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Properties
| Property Name | Value |
|---|
| TranscriptId | 574645 |
| Track | FilteredModels2 |
| ProteinId | 574559 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:690577..694080 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_899 ID=mRNA_899|Name=jgi.p|Nanoce1779_2|574559|organism=Nannochloropsis oceanica|type=mRNA|length=3001bp
AGGAGCGCCCAAGCTCTCGTCTCAGAGCCTTCTTCGTCACCACCCAACAC
AGAAAGCGCAGACAACTACCATGGCAGTGGTGGGCATTGACCTGGGGAAC
CTGAACATTGTGATTGCGCAGGCTCAACGCGGCGGCGTGGACGTGATCTT
AAATGAAAACTCCAACCGGCAAAATCCTAACATGGTGTCCATTGCGGAGA
AACAACGCTATGTGGGCGAGCAAGCCGTGACGCTGGCGCGGTCCAACTAC
AAAAACACGATTTATGCCACCAAGCGCTTGATCGGAAAAAAATACGACGA
GCCAGATGTGCAGCAGGAGATTCAATCATTGCCTTTCAAGATTATCAAAC
TGCCCAAGGGTGGGGTTGGATACGAGGTCTCCTATGGTGGGGAGCCGACA
GTGCTGTCACCCGAACAGGTGGTGGCGATGCTCTTTGGGAAGGTGAATGA
GATCGTCAAGAACAACAACAATGGAACCCCCATTGCCGAGGCTGTCGTGG
CTATCCCTGGTTGGTTCACCGATTCCCAGCGCCGCGCTGTTTTAGATGCC
GCTGAGATTTCCGGCTTAAACGTGTTGCGGCTCATGCATGAATCTACTGC
TGTGGCGCTGTCTTACGGGATCTACAAGTCCGTCCGCAGCCTGTTCCATG
AAAGCGAGCCGCAGCATGTCCTCTTTCTCGATTTGGGCCATTCCAATTTT
TGTGCGTCGGTGGTCGCTTTTATCCAGGGCAAGCTTATCGTCAAGTCGGC
TGTTTATGACCGGAGCTTGGGCGGGCGGGATTTCGACAAGCAAATCGTGG
ACTTCCTGGCGGAGCAGTTCCAGGCCAAGTCCAAGCTGGGCGACCCGCGG
GAGAATGCCAAGGCGATGTTGAAGCTCCAGGCCGCGGCGGAGAAGGCGAA
GAAGACTCTGTCGCCTGCAGGGGTAACGGAGGCGTCCATCTCGGTGGAAT
GTGTGATGGAAGATACGGACCTGAATACGGCCTTGTCTCTGGAGGAGTTC
GAGAGGCGCGTGCAGCCTCTACTGGCTCGGTTGGAAGCGCCTATCTCACA
GGCCTTGGCTGAGGCGGGCGTCACACCTGAGCAGCTTGCGAATGTAGAGG
TGGTGGGCGGGGGTACGCGTGTGAATTCGGTGAAGCTGCACATTGCCGGC
TTGCTCCACCTGGACAAGACCAAGCTAAATTACGGCCTCAGCACCACCCT
CAATGCTGATGAGGCTGTTTCCCGTGGCTGCGCACTGCAGGCTGCTATCC
TCTCTTCCCGTTTTCAAGTCAAGCCTTTTGAGGTCCTTGAGGCGTGCCCT
TACCCGATTAACTTGAGCTGGGAAGAATCGCCGTCTGCCGCTGCCCCCAT
GGACGAGGACGAACCTGCGGCTGGCGGGGAAGGTGAGGAAGCGGCCGTCA
AAGCGGGGGAAGGCTCGGTGTTGTTGTTCAAGCGTAATGACAAGGTACCG
AACCAGCGGCGGGTTACTTTTCACAAGGATGCCGACTTCACCGTTACTGC
CGCGTATGACAAGTCGGCCCTACCCTTGCTTCCCCCCGGGACCAGCACGG
ATATCGCCTCCTTCCAGGTGGCTCTTCCCAAGGAACATCAAGGCATGGGG
GACAAGTCCAAGGTCCGCCTCACCCTTGTCTACAACTTGCACGGCGTCCT
CGTCATGAATCAAGCTCAACTCATGGAGGAGGTGACAGTTGGCCCCACTG
CTACCAACGCCTCTGAGACGGGCAAGGTAGAGGCCGAGGGTGACAAGGCA
GCCGAGGCGGCAGGAGAAAGTGTGGCGGCGGACGGTGCACCGGCTCCAGA
AGGCGCCGCGGCAGTGCATGAGGAGAAAAAGGAGGAGAAGCCTGCCCAGG
CCGAGCCTGCGACGCCTGCTGCGGGGACGAAGAAGAAGTTTAAAACGCAC
TCGTTGTCCGTGGTGACCGTGGCTCCGGGTTTGAGCAAGGCGGAGAAGGA
TGCGTTTGTGGAGGCAGAGGCGCAGATGGAACAGCAGGATAGGATTATTC
GGGAGACGGCGGATACGCGCAATGCCTTGGAATCTTATATTTACGATTTG
AAGGCCAAGTTGGGGGATAAGCTCAAGCCGTTCGCTGAAGAATCGGCGGC
CGCCGCATTTAATACACAATTGGAGGACATGGAGACCTGGTTATATGGCG
ATGAAGGCTTTGATTCTACCAAATCCGTGTACGCTAGCAAGTTGGCTACG
CTCCGGTCGGTGGGCGACCCTATTCAGCAGCGCTCGGACGAGGCCAGCAA
GCGTGAGCCGGCCCGTGTCGAGTTCTGCCGTCAGTTGGAGGAGTACAAGA
CGCTAGTGAAGTCAGCGGAAGAGAAGTACAGCCACATAACGGACGAGGAG
CGCAATAAGGTTCGCGAGGAAGTGACGGCCGCCGAATCCTGGCTCTACGA
CCAGCTCGCCAAGCAAACAGAGCTACCCTCTTATGCCGACCCCGTTCTAA
CGGTGGCCGCCATCAAGGAGCGACAAAATGCGGTGGCTCACGCTGTATTG
CCGGTCATGAATCGGCCCAAGCCTCCTCCTCAGGCCCCGGCACCCACGCC
TGCTGTTGACGAGAAGGCGGCCGCCCCACAGCCAGAAGAAGAGGTTGCCG
AGGCACCAGCTGCCGAGACGGGAGCGACAGAAGCGACGTCCATGGACGAA
GGTGTGGCTCCTACAGCGGAGGGGGAAGAAGAGGTGCCGATGGATACAGC
TTCGTAATCGGGATGGGGGAAAAAAACCTCTGTGTGGGCTGTCAGTTGAT
ACTATTAGAGGTCTTTTGTTTTGTTTGTGGCTGCGTGTGTGTGTTTGCAT
GAGAAATAGACTTGAGAATATCGGAAGGAACTTTGACATGGTAAACGAGG
AAAAGAAAATCTTCAAAAAGGAATAAGGGGTAAAAACAAGGAGCACCGGG
TCTCTTTAGAAATGCTTCTCGGCGGAAAACCAGAAAAAAAGGTAGAATAT
GTCGACTTTTTCGCTTATCATTATAGAATGAAAGATCGAATGGCCAAGGG
A back to topprotein sequence of jgi.p|Nanoce1779_2|574559 >mRNA_899-protein ID=mRNA_899-protein|Name=jgi.p|Nanoce1779_2|574559|organism=Nannochloropsis oceanica|type=polypeptide|length=879bp
MAVVGIDLGNLNIVIAQAQRGGVDVILNENSNRQNPNMVSIAEKQRYVGE
QAVTLARSNYKNTIYATKRLIGKKYDEPDVQQEIQSLPFKIIKLPKGGVG
YEVSYGGEPTVLSPEQVVAMLFGKVNEIVKNNNNGTPIAEAVVAIPGWFT
DSQRRAVLDAAEISGLNVLRLMHESTAVALSYGIYKSVRSLFHESEPQHV
LFLDLGHSNFCASVVAFIQGKLIVKSAVYDRSLGGRDFDKQIVDFLAEQF
QAKSKLGDPRENAKAMLKLQAAAEKAKKTLSPAGVTEASISVECVMEDTD
LNTALSLEEFERRVQPLLARLEAPISQALAEAGVTPEQLANVEVVGGGTR
VNSVKLHIAGLLHLDKTKLNYGLSTTLNADEAVSRGCALQAAILSSRFQV
KPFEVLEACPYPINLSWEESPSAAAPMDEDEPAAGGEGEEAAVKAGEGSV
LLFKRNDKVPNQRRVTFHKDADFTVTAAYDKSALPLLPPGTSTDIASFQV
ALPKEHQGMGDKSKVRLTLVYNLHGVLVMNQAQLMEEVTVGPTATNASET
GKVEAEGDKAAEAAGESVAADGAPAPEGAAAVHEEKKEEKPAQAEPATPA
AGTKKKFKTHSLSVVTVAPGLSKAEKDAFVEAEAQMEQQDRIIRETADTR
NALESYIYDLKAKLGDKLKPFAEESAAAAFNTQLEDMETWLYGDEGFDST
KSVYASKLATLRSVGDPIQQRSDEASKREPARVEFCRQLEEYKTLVKSAE
EKYSHITDEERNKVREEVTAAESWLYDQLAKQTELPSYADPVLTVAAIKE
RQNAVAHAVLPVMNRPKPPPQAPAPTPAVDEKAAAPQPEEEVAEAPAAET
GATEATSMDEGVAPTAEGEEEVPMDTAS* back to topmRNA from alignment at scaffold_2:690577..694080+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_899 ID=mRNA_899|Name=jgi.p|Nanoce1779_2|574559|organism=Nannochloropsis oceanica|type=mRNA|length=3504bp|location=Sequence derived from alignment at scaffold_2:690577..694080+ (Nannochloropsis oceanica)
AGGAGCGCCCAAGCTCTCGTCTCAGAGCCTTCTTCGTCACCACCCAACAC
AGAAAGGTGAGGATCTTCTATGGAATGCGTGTGTTCCTTGGTTTTTCGAT
GCGTACTTTTAAGAGTGTACTGGGTGTGTGGGAGGCGTTCCCAGCGGTAT
GTTAGAGCGAATACATGCAGGCCAGCGGCATGTGCGAAAGTTGTGGGCGG
GGTTTCGGATCTCGTCATTTTCCTGCTCCATTTCATGCCATGGCCTCGGG
CCTCGCTCACACGAGCAGCTGTGCCTTGCCGAGACTGACGTGTCTACCAC
TGCGTGTTTGTGTCAACCAGTGGCAAAGGTTGGGAGGCGTAACAACTGCA
GAGGCTGGCCTACCGATCGTTCATCCTGGAGATGCGGATGTTGCTTTTCT
CCCTGTGTCGTCTCCTTCGCCTAGTGATTCTTGTCCTCTCATCACCCTCG
CAGACTTTGTTGTTGAAAAAGTTCATGCTTTTCGGTATTGTTTAATCGCT
TTCATTAAACAGCCTCTGACCCTCTTTCCTCTTTCCCCTTTTTTCTTGCT
CATCCCAAGCGCAGACAACTACCATGGCAGTGGTGGGCATTGACCTGGGG
AACCTGAACATTGTGATTGCGCAGGCTCAACGCGGCGGCGTGGACGTGAT
CTTAAATGAAAACTCCAACCGGCAAAATCCTAACATGGTGTCCATTGCGG
AGAAACAACGCTATGTGGGCGAGCAAGCCGTGACGCTGGCGCGGTCCAAC
TACAAAAACACGATTTATGCCACCAAGCGCTTGATCGGAAAAAAATACGA
CGAGCCAGATGTGCAGCAGGAGATTCAATCATTGCCTTTCAAGATTATCA
AACTGCCCAAGGGTGGGGTTGGATACGAGGTCTCCTATGGTGGGGAGCCG
ACAGTGCTGTCACCCGAACAGGTGGTGGCGATGCTCTTTGGGAAGGTGAA
TGAGATCGTCAAGAACAACAACAATGGAACCCCCATTGCCGAGGCTGTCG
TGGCTATCCCTGGTTGGTTCACCGATTCCCAGCGCCGCGCTGTTTTAGAT
GCCGCTGAGATTTCCGGCTTAAACGTGTTGCGGCTCATGCATGAATCTAC
TGCTGTGGCGCTGTCTTACGGGATCTACAAGTCCGTCCGCAGCCTGTTCC
ATGAAAGCGAGCCGCAGCATGTCCTCTTTCTCGATTTGGGCCATTCCAAT
TTTTGTGCGTCGGTGGTCGCTTTTATCCAGGGCAAGCTTATCGTCAAGTC
GGCTGTTTATGACCGGAGCTTGGGCGGGCGGGATTTCGACAAGCAAATCG
TGGACTTCCTGGCGGAGCAGTTCCAGGCCAAGTCCAAGCTGGGCGACCCG
CGGGAGAATGCCAAGGCGATGTTGAAGCTCCAGGCCGCGGCGGAGAAGGC
GAAGAAGACTCTGTCGCCTGCAGGGGTAACGGAGGCGTCCATCTCGGTGG
AATGTGTGATGGAAGATACGGACCTGAATACGGCCTTGTCTCTGGAGGAG
TTCGAGAGGCGCGTGCAGCCTCTACTGGCTCGGTTGGAAGCGCCTATCTC
ACAGGCCTTGGCTGAGGCGGGCGTCACACCTGAGCAGCTTGCGAATGTAG
AGGTGGTGGGCGGGGGTACGCGTGTGAATTCGGTGAAGCTGCACATTGCC
GGCTTGCTCCACCTGGACAAGACCAAGCTAAATTACGGCCTCAGCACCAC
CCTCAATGCTGATGAGGCTGTTTCCCGTGGCTGCGCACTGCAGGCTGCTA
TCCTCTCTTCCCGTTTTCAAGTCAAGCCTTTTGAGGTCCTTGAGGCGTGC
CCTTACCCGATTAACTTGAGCTGGGAAGAATCGCCGTCTGCCGCTGCCCC
CATGGACGAGGACGAACCTGCGGCTGGCGGGGAAGGTGAGGAAGCGGCCG
TCAAAGCGGGGGAAGGCTCGGTGTTGTTGTTCAAGCGTAATGACAAGGTA
CCGAACCAGCGGCGGGTTACTTTTCACAAGGATGCCGACTTCACCGTTAC
TGCCGCGTATGACAAGTCGGCCCTACCCTTGCTTCCCCCCGGGACCAGCA
CGGATATCGCCTCCTTCCAGGTGGCTCTTCCCAAGGAACATCAAGGCATG
GGGGACAAGTCCAAGGTCCGCCTCACCCTTGTCTACAACTTGCACGGCGT
CCTCGTCATGAATCAAGCTCAACTCATGGAGGAGGTGACAGTTGGCCCCA
CTGCTACCAACGCCTCTGAGACGGGCAAGGTAGAGGCCGAGGGTGACAAG
GCAGCCGAGGCGGCAGGAGAAAGTGTGGCGGCGGACGGTGCACCGGCTCC
AGAAGGCGCCGCGGCAGTGCATGAGGAGAAAAAGGAGGAGAAGCCTGCCC
AGGCCGAGCCTGCGACGCCTGCTGCGGGGACGAAGAAGAAGTTTAAAACG
CACTCGTTGTCCGTGGTGACCGTGGCTCCGGGTTTGAGCAAGGCGGAGAA
GGATGCGTTTGTGGAGGCAGAGGCGCAGATGGAACAGCAGGATAGGATTA
TTCGGGAGACGGCGGATACGCGCAATGCCTTGGAATCTTATATTTACGAT
TTGAAGGCCAAGTTGGGGGATAAGCTCAAGCCGTTCGCTGAAGAATCGGC
GGCCGCCGCATTTAATACACAATTGGAGGACATGGAGACCTGGTTATATG
GCGATGAAGGCTTTGATTCTACCAAATCCGTGTACGCTAGCAAGTTGGCT
ACGCTCCGGTCGGTGGGCGACCCTATTCAGCAGCGCTCGGACGAGGCCAG
CAAGCGTGAGCCGGCCCGTGTCGAGTTCTGCCGTCAGTTGGAGGAGTACA
AGACGCTAGTGAAGTCAGCGGAAGAGAAGTACAGCCACATAACGGACGAG
GAGCGCAATAAGGTTCGCGAGGAAGTGACGGCCGCCGAATCCTGGCTCTA
CGACCAGCTCGCCAAGCAAACAGAGCTACCCTCTTATGCCGACCCCGTTC
TAACGGTGGCCGCCATCAAGGAGCGACAAAATGCGGTGGCTCACGCTGTA
TTGCCGGTCATGAATCGGCCCAAGCCTCCTCCTCAGGCCCCGGCACCCAC
GCCTGCTGTTGACGAGAAGGCGGCCGCCCCACAGCCAGAAGAAGAGGTTG
CCGAGGCACCAGCTGCCGAGACGGGAGCGACAGAAGCGACGTCCATGGAC
GAAGGTGTGGCTCCTACAGCGGAGGGGGAAGAAGAGGTGCCGATGGATAC
AGCTTCGTAATCGGGATGGGGGAAAAAAACCTCTGTGTGGGCTGTCAGTT
GATACTATTAGAGGTCTTTTGTTTTGTTTGTGGCTGCGTGTGTGTGTTTG
CATGAGAAATAGACTTGAGAATATCGGAAGGAACTTTGACATGGTAAACG
AGGAAAAGAAAATCTTCAAAAAGGAATAAGGGGTAAAAACAAGGAGCACC
GGGTCTCTTTAGAAATGCTTCTCGGCGGAAAACCAGAAAAAAAGGTAGAA
TATGTCGACTTTTTCGCTTATCATTATAGAATGAAAGATCGAATGGCCAA
GGGA back to topCoding sequence (CDS) from alignment at scaffold_2:690577..694080+ >mRNA_899 ID=mRNA_899|Name=jgi.p|Nanoce1779_2|574559|organism=Nannochloropsis oceanica|type=CDS|length=2637bp|location=Sequence derived from alignment at scaffold_2:690577..694080+ (Nannochloropsis oceanica)
ATGGCAGTGGTGGGCATTGACCTGGGGAACCTGAACATTGTGATTGCGCA
GGCTCAACGCGGCGGCGTGGACGTGATCTTAAATGAAAACTCCAACCGGC
AAAATCCTAACATGGTGTCCATTGCGGAGAAACAACGCTATGTGGGCGAG
CAAGCCGTGACGCTGGCGCGGTCCAACTACAAAAACACGATTTATGCCAC
CAAGCGCTTGATCGGAAAAAAATACGACGAGCCAGATGTGCAGCAGGAGA
TTCAATCATTGCCTTTCAAGATTATCAAACTGCCCAAGGGTGGGGTTGGA
TACGAGGTCTCCTATGGTGGGGAGCCGACAGTGCTGTCACCCGAACAGGT
GGTGGCGATGCTCTTTGGGAAGGTGAATGAGATCGTCAAGAACAACAACA
ATGGAACCCCCATTGCCGAGGCTGTCGTGGCTATCCCTGGTTGGTTCACC
GATTCCCAGCGCCGCGCTGTTTTAGATGCCGCTGAGATTTCCGGCTTAAA
CGTGTTGCGGCTCATGCATGAATCTACTGCTGTGGCGCTGTCTTACGGGA
TCTACAAGTCCGTCCGCAGCCTGTTCCATGAAAGCGAGCCGCAGCATGTC
CTCTTTCTCGATTTGGGCCATTCCAATTTTTGTGCGTCGGTGGTCGCTTT
TATCCAGGGCAAGCTTATCGTCAAGTCGGCTGTTTATGACCGGAGCTTGG
GCGGGCGGGATTTCGACAAGCAAATCGTGGACTTCCTGGCGGAGCAGTTC
CAGGCCAAGTCCAAGCTGGGCGACCCGCGGGAGAATGCCAAGGCGATGTT
GAAGCTCCAGGCCGCGGCGGAGAAGGCGAAGAAGACTCTGTCGCCTGCAG
GGGTAACGGAGGCGTCCATCTCGGTGGAATGTGTGATGGAAGATACGGAC
CTGAATACGGCCTTGTCTCTGGAGGAGTTCGAGAGGCGCGTGCAGCCTCT
ACTGGCTCGGTTGGAAGCGCCTATCTCACAGGCCTTGGCTGAGGCGGGCG
TCACACCTGAGCAGCTTGCGAATGTAGAGGTGGTGGGCGGGGGTACGCGT
GTGAATTCGGTGAAGCTGCACATTGCCGGCTTGCTCCACCTGGACAAGAC
CAAGCTAAATTACGGCCTCAGCACCACCCTCAATGCTGATGAGGCTGTTT
CCCGTGGCTGCGCACTGCAGGCTGCTATCCTCTCTTCCCGTTTTCAAGTC
AAGCCTTTTGAGGTCCTTGAGGCGTGCCCTTACCCGATTAACTTGAGCTG
GGAAGAATCGCCGTCTGCCGCTGCCCCCATGGACGAGGACGAACCTGCGG
CTGGCGGGGAAGGTGAGGAAGCGGCCGTCAAAGCGGGGGAAGGCTCGGTG
TTGTTGTTCAAGCGTAATGACAAGGTACCGAACCAGCGGCGGGTTACTTT
TCACAAGGATGCCGACTTCACCGTTACTGCCGCGTATGACAAGTCGGCCC
TACCCTTGCTTCCCCCCGGGACCAGCACGGATATCGCCTCCTTCCAGGTG
GCTCTTCCCAAGGAACATCAAGGCATGGGGGACAAGTCCAAGGTCCGCCT
CACCCTTGTCTACAACTTGCACGGCGTCCTCGTCATGAATCAAGCTCAAC
TCATGGAGGAGGTGACAGTTGGCCCCACTGCTACCAACGCCTCTGAGACG
GGCAAGGTAGAGGCCGAGGGTGACAAGGCAGCCGAGGCGGCAGGAGAAAG
TGTGGCGGCGGACGGTGCACCGGCTCCAGAAGGCGCCGCGGCAGTGCATG
AGGAGAAAAAGGAGGAGAAGCCTGCCCAGGCCGAGCCTGCGACGCCTGCT
GCGGGGACGAAGAAGAAGTTTAAAACGCACTCGTTGTCCGTGGTGACCGT
GGCTCCGGGTTTGAGCAAGGCGGAGAAGGATGCGTTTGTGGAGGCAGAGG
CGCAGATGGAACAGCAGGATAGGATTATTCGGGAGACGGCGGATACGCGC
AATGCCTTGGAATCTTATATTTACGATTTGAAGGCCAAGTTGGGGGATAA
GCTCAAGCCGTTCGCTGAAGAATCGGCGGCCGCCGCATTTAATACACAAT
TGGAGGACATGGAGACCTGGTTATATGGCGATGAAGGCTTTGATTCTACC
AAATCCGTGTACGCTAGCAAGTTGGCTACGCTCCGGTCGGTGGGCGACCC
TATTCAGCAGCGCTCGGACGAGGCCAGCAAGCGTGAGCCGGCCCGTGTCG
AGTTCTGCCGTCAGTTGGAGGAGTACAAGACGCTAGTGAAGTCAGCGGAA
GAGAAGTACAGCCACATAACGGACGAGGAGCGCAATAAGGTTCGCGAGGA
AGTGACGGCCGCCGAATCCTGGCTCTACGACCAGCTCGCCAAGCAAACAG
AGCTACCCTCTTATGCCGACCCCGTTCTAACGGTGGCCGCCATCAAGGAG
CGACAAAATGCGGTGGCTCACGCTGTATTGCCGGTCATGAATCGGCCCAA
GCCTCCTCCTCAGGCCCCGGCACCCACGCCTGCTGTTGACGAGAAGGCGG
CCGCCCCACAGCCAGAAGAAGAGGTTGCCGAGGCACCAGCTGCCGAGACG
GGAGCGACAGAAGCGACGTCCATGGACGAAGGTGTGGCTCCTACAGCGGA
GGGGGAAGAAGAGGTGCCGATGGATACAGCTTCGTAA back to top
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