jgi.p|Nanoce1779_2|604795, mRNA_8991 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604795
Unique NamemRNA_8991
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length567
Alignment locationscaffold_30:115527..116813 -

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Properties
Property NameValue
TranscriptId604881
TrackFilteredModels2
ProteinId604795
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:115527..116813 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604795gene_8991Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604795mRNA_8991-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8991CDS_8991Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8991 ID=mRNA_8991|Name=jgi.p|Nanoce1779_2|604795|organism=Nannochloropsis oceanica|type=mRNA|length=567bp
CCCCCCCGCCCTTCCTCCCTGACGCGGCGGGCCTTGCTGAGGGATGTGAT
GCATCTTGCCCTCTTCTTCGGGCCCGACACGACTCTCGACCACCTCGTGC
CCCTCCTTTCCACCTTCTTCAACGATAAGGTTGACTGGGAGTTGCGGTTT
GCACTCTGTGACCATATTCCGTCCTTGTGCGCCTTTGTCGGGTCCTGGGC
CACGGCGCAGTTTATTTTGCCCTGCATCGACACGGCCCTGGTGGATGTGG
AGGAGCGTGTGGTGGCCAAGGTCCTGTCATGCCTCGCCACGCTTGTCGAC
CTTGGCCTGCTTCCTCGTTCCTCCCTGTGGGAAAAAACGCGCATGGCGGC
CCATCTGCTGCTCCACCCGTCGGGGGCCGTGAGGCATGAGGCGGTCTTCC
TTCTGAGCACCGTTGCTCACTACGTGGGGTGGCCTGACACGGAGGTGTTT
CTCGTGCCGCTCATTTCTCCCTATCTCAAGTAAGGGATGGATGGAGGGAG
GGAGGGAGAGACGGCCGGATGTATTTGAGAGAAATGTCAACCGTCATGTC
TTCCATGCATGCTTTCG
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protein sequence of jgi.p|Nanoce1779_2|604795

>mRNA_8991-protein ID=mRNA_8991-protein|Name=jgi.p|Nanoce1779_2|604795|organism=Nannochloropsis oceanica|type=polypeptide|length=145bp
MHLALFFGPDTTLDHLVPLLSTFFNDKVDWELRFALCDHIPSLCAFVGSW
ATAQFILPCIDTALVDVEERVVAKVLSCLATLVDLGLLPRSSLWEKTRMA
AHLLLHPSGAVRHEAVFLLSTVAHYVGWPDTEVFLVPLISPYLK*
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mRNA from alignment at scaffold_30:115527..116813-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8991 ID=mRNA_8991|Name=jgi.p|Nanoce1779_2|604795|organism=Nannochloropsis oceanica|type=mRNA|length=1287bp|location=Sequence derived from alignment at scaffold_30:115527..116813- (Nannochloropsis oceanica)
CCCCCCCGCCCTTCCTCCCTGACGCGGCGGGCCTTGCTGAGGGATGTGAT
GCATCTTGCCCTCTTCTTCGGGCCCGACACGACTCTCGACCACCTCGTGC
CCCTCCTTTCCACCTTCTTCAACGATAAGGTGCATTCCCTCCCTCCCTCC
CTCCTCTCGGCCTTACTCCCTCCCTCCTGGCCTGGCAACTTATCAGTTTT
TCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTTTCTCCCTAGGTTGACTGGGAGTTGCGGTTTGCACTCTGT
GACCATATTCCGTCCTTGTGCGCCTTTGTCGGGTCCTGGGCCACGGCGCA
GGTAGGGAGGGAGGGAGGGAGGGAGGAAGGGAGGGAGGGAGGGAGGGAGG
GAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGCTCGCTGTG
ACCATATTCCGTCCTTGTGTGCCTTTGTCGCGTCCTGGGCCACGGCGCAG
GTAGGGAGGGAGGGAGGGAGGGAGCTAGGAATGACCTCCACCGATGCTCA
TACTTTGATGTTCCACATGCGTTGCTAATGCCTACAGTTTATTTTGCCCT
GCATCGACACGGCCCTGGTGGATGTGGAGGAGCGTGTGGTGGCCAAGGTG
AGGAGAAAATAGGGACCGGCGGAGGGAGGGAGGGAGGAAGGGAGGGAGGG
AGGGAGGGAGGGAGGGAAAGGCAAGGCAGGAGTTATGCAAATTGTAGGGT
AACGCTGTAAACGTCATCTTCTGGAGTCTTTCCATACTGGACGAAATTCC
CGTGGTCGCTCACCTCCTTGGACACCCCCCTTCCCTGCCCTTCCTCCCTC
CCTTCCTCCCTCCCTTCCTCCCTCCCTTCCTCCCTCCCACCCCAGGTCCT
GTCATGCCTCGCCACGCTTGTCGACCTTGGCCTGCTTCCTCGTTCCTCCC
TGTGGGAAAAAACGCGCATGGCGGCCCATCTGCTGCTCCACCCGTCGGGG
GCCGTGAGGCATGAGGTAGGGAGGGAAAGAGGGAGGGAGGGAGGGAGGGA
AAGGAGGGAGGGAAAGGAGGAATGCTGCTGCTCATTATTGTCACTCAACT
TTCTACACAGGCGGTCTTCCTTCTGAGCACCGTTGCTCACTACGTGGGGT
GGCCTGACACGGAGGTGTTTCTCGTGCCGCTCATTTCTCCCTATCTCAAG
TAAGGGATGGATGGAGGGAGGGAGGGAGAGACGGCCGGATGTATTTGAGA
GAAATGTCAACCGTCATGTCTTCCATGCATGCTTTCG
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Coding sequence (CDS) from alignment at scaffold_30:115527..116813-

>mRNA_8991 ID=mRNA_8991|Name=jgi.p|Nanoce1779_2|604795|organism=Nannochloropsis oceanica|type=CDS|length=2175bp|location=Sequence derived from alignment at scaffold_30:115527..116813- (Nannochloropsis oceanica)
GCGGTCTTCCTTCTGAGCACCGTTGCTCACTACGTGGGGTGGCCTGACAC
GGAGGTGTTTCTCGTGCCGCTCATTTCTCCCTATCTCAAGTAAGTCCTGT
CATGCCTCGCCACGCTTGTCGACCTTGGCCTGCTTCCTCGTTCCTCCCTG
TGGGAAAAAACGCGCATGGCGGCCCATCTGCTGCTCCACCCGTCGGGGGC
CGTGAGGCATGAGTTTATTTTGCCCTGCATCGACACGGCCCTGGTGGATG
TGGAGGAGCGTGTGGTGGCCAAGGTTGACTGGGAGTTGCGGTTTGCACTC
TGTGACCATATTCCGTCCTTGTGCGCCTTTGTCGGGTCCTGGGCCACGGC
GCAGATGCATCTTGCCCTCTTCTTCGGGCCCGACACGACTCTCGACCACC
TCGTGCCCCTCCTTTCCACCTTCTTCAACGATAAGGCGGTCTTCCTTCTG
AGCACCGTTGCTCACTACGTGGGGTGGCCTGACACGGAGGTGTTTCTCGT
GCCGCTCATTTCTCCCTATCTCAAGTAAGTCCTGTCATGCCTCGCCACGC
TTGTCGACCTTGGCCTGCTTCCTCGTTCCTCCCTGTGGGAAAAAACGCGC
ATGGCGGCCCATCTGCTGCTCCACCCGTCGGGGGCCGTGAGGCATGAGTT
TATTTTGCCCTGCATCGACACGGCCCTGGTGGATGTGGAGGAGCGTGTGG
TGGCCAAGGTTGACTGGGAGTTGCGGTTTGCACTCTGTGACCATATTCCG
TCCTTGTGCGCCTTTGTCGGGTCCTGGGCCACGGCGCAGATGCATCTTGC
CCTCTTCTTCGGGCCCGACACGACTCTCGACCACCTCGTGCCCCTCCTTT
CCACCTTCTTCAACGATAAGGCGGTCTTCCTTCTGAGCACCGTTGCTCAC
TACGTGGGGTGGCCTGACACGGAGGTGTTTCTCGTGCCGCTCATTTCTCC
CTATCTCAAGTAAGTCCTGTCATGCCTCGCCACGCTTGTCGACCTTGGCC
TGCTTCCTCGTTCCTCCCTGTGGGAAAAAACGCGCATGGCGGCCCATCTG
CTGCTCCACCCGTCGGGGGCCGTGAGGCATGAGTTTATTTTGCCCTGCAT
CGACACGGCCCTGGTGGATGTGGAGGAGCGTGTGGTGGCCAAGGTTGACT
GGGAGTTGCGGTTTGCACTCTGTGACCATATTCCGTCCTTGTGCGCCTTT
GTCGGGTCCTGGGCCACGGCGCAGATGCATCTTGCCCTCTTCTTCGGGCC
CGACACGACTCTCGACCACCTCGTGCCCCTCCTTTCCACCTTCTTCAACG
ATAAGGCGGTCTTCCTTCTGAGCACCGTTGCTCACTACGTGGGGTGGCCT
GACACGGAGGTGTTTCTCGTGCCGCTCATTTCTCCCTATCTCAAGTAAGT
CCTGTCATGCCTCGCCACGCTTGTCGACCTTGGCCTGCTTCCTCGTTCCT
CCCTGTGGGAAAAAACGCGCATGGCGGCCCATCTGCTGCTCCACCCGTCG
GGGGCCGTGAGGCATGAGTTTATTTTGCCCTGCATCGACACGGCCCTGGT
GGATGTGGAGGAGCGTGTGGTGGCCAAGGTTGACTGGGAGTTGCGGTTTG
CACTCTGTGACCATATTCCGTCCTTGTGCGCCTTTGTCGGGTCCTGGGCC
ACGGCGCAGATGCATCTTGCCCTCTTCTTCGGGCCCGACACGACTCTCGA
CCACCTCGTGCCCCTCCTTTCCACCTTCTTCAACGATAAGGCGGTCTTCC
TTCTGAGCACCGTTGCTCACTACGTGGGGTGGCCTGACACGGAGGTGTTT
CTCGTGCCGCTCATTTCTCCCTATCTCAAGTAAGTCCTGTCATGCCTCGC
CACGCTTGTCGACCTTGGCCTGCTTCCTCGTTCCTCCCTGTGGGAAAAAA
CGCGCATGGCGGCCCATCTGCTGCTCCACCCGTCGGGGGCCGTGAGGCAT
GAGTTTATTTTGCCCTGCATCGACACGGCCCTGGTGGATGTGGAGGAGCG
TGTGGTGGCCAAGGTTGACTGGGAGTTGCGGTTTGCACTCTGTGACCATA
TTCCGTCCTTGTGCGCCTTTGTCGGGTCCTGGGCCACGGCGCAGATGCAT
CTTGCCCTCTTCTTCGGGCCCGACACGACTCTCGACCACCTCGTGCCCCT
CCTTTCCACCTTCTTCAACGATAAG
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Synonyms
Publications