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Properties
| Property Name | Value |
|---|
| TranscriptId | 249059 |
| Track | FilteredModels2 |
| ProteinId | 248973 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_30 | supercontig | scaffold_30:117757..121601 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8992 ID=mRNA_8992|Name=jgi.p|Nanoce1779_2|248973|organism=Nannochloropsis oceanica|type=mRNA|length=887bp
AGGGAGGGAAGGAGGGAGGGAGGAAGGACATTTGTCTGTCCTCCTCCTTC
TATGAATTCGCATGGATCGCCGCAGAGACCACCAAAACAATCCTTTCTCG
CCCCTCTCCCCCCAATTTGTTCTGCATTTCTCTCTCATATCCCAGGACCT
GTCCGCGCATGAAGCCCGCCTTGCCATGCTGAAACGGACGCTCTCCCCTC
CCGAGTGCTTTCCCAACCTGTTGCCCTACGCCATGTGGGTGGTGGCCTCC
TCCCCTCCCTCCCTCCCGCCCTTCCAGCAACAGCCTTCCTCCCGACCCTC
AATGCGAGGGGGCGGGGCCAACACTCCCGTCTTCCTCATCAGGCAGCACC
TGGTTTCCAATCTCTACGACAGGCTGAACACTCGCCCGTTCCTGTCGTCA
GTGGAAAAAAGATGGATCACCTTCCAACTCCTCAAGGCCCTGGAGCAGGC
ACATGGCGCGGGCATTGTGCACGGCGACGTGAAGAGTGAAAACGTCCTCG
TCACCTCGTGGAACTGGCTCCTGCTCGCGGACTTTGCTTCCTTCAAGCCC
TCCGTCCTCTCGGACGAGGAGATGAGCGACTACTACTACTTCTTCCACAG
CGCCCAGAGGAGGAGGGGAGGCTTCACCCTGCCCCTCCTCCCGTCGCCCG
CCGGCGTGGCAGCAAGAAATACTACCCGGAAGACTCCGCCCTCATCATCC
TCCTCCACTTCCTCTGCACCCAGCTCCGACACCTTCGGCGGCCATCCGGC
AAGGCCGTGACCCTCCGGCTGCTGTATCGGTTGGGGTGTTACTGCGAGGA
AGACGTACGCCTGAACCGCCTCCTCCCCTACTTCCTCCCTCTCCTCCAGG
ACAGCAGCGCTTACGTCCGCGCCACCGCCCTTCGTGT back to topprotein sequence of jgi.p|Nanoce1779_2|248973 >mRNA_8992-protein ID=mRNA_8992-protein|Name=jgi.p|Nanoce1779_2|248973|organism=Nannochloropsis oceanica|type=polypeptide|length=233bp
MDRRRDHQNNPFSPLSPQFVLHFSLISQDLSAHEARLAMLKRTLSPPECF
PNLLPYAMWVVASSPPSLPPFQQQPSSRPSMRGGGANTPVFLIRQHLVSN
LYDRLNTRPFLSSVEKRWITFQLLKALEQAHGAGIVHGDVKSENVLVTSW
NWLLLADFASFKPSVLSDEEMSDYYYFFHSAQRRRGGFTLPLLPSPAGVA
ARNTTRKTPPSSSSSTSSAPSSDTFGGHPARP* back to topmRNA from alignment at scaffold_30:117757..121601- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8992 ID=mRNA_8992|Name=jgi.p|Nanoce1779_2|248973|organism=Nannochloropsis oceanica|type=mRNA|length=3845bp|location=Sequence derived from alignment at scaffold_30:117757..121601- (Nannochloropsis oceanica)
AGGGAGGGAAGGAGGGAGGGAGGAAGGACATTTGTCTGTCCTCCTCCTTC
TATGAATTCGCATGGATCGCCGCAGAGACCACCAAAACAATCCTTTCTCG
CCCCTCTCCCCCCAATTTGTTCTGCATTTCTCTCTCATATCCCAGGACCT
GTCCGCGCATGAAGCCCGCCTTGCCATGCTGAAACGGACGCTCTCCCCTC
CCGAGTGCTTTCCCAACCTGTTGCCCTACGCCATGTGGGTGGTGGCCTCC
TCCCCTCCCTCCCTCCCGCCCTTCGTAAGTTCACTCTTTCTTTCCGTGTA
TATACTTTCCTTCTTACTTTCCTTCTTACGTTACTTCTTCCCTATTGCCC
TTCGTAAGTTCACACTTTCTTTCTGTGCGTACTCCCTCCCTCCTCCCCTT
CCTCCTCCCCCCTCTCCTCATCCTCCCCCCTCTCCTCATCATCCTCCTCC
TCCTCCTTCTGCTGCTGCTGCTGCTGCTGCTGTGATACCGGCTGTTGCTG
CCGATAAAGAGGGATGCGCTCTGACTCCTCCTTGTCCGCTCTTTTCACCT
TCCCTCCCTCCCTCCCTCCTCCCCTTCCTCCTCCTCCTCCTCCTCCTCCT
CACCAACAACAGCAGCAACAGCCTTCCTCCCGACCCTCAATGCGAGGGGG
CGGGGCCAACACTCCCGTCTTCCTCATCAGGCAGCACCTGGTTTCCAATC
TCTACGACAGGTTCTCTTCCTCCCTCCATCCCTCCCTCCCTCCCTCCCTT
TTTCCTTTTTTCATTCCACCTTCCTCCCTTCCTTCCCTCCCTCGCATTCA
ACATACTCAACACCACCCTACGCACCAATCTCCCCCCTCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCAGGCTGAACACTCGCCCGTTCCTGTC
GTCAGTGGAAAAAAGATGGATCACCTTCCAACTCCTCAAGGCCCTGGAGC
AGGCACATGGGTAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGGACGGGA
ATTGCAACATTGGGCAACACCATTAATTTCCCCACCCTCCCTCCCTCCCT
CCCCCCTCCCCCCTAGCGCGGGCATTGTGCACGGCGACGTGAAGAGTGAA
AACGTCCTCGTCACCTCGTGGAACTGGCTCCTGCTCGCGGACTTTGCTTC
CTTCAAGGTATGCCCTCCCTTCCTCCCCTGGCTTCCTCCCTCCCGTCCAT
TGCTTCCCTCTTTATCTTTTTTTTTTATTCCTGCGAGATTTCTCTTGTCT
TGGCTTGTTTGAACGACACCAACAGACCGAACGGTGCCGCAGTCTGACTC
CCTCCCTCCCTCCAGCCCTCCGTCCTCTCGGACGAGGAGATGAGCGACTA
CTACTACTTCTTCCACAGCGCCCAGAGGAGGAGGGGAGGCTTCACCCTGG
CCCCTGAACGACTGGGGGGGGGGAAGGGGGAGGGAGGGAGGGAGGGAGGG
GGAGGGAAAACTGCCTTGTTGGTGGGCCTGGAAGGAAGGGAGGGAGGGAA
GGAGGGAGGGGAGGAGGAGCTGCGGCCAAGCATGGATATGTTCTCGCTTG
GGTGTGTGCTGGGAGAGATGTATATGGACGGGGAGGGCCCGTTCGATCTT
CCGGGTATGCTGGAGTATCGAGGTGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGAAAGTAAATGAGTCACAGGAGGACGCACATATACATCTGCATCC
ATTTATACATCCATACATCCATCCATCCATCCATCCATTCATACATTCAT
GCATACATGCATACATGCATACATACATGCATACATACATACGTATCTCT
CAGGCTGTTCCTCCGAGAGAGCTTTTCTGCTGGCCCGCACCAACAAGATC
ACCGATCCCATTCTTCAGGTACTTCCTCCTCCCCTCCCTCTATCCCTCTC
TCCCTCCCTCCCTCCCTCCCTCCCCCCCTCCCTCCCTCTTTCTGTCATTT
CAACACACTCATCCGTCCCCCCCTTCCTCCGTTCCTCCCTCCCTCTCTCC
CGTAGGACGTGGTCTGTCGCTTGCTGGCCCGCGATCCACGGAGACGGAAA
TTGAGCGCACAGGCCGTCAGGGAGGAGGTAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGCGATGGAGCGAGGAAGAAAGAGAGGGAGGAAAGGAGGGAGG
GGACAACACATGCACGACAAATCTCAGACCGAATGTACTCTACCCTCCCT
CCCTCTCTCCCTTCCTCGCAGCTGGAGGCCAAGGGGTGGTTCCCCCCGGC
CTTTGCCTCCCTCCTTTTCCCCTTCCTCGCCGCCCTTCAAGCCCCTGATG
TGACAGCGGACGATCGAGTCTACGCCGTCTGCGCCCGGTAACGACCCCTC
CCTCCCTCCCTCCCTCCCCCCCTGCCTCCCTCCCTGCCTCCCTCCCTCCC
TCTCTCCTTCCCCATCTGTCTGTCATCATTCTCAAGCCGTCTGTGTCCGG
TAACGACCCTTTCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCC
TCCCTCCCTCGCTGCCACCCGTCTTACCACTTTCTAGCCCTAATTAAACG
TCCTTCCTCTCCCTCCCCCCCTCCCTAGGTATGGCAGCATTCTCCACGAA
GTGTGCGGTGAGGGGACGGAAGACCCGGAGGGAGAGGTGAGGGTGGAGGG
AGGGAGGGAGGGAAGAAAGGAAGGAGGGGAGGAGGAAGGGAGGGAGACGA
GGAGGGAGATGAGGAGAGAGCGGCAAGGAGATGGAGATAGGAGGGAAAGG
GGGAAGAGGGAAGCGGGCAATGCATTTTTTACCCTTATACTCTCGTCGTA
CGACCATCAATTACTCATCTCCCTCCCTCTCCCTCCCTCTCCCTCCCTCC
CTCCCTCACTCCCTCTCCCTCCCTCCCTCCCTCCCCCCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGGCC
TTTTTCCAGCGGTACTGCAGCTTGGTCCGTCGAGCCGAGGGGTTGGCACT
CGCCGAGGAGGAGGAGGAGGAGGAGGAGGAGAAAGAGGGGGGGGAGGGAG
GGAAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGGGAAGGGGA
GGAAGGGAGGGATGGAGGGAGGGAGAGTCGCTTGAAGCTATGGTGGAGGA
GACTCGGCGCTTCCTCGCTTCTCTAAAAGATGCTTACCCCTCCAACAACA
GCAGCAACAACGACAACATCAACAGCAGCAGTAGCAGCCACCCTTCTCCT
CACCTTTCCTCCTCCTCATCCATTCCCCCCCCCTCCTCCACGTATCCTCC
TCCCCTTCCCCCCCCTCCTTCCCCGTCCGCCCTCCCTTCCTCCCTCCCTC
CCCCTCCTCCCGTCGCCCGCCGGCGTGGCAGCAAGAAATACTACCCGGAA
GACTCCGCCCTCATCATCCTCCTCCACTTCCTCTGCACCCAGCTCCGACA
CCTTCGGCGGCCATCCGTATGTGACGGAGGGAGGGAGGGAGGAAGGGAGG
ATTACAGCTTGACGTCCCTCTCTAGACTAATTTCTCAACCGAACCCACCT
CTTATCCCCTCCCTCCCTCCCTCCCTCCCTCCCTGCCTTCCCTCATCAGG
GCAAGGCCGTGACCCTCCGGCTGCTGTATCGGTTGGGGTGTTACTGCGAG
GAAGACGTACGCCTGAACCGGTGAGGGGGGGGGAGGGAGGGAAGGCGGGA
AGGCGGGGAGTGTAAATATGAAGCAATCCATACCCTCGAAAGCATCTCAC
TCTCCCTCCCTTCCTCCTTCCCTCAGCCTCCTCCCCTACTTCCTCCCTCT
CCTCCAGGACAGCAGCGCTTACGTCCGCGCCACCGCCCTTCGTGT back to topCoding sequence (CDS) from alignment at scaffold_30:117757..121601- >mRNA_8992 ID=mRNA_8992|Name=jgi.p|Nanoce1779_2|248973|organism=Nannochloropsis oceanica|type=CDS|length=4893bp|location=Sequence derived from alignment at scaffold_30:117757..121601- (Nannochloropsis oceanica)
GGCAAGGCCGTGACCCCTCCTCCCGTCGCCCGCCGGCGTGGCAGCAAGAA
ATACTACCCGGAAGACTCCGCCCTCATCATCCTCCTCCACTTCCTCTGCA
CCCAGCTCCGACACCTTCGGCGGCCATCCCCCTCCGTCCTCTCGGACGAG
GAGATGAGCGACTACTACTACTTCTTCCACAGCGCCCAGAGGAGGAGGGG
AGGCTTCACCCTGCGCGGGCATTGTGCACGGCGACGTGAAGAGTGAAAAC
GTCCTCGTCACCTCGTGGAACTGGCTCCTGCTCGCGGACTTTGCTTCCTT
CAAGGCTGAACACTCGCCCGTTCCTGTCGTCAGTGGAAAAAAGATGGATC
ACCTTCCAACTCCTCAAGGCCCTGGAGCAGGCACATGGCAGCAACAGCCT
TCCTCCCGACCCTCAATGCGAGGGGGCGGGGCCAACACTCCCGTCTTCCT
CATCAGGCAGCACCTGGTTTCCAATCTCTACGACAGATGGATCGCCGCAG
AGACCACCAAAACAATCCTTTCTCGCCCCTCTCCCCCCAATTTGTTCTGC
ATTTCTCTCTCATATCCCAGGACCTGTCCGCGCATGAAGCCCGCCTTGCC
ATGCTGAAACGGACGCTCTCCCCTCCCGAGTGCTTTCCCAACCTGTTGCC
CTACGCCATGTGGGTGGTGGCCTCCTCCCCTCCCTCCCTCCCGCCCTTCG
GCAAGGCCGTGACCCCTCCTCCCGTCGCCCGCCGGCGTGGCAGCAAGAAA
TACTACCCGGAAGACTCCGCCCTCATCATCCTCCTCCACTTCCTCTGCAC
CCAGCTCCGACACCTTCGGCGGCCATCCCCCTCCGTCCTCTCGGACGAGG
AGATGAGCGACTACTACTACTTCTTCCACAGCGCCCAGAGGAGGAGGGGA
GGCTTCACCCTGCGCGGGCATTGTGCACGGCGACGTGAAGAGTGAAAACG
TCCTCGTCACCTCGTGGAACTGGCTCCTGCTCGCGGACTTTGCTTCCTTC
AAGGCTGAACACTCGCCCGTTCCTGTCGTCAGTGGAAAAAAGATGGATCA
CCTTCCAACTCCTCAAGGCCCTGGAGCAGGCACATGGCAGCAACAGCCTT
CCTCCCGACCCTCAATGCGAGGGGGCGGGGCCAACACTCCCGTCTTCCTC
ATCAGGCAGCACCTGGTTTCCAATCTCTACGACAGATGGATCGCCGCAGA
GACCACCAAAACAATCCTTTCTCGCCCCTCTCCCCCCAATTTGTTCTGCA
TTTCTCTCTCATATCCCAGGACCTGTCCGCGCATGAAGCCCGCCTTGCCA
TGCTGAAACGGACGCTCTCCCCTCCCGAGTGCTTTCCCAACCTGTTGCCC
TACGCCATGTGGGTGGTGGCCTCCTCCCCTCCCTCCCTCCCGCCCTTCGG
CAAGGCCGTGACCCCTCCTCCCGTCGCCCGCCGGCGTGGCAGCAAGAAAT
ACTACCCGGAAGACTCCGCCCTCATCATCCTCCTCCACTTCCTCTGCACC
CAGCTCCGACACCTTCGGCGGCCATCCCCCTCCGTCCTCTCGGACGAGGA
GATGAGCGACTACTACTACTTCTTCCACAGCGCCCAGAGGAGGAGGGGAG
GCTTCACCCTGCGCGGGCATTGTGCACGGCGACGTGAAGAGTGAAAACGT
CCTCGTCACCTCGTGGAACTGGCTCCTGCTCGCGGACTTTGCTTCCTTCA
AGGCTGAACACTCGCCCGTTCCTGTCGTCAGTGGAAAAAAGATGGATCAC
CTTCCAACTCCTCAAGGCCCTGGAGCAGGCACATGGCAGCAACAGCCTTC
CTCCCGACCCTCAATGCGAGGGGGCGGGGCCAACACTCCCGTCTTCCTCA
TCAGGCAGCACCTGGTTTCCAATCTCTACGACAGATGGATCGCCGCAGAG
ACCACCAAAACAATCCTTTCTCGCCCCTCTCCCCCCAATTTGTTCTGCAT
TTCTCTCTCATATCCCAGGACCTGTCCGCGCATGAAGCCCGCCTTGCCAT
GCTGAAACGGACGCTCTCCCCTCCCGAGTGCTTTCCCAACCTGTTGCCCT
ACGCCATGTGGGTGGTGGCCTCCTCCCCTCCCTCCCTCCCGCCCTTCGGC
AAGGCCGTGACCCCTCCTCCCGTCGCCCGCCGGCGTGGCAGCAAGAAATA
CTACCCGGAAGACTCCGCCCTCATCATCCTCCTCCACTTCCTCTGCACCC
AGCTCCGACACCTTCGGCGGCCATCCCCCTCCGTCCTCTCGGACGAGGAG
ATGAGCGACTACTACTACTTCTTCCACAGCGCCCAGAGGAGGAGGGGAGG
CTTCACCCTGCGCGGGCATTGTGCACGGCGACGTGAAGAGTGAAAACGTC
CTCGTCACCTCGTGGAACTGGCTCCTGCTCGCGGACTTTGCTTCCTTCAA
GGCTGAACACTCGCCCGTTCCTGTCGTCAGTGGAAAAAAGATGGATCACC
TTCCAACTCCTCAAGGCCCTGGAGCAGGCACATGGCAGCAACAGCCTTCC
TCCCGACCCTCAATGCGAGGGGGCGGGGCCAACACTCCCGTCTTCCTCAT
CAGGCAGCACCTGGTTTCCAATCTCTACGACAGATGGATCGCCGCAGAGA
CCACCAAAACAATCCTTTCTCGCCCCTCTCCCCCCAATTTGTTCTGCATT
TCTCTCTCATATCCCAGGACCTGTCCGCGCATGAAGCCCGCCTTGCCATG
CTGAAACGGACGCTCTCCCCTCCCGAGTGCTTTCCCAACCTGTTGCCCTA
CGCCATGTGGGTGGTGGCCTCCTCCCCTCCCTCCCTCCCGCCCTTCGGCA
AGGCCGTGACCCCTCCTCCCGTCGCCCGCCGGCGTGGCAGCAAGAAATAC
TACCCGGAAGACTCCGCCCTCATCATCCTCCTCCACTTCCTCTGCACCCA
GCTCCGACACCTTCGGCGGCCATCCCCCTCCGTCCTCTCGGACGAGGAGA
TGAGCGACTACTACTACTTCTTCCACAGCGCCCAGAGGAGGAGGGGAGGC
TTCACCCTGCGCGGGCATTGTGCACGGCGACGTGAAGAGTGAAAACGTCC
TCGTCACCTCGTGGAACTGGCTCCTGCTCGCGGACTTTGCTTCCTTCAAG
GCTGAACACTCGCCCGTTCCTGTCGTCAGTGGAAAAAAGATGGATCACCT
TCCAACTCCTCAAGGCCCTGGAGCAGGCACATGGCAGCAACAGCCTTCCT
CCCGACCCTCAATGCGAGGGGGCGGGGCCAACACTCCCGTCTTCCTCATC
AGGCAGCACCTGGTTTCCAATCTCTACGACAGATGGATCGCCGCAGAGAC
CACCAAAACAATCCTTTCTCGCCCCTCTCCCCCCAATTTGTTCTGCATTT
CTCTCTCATATCCCAGGACCTGTCCGCGCATGAAGCCCGCCTTGCCATGC
TGAAACGGACGCTCTCCCCTCCCGAGTGCTTTCCCAACCTGTTGCCCTAC
GCCATGTGGGTGGTGGCCTCCTCCCCTCCCTCCCTCCCGCCCTTCGGCAA
GGCCGTGACCCCTCCTCCCGTCGCCCGCCGGCGTGGCAGCAAGAAATACT
ACCCGGAAGACTCCGCCCTCATCATCCTCCTCCACTTCCTCTGCACCCAG
CTCCGACACCTTCGGCGGCCATCCCCCTCCGTCCTCTCGGACGAGGAGAT
GAGCGACTACTACTACTTCTTCCACAGCGCCCAGAGGAGGAGGGGAGGCT
TCACCCTGCGCGGGCATTGTGCACGGCGACGTGAAGAGTGAAAACGTCCT
CGTCACCTCGTGGAACTGGCTCCTGCTCGCGGACTTTGCTTCCTTCAAGG
CTGAACACTCGCCCGTTCCTGTCGTCAGTGGAAAAAAGATGGATCACCTT
CCAACTCCTCAAGGCCCTGGAGCAGGCACATGGCAGCAACAGCCTTCCTC
CCGACCCTCAATGCGAGGGGGCGGGGCCAACACTCCCGTCTTCCTCATCA
GGCAGCACCTGGTTTCCAATCTCTACGACAGATGGATCGCCGCAGAGACC
ACCAAAACAATCCTTTCTCGCCCCTCTCCCCCCAATTTGTTCTGCATTTC
TCTCTCATATCCCAGGACCTGTCCGCGCATGAAGCCCGCCTTGCCATGCT
GAAACGGACGCTCTCCCCTCCCGAGTGCTTTCCCAACCTGTTGCCCTACG
CCATGTGGGTGGTGGCCTCCTCCCCTCCCTCCCTCCCGCCCTTCGGCAAG
GCCGTGACCCCTCCTCCCGTCGCCCGCCGGCGTGGCAGCAAGAAATACTA
CCCGGAAGACTCCGCCCTCATCATCCTCCTCCACTTCCTCTGCACCCAGC
TCCGACACCTTCGGCGGCCATCCCCCTCCGTCCTCTCGGACGAGGAGATG
AGCGACTACTACTACTTCTTCCACAGCGCCCAGAGGAGGAGGGGAGGCTT
CACCCTGCGCGGGCATTGTGCACGGCGACGTGAAGAGTGAAAACGTCCTC
GTCACCTCGTGGAACTGGCTCCTGCTCGCGGACTTTGCTTCCTTCAAGGC
TGAACACTCGCCCGTTCCTGTCGTCAGTGGAAAAAAGATGGATCACCTTC
CAACTCCTCAAGGCCCTGGAGCAGGCACATGGCAGCAACAGCCTTCCTCC
CGACCCTCAATGCGAGGGGGCGGGGCCAACACTCCCGTCTTCCTCATCAG
GCAGCACCTGGTTTCCAATCTCTACGACAGATGGATCGCCGCAGAGACCA
CCAAAACAATCCTTTCTCGCCCCTCTCCCCCCAATTTGTTCTGCATTTCT
CTCTCATATCCCAGGACCTGTCCGCGCATGAAGCCCGCCTTGCCATGCTG
AAACGGACGCTCTCCCCTCCCGAGTGCTTTCCCAACCTGTTGCCCTACGC
CATGTGGGTGGTGGCCTCCTCCCCTCCCTCCCTCCCGCCCTTC back to top
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