jgi.p|Nanoce1779_2|568914, mRNA_8988 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|568914
Unique NamemRNA_8988
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length336
Alignment locationscaffold_30:104964..105299 -

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Properties
Property NameValue
TranscriptId569000
TrackFilteredModels2
ProteinId568914
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:104964..105299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568914gene_8988Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8988CDS_8988Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|568914mRNA_8988-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8988 ID=mRNA_8988|Name=jgi.p|Nanoce1779_2|568914|organism=Nannochloropsis oceanica|type=mRNA|length=336bp
ATGTTTGTCCAATGCAAGGTGCTCATCAAGGGCTATATCGCCCCGCGGGG
CTCGGATGAGGGGTTTGGTCCAGCATGTTGTCTGACCGCCTGCCTTCAAA
CCGCTTGGGCCGGACGCAACGACAGATCCTACAACGGCACACTTGCCAAC
ATGCAGAACGACGACTTCAGGCCCCGCCTCGTCTGCTTGGACATGGTGAA
GTGCTTGATAAAGCACCACACGGCTGCCATGATCACCGAGATGCTGGCCA
AGACAATTGAACACTTCAATATTCCTCATGCCGCTATCTTCGGCACGGTC
CTAGACACTCGGTCGAATGTAAAGGAAGGTGCATGA
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protein sequence of jgi.p|Nanoce1779_2|568914

>mRNA_8988-protein ID=mRNA_8988-protein|Name=jgi.p|Nanoce1779_2|568914|organism=Nannochloropsis oceanica|type=polypeptide|length=112bp
MFVQCKVLIKGYIAPRGSDEGFGPACCLTACLQTAWAGRNDRSYNGTLAN
MQNDDFRPRLVCLDMVKCLIKHHTAAMITEMLAKTIEHFNIPHAAIFGTV
LDTRSNVKEGA*
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mRNA from alignment at scaffold_30:104964..105299-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8988 ID=mRNA_8988|Name=jgi.p|Nanoce1779_2|568914|organism=Nannochloropsis oceanica|type=mRNA|length=336bp|location=Sequence derived from alignment at scaffold_30:104964..105299- (Nannochloropsis oceanica)
ATGTTTGTCCAATGCAAGGTGCTCATCAAGGGCTATATCGCCCCGCGGGG
CTCGGATGAGGGGTTTGGTCCAGCATGTTGTCTGACCGCCTGCCTTCAAA
CCGCTTGGGCCGGACGCAACGACAGATCCTACAACGGCACACTTGCCAAC
ATGCAGAACGACGACTTCAGGCCCCGCCTCGTCTGCTTGGACATGGTGAA
GTGCTTGATAAAGCACCACACGGCTGCCATGATCACCGAGATGCTGGCCA
AGACAATTGAACACTTCAATATTCCTCATGCCGCTATCTTCGGCACGGTC
CTAGACACTCGGTCGAATGTAAAGGAAGGTGCATGA
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Coding sequence (CDS) from alignment at scaffold_30:104964..105299-

>mRNA_8988 ID=mRNA_8988|Name=jgi.p|Nanoce1779_2|568914|organism=Nannochloropsis oceanica|type=CDS|length=336bp|location=Sequence derived from alignment at scaffold_30:104964..105299- (Nannochloropsis oceanica)
ATGTTTGTCCAATGCAAGGTGCTCATCAAGGGCTATATCGCCCCGCGGGG
CTCGGATGAGGGGTTTGGTCCAGCATGTTGTCTGACCGCCTGCCTTCAAA
CCGCTTGGGCCGGACGCAACGACAGATCCTACAACGGCACACTTGCCAAC
ATGCAGAACGACGACTTCAGGCCCCGCCTCGTCTGCTTGGACATGGTGAA
GTGCTTGATAAAGCACCACACGGCTGCCATGATCACCGAGATGCTGGCCA
AGACAATTGAACACTTCAATATTCCTCATGCCGCTATCTTCGGCACGGTC
CTAGACACTCGGTCGAATGTAAAGGAAGGTGCATGA
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Synonyms
Publications