jgi.p|Nanoce1779_2|248799, mRNA_8989 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|248799
Unique NamemRNA_8989
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1082
Alignment locationscaffold_30:106085..107166 +

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Properties
Property NameValue
TranscriptId248885
TrackFilteredModels2
ProteinId248799
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:106085..107166 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|248799gene_8989Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|248799mRNA_8989-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8989CDS_8989Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8989 ID=mRNA_8989|Name=jgi.p|Nanoce1779_2|248799|organism=Nannochloropsis oceanica|type=mRNA|length=1082bp
CGAACTGTCGTGGTACTTGCCTCTAGAAGCAAGAAGTCCAAACGTTAGCC
TGACGTCAACGTCGAGAGCGGCGAGAAAAGCCAGAGGGGCGGGCAGCCGA
ACGCACAGCTGACCGGCAGGTCACCTTTCCACCAAAAATGTCCAAGCTCT
CCCTGGCCTGAACCGACTGCAGAGCGAGGCTTACGACGCCGTAGCCGAGG
CTATTGCTCGTTCCCCGCACACGTCGCAACAAGTCGACGCATTTGCTCAG
GCTCGCCCCCCATTCGGAATGTTTCTCATTTGCAGCCTAGGGGGATGTGG
CAAGACGCACCTAAATCAAGGGCTCATGAACCGGATCAGGTCCCAATGCG
CCATCACTCTTGACATGGCCGCCTCAGTCATCGCGGCGTTCCTTTTGGAG
GGCGGGGCCACATTCCACTCCAGTTGCAAGCTCGCACGGGACATTGCCAC
AGGGCAACCGTGCGGTGTCACACCCAACAATGACAGGGGTCGCATATTCC
TCGCCACCCGCTTCATCCTCATTGACGTGATCTACATACTGCACCGGGAC
AACCTCGAGGCCCTCGACAAAGCACAACGGGACCTTACGGCTTATAAGGT
ACACCTGGACCTTGCACATGTTCTCTTTGGGGAGAAGGTCGTCGTTCTTT
CGCAGATCTCCTTCAAATCCTCCCAGTGGTCCGAGACGACGACCAAAATG
CTACCGTGTGCGCTTTCCTCATTTGCAGTCCTTTCTTGCAAAGTGTCCGT
GCCCTTACCCTGGAGGAAAGCATGTGTATTTGTGCGGCGCACGACGCGGA
CCAGGATCCCACCCTCCTCCGATGGTTTGCAGACCTCCTCCTCGCGGTAA
GGGAAGGACAAGCAGCCCCACCCCCTCCAACTTTAGGCACCCCCAATGCC
ACCCCCTCCACCCCAGTCGGAAATCCTCCTGCCCCCCTTCATGCACCCTC
CGCCAGAGCTAAACTACAACCCATTTGGCTCCTCGACCACGTCTACGGGG
ATTTCAATGACGCGCGCAATACAACGGAGAAGACTCTAAGTGATTGTGCC
ATCCTCACCTTCAAGAACAAGGATGTAGAGGC
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protein sequence of jgi.p|Nanoce1779_2|248799

>mRNA_8989-protein ID=mRNA_8989-protein|Name=jgi.p|Nanoce1779_2|248799|organism=Nannochloropsis oceanica|type=polypeptide|length=194bp
MFLICSLGGCGKTHLNQGLMNRIRSQCAITLDMAASVIAAFLLEGGATFH
SSCKLARDIATGQPCGVTPNNDRGRIFLATRFILIDVIYILHRDNLEALD
KAQRDLTAYKVHLDLAHVLFGEKVVVLSQISFKSSQWSETTTKMLPCALS
SFAVLSCKVSVPLPWRKACVFVRRTTRTRIPPSSDGLQTSSSR*
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mRNA from alignment at scaffold_30:106085..107166+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8989 ID=mRNA_8989|Name=jgi.p|Nanoce1779_2|248799|organism=Nannochloropsis oceanica|type=mRNA|length=1082bp|location=Sequence derived from alignment at scaffold_30:106085..107166+ (Nannochloropsis oceanica)
CGAACTGTCGTGGTACTTGCCTCTAGAAGCAAGAAGTCCAAACGTTAGCC
TGACGTCAACGTCGAGAGCGGCGAGAAAAGCCAGAGGGGCGGGCAGCCGA
ACGCACAGCTGACCGGCAGGTCACCTTTCCACCAAAAATGTCCAAGCTCT
CCCTGGCCTGAACCGACTGCAGAGCGAGGCTTACGACGCCGTAGCCGAGG
CTATTGCTCGTTCCCCGCACACGTCGCAACAAGTCGACGCATTTGCTCAG
GCTCGCCCCCCATTCGGAATGTTTCTCATTTGCAGCCTAGGGGGATGTGG
CAAGACGCACCTAAATCAAGGGCTCATGAACCGGATCAGGTCCCAATGCG
CCATCACTCTTGACATGGCCGCCTCAGTCATCGCGGCGTTCCTTTTGGAG
GGCGGGGCCACATTCCACTCCAGTTGCAAGCTCGCACGGGACATTGCCAC
AGGGCAACCGTGCGGTGTCACACCCAACAATGACAGGGGTCGCATATTCC
TCGCCACCCGCTTCATCCTCATTGACGTGATCTACATACTGCACCGGGAC
AACCTCGAGGCCCTCGACAAAGCACAACGGGACCTTACGGCTTATAAGGT
ACACCTGGACCTTGCACATGTTCTCTTTGGGGAGAAGGTCGTCGTTCTTT
CGCAGATCTCCTTCAAATCCTCCCAGTGGTCCGAGACGACGACCAAAATG
CTACCGTGTGCGCTTTCCTCATTTGCAGTCCTTTCTTGCAAAGTGTCCGT
GCCCTTACCCTGGAGGAAAGCATGTGTATTTGTGCGGCGCACGACGCGGA
CCAGGATCCCACCCTCCTCCGATGGTTTGCAGACCTCCTCCTCGCGGTAA
GGGAAGGACAAGCAGCCCCACCCCCTCCAACTTTAGGCACCCCCAATGCC
ACCCCCTCCACCCCAGTCGGAAATCCTCCTGCCCCCCTTCATGCACCCTC
CGCCAGAGCTAAACTACAACCCATTTGGCTCCTCGACCACGTCTACGGGG
ATTTCAATGACGCGCGCAATACAACGGAGAAGACTCTAAGTGATTGTGCC
ATCCTCACCTTCAAGAACAAGGATGTAGAGGC
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Coding sequence (CDS) from alignment at scaffold_30:106085..107166+

>mRNA_8989 ID=mRNA_8989|Name=jgi.p|Nanoce1779_2|248799|organism=Nannochloropsis oceanica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_30:106085..107166+ (Nannochloropsis oceanica)
ATGTTTCTCATTTGCAGCCTAGGGGGATGTGGCAAGACGCACCTAAATCA
AGGGCTCATGAACCGGATCAGGTCCCAATGCGCCATCACTCTTGACATGG
CCGCCTCAGTCATCGCGGCGTTCCTTTTGGAGGGCGGGGCCACATTCCAC
TCCAGTTGCAAGCTCGCACGGGACATTGCCACAGGGCAACCGTGCGGTGT
CACACCCAACAATGACAGGGGTCGCATATTCCTCGCCACCCGCTTCATCC
TCATTGACGTGATCTACATACTGCACCGGGACAACCTCGAGGCCCTCGAC
AAAGCACAACGGGACCTTACGGCTTATAAGGTACACCTGGACCTTGCACA
TGTTCTCTTTGGGGAGAAGGTCGTCGTTCTTTCGCAGATCTCCTTCAAAT
CCTCCCAGTGGTCCGAGACGACGACCAAAATGCTACCGTGTGCGCTTTCC
TCATTTGCAGTCCTTTCTTGCAAAGTGTCCGTGCCCTTACCCTGGAGGAA
AGCATGTGTATTTGTGCGGCGCACGACGCGGACCAGGATCCCACCCTCCT
CCGATGGTTTGCAGACCTCCTCCTCGCGGTAA
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Synonyms
Publications