTGCTGCTGCTGCTGTTGCTG
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Coding sequence (CDS) from alignment at scaffold_30:134108..134899-

>mRNA_8995 ID=mRNA_8995|Name=jgi.p|Nanoce1779_2|604809|organism=Nannochloropsis oceanica|type=CDS|length=339bp|location=Sequence derived from alignment at scaffold_30:134108..134899- (Nannochloropsis oceanica)
ATGCTGGCCGTTTGCCTGTTGAAACTGTTACTCCTCCCGCTACAGCTGTC
GGTCCCGTCGTTGTTCTTGGTGTCATTATTTCGACTACACACTCTTAGAC
GCTCTCTGCTTCTTTCTCTTAAACGTAGTACAACGCATCAATCAAACAGC
CTCCTCAGCTGCCTGAGAGCGCTTTCCTCCACTCCTTTCCTCCCTTGCTC
CCTCCACCTTCCCTTCCTGTCTTCCTTCTCCCATTTTCCGTATTTCCTTG
TCTTCAAACAAGCGTACCTTCCTTCCTTTCCTCTCTCCTTCCTTCCCTTC
CACCCTGCATCCCTCCCTTCTTTCCATGCCTTCACTTAA
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Synonyms
Publications