jgi.p|Nanoce1779_2|604783, mRNA_8987 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604783
Unique NamemRNA_8987
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2631
Alignment locationscaffold_30:103412..106042 -

Link to JBrowse

Properties
Property NameValue
TranscriptId604869
TrackFilteredModels2
ProteinId604783
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:103412..106042 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604783gene_8987Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604783mRNA_8987-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8987CDS_8987Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8987 ID=mRNA_8987|Name=jgi.p|Nanoce1779_2|604783|organism=Nannochloropsis oceanica|type=mRNA|length=2631bp
ACAGGCTTACGGGATGTCTAAATTGTCGTCGGAAGAAGGCTCTAGTGCCT
CGTCCACTACAAGGAATGCTGCCAGGAGCCTGCCAGTGGCTGCTCTGGAG
GCAGATGCGGAGGAGCGGGCCAAGCGCGCCCAGATCTCAACCTGTACACC
ACAGCCCAACGGGTGGAGTAGGAGATTTTTTTTGTGTGGCGCTCCCCCCT
CCTGTTCAAGCCCTTCAATAACGATAAAGGGGTGGCTATTACTGTGTGGG
CTGCAACGAGTGGAAGAGAGGAAACTCCTTGCAGGCGGACGACCACCTGA
GGAATCGCTATCCAGACGAATGGACTCGCGTCAAACGCCTCTCTAACGCA
GAGGCGAGTGATATCGTGTAGGCCTCGTCTTCTAGATCGAAGGTGCAGAC
CAAACTTCACCACCATCAATACTGGTGGGGCCAGGCCCTCCAACACGTGC
ACAATTACCTTAAAGGCAGACCAAAGGCATTCGAGCTCATTTCCTTGGTG
CACGAGGTGATTTTACGGGAGCATAGCCACGAAAGATTTTGGAGGTATTC
AAAGCACTTGAGAGACCTGGCCCGTTCAAGGAGACGGCCCCTAGTGCTCG
ACATTTTGTTGGATGCCAGGTTTGCCCGCAGCCTCCGACCCTTTAACCTC
GGCAACGACCAAGCGTTTGAGTATTTTGTGTCGACCATCGCCCCCCGAAA
TAGGCTGCCGACAACCCAGACTGTACGCAAGCATGTGGGGGTAATGTTTG
TCCAATGCAAGGTGCTCATCAAGGGCTATATCGCCCCGCGGGGCTCGGAT
GAGGGGTTTGGTCCAGCATGTTGTCTGACCGCCTGCCTTCAAACCGCTTG
GGCCGGACGCAACGACAGATCCTACAACGGCACACTTGCCAACATGCAGA
ACGACGACTTCAGGCCCCGCCTCGTCTGCTTGGACATGGTGAAGTGCTTG
ATAAAGCACCACACGGCTGCCATGATCACCGAGATGCTGGCCAAGACAAT
TGAACACTTCAATATTCCTCATGCCGCTATCTTCGGCACGGTCCTAGACA
CTCGGTCGAATGTAAAGGAAGGTGCATGAGCGCCATTTTTTTAAAATATT
TTTTTTATTGCGATTTGATTTGATCTATTCATTCATTTACTTATCGATCG
AAAGACACGTATACGTGTGTGTCTTTCCAAGATGTTTTGATTAAAGAAGG
GCACTTCCCCATTGCTTCTGTCCTTGCATGATCATGCATGATTCCTGCTG
AGCCAGTTGGATGGATCTCTTCGATATGCGTGACAAACATTATATTTAAC
TTTGTTCCACATACATATTTTCCAGGCGTGCTAGACGTTGGTCTCAAGTC
CTCCTCATGTTCTACAAATGCCTTACAGCGGACCGTCATCAACTCCCTGA
ACGCTGCCTTTAACATTAAGATTATGCTGAGCAGGATGAAGTCAGCTGTG
GCCATCATGCGCATGAGCCACTCCCAAACGGCTTACCTTAGGGAGGCACA
GCGGGCAGCAGGCATGTTTGATCACCAGCTCATTCAGTCTATGCAACACG
GTGGAGCTCAGTCGCTTTGCCATCGAGGGCCTGCTAGAGCAGCGGCTCAC
AATCGATCCAGACGCCTTCAGTGCCCTGCGCAATCTACTCGCCATGCTCG
ATCTCTCTCGATTCTAAAGGCGGAGTTTGGCACAGCCAGGAAGGTGGTGT
CTGCCATCTTCAAGCTTAAAACACTCATGGCTGCTGAGAGGGTCGTTCTT
GCCACCTGTGTCAGGGCCAGACCATCCTGGGTCCAGTGCCGAGGTTGTTG
CTACGGACCTCTACAGCGGTGTCCAGAAAGTCCGCCAGCATATGTCAAAG
ACTCGTTCCGGGTGTTTCTCATACCTCTGTGGATCAACGCTCTGTATAAA
CTCCATTAGGCTTAGATTGAAGCCAATTTCACATGGCTTTAAATCGGTAA
GCTTCTCTTCTCATAGGGATACCCTTTCTCCGTCAGAAGCCCTCTTAGAT
CCCTAAACCAATAAAAAGCGCGAAGCGCGTATGAAAAACAAAAACACCAC
AATAACATAAACCGGGTTAGGGTTAGGGTTAGTTTATGTCTTTTACCGTG
GTTCGTTCTTCTACGGAAACAACTCAATCGCTTTTTACTCGTTTAATTAA
CCCTAAACCTCGTAATCAAAGGGGGCTTGAGCAGACGGCGCGATGGAAGG
AGCAAGGGAAGAAGTCAAAAATGAGAGCATGACGTCACAGATGGAGCAAA
CATTTTTGGTGATCGTATGCCTCCCTATAACAGCCGCATGGTCAACGAGC
GGCCCATATGGGCCGGGATGTACTAACCTACTATGCATGTTACAAGTGCG
CACTGTGCATTGCGTACTTGTGACAGTGGAAGAAGTCTTTCGGAGTCCTC
AACCCCCGAGATGGTTCAATCGCATAAAAACAGAGCAACTGTGCCCATGG
GGGGGAGGGAGCCCTCCCCGAAGATACGCTCCACACGTCGGACAACTGCG
ATGTTGTGATAACTAACCTGATCTTGTGCAGAACTTTCTGTTGTCGAACT
TTCAGTTGTTGGGGAGCACGAAAATGCACGTTGTGTTTACTTTGAGTGGT
GAGGAGGGAAGGGCGAGAAAGTGGAAGGAGT
back to top

protein sequence of jgi.p|Nanoce1779_2|604783

>mRNA_8987-protein ID=mRNA_8987-protein|Name=jgi.p|Nanoce1779_2|604783|organism=Nannochloropsis oceanica|type=polypeptide|length=224bp
MIPAEPVGWISSICVTNIIFNFVPHTYFPGVLDVGLKSSSCSTNALQRTV
INSLNAAFNIKIMLSRMKSAVAIMRMSHSQTAYLREAQRAAGMFDHQLIQ
SMQHGGAQSLCHRGPARAAAHNRSRRLQCPAQSTRHARSLSILKAEFGTA
RKVVSAIFKLKTLMAAERVVLATCVRARPSWVQCRGCCYGPLQRCPESPP
AYVKDSFRVFLIPLWINALYKLH*
back to top

mRNA from alignment at scaffold_30:103412..106042-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8987 ID=mRNA_8987|Name=jgi.p|Nanoce1779_2|604783|organism=Nannochloropsis oceanica|type=mRNA|length=2631bp|location=Sequence derived from alignment at scaffold_30:103412..106042- (Nannochloropsis oceanica)
ACAGGCTTACGGGATGTCTAAATTGTCGTCGGAAGAAGGCTCTAGTGCCT
CGTCCACTACAAGGAATGCTGCCAGGAGCCTGCCAGTGGCTGCTCTGGAG
GCAGATGCGGAGGAGCGGGCCAAGCGCGCCCAGATCTCAACCTGTACACC
ACAGCCCAACGGGTGGAGTAGGAGATTTTTTTTGTGTGGCGCTCCCCCCT
CCTGTTCAAGCCCTTCAATAACGATAAAGGGGTGGCTATTACTGTGTGGG
CTGCAACGAGTGGAAGAGAGGAAACTCCTTGCAGGCGGACGACCACCTGA
GGAATCGCTATCCAGACGAATGGACTCGCGTCAAACGCCTCTCTAACGCA
GAGGCGAGTGATATCGTGTAGGCCTCGTCTTCTAGATCGAAGGTGCAGAC
CAAACTTCACCACCATCAATACTGGTGGGGCCAGGCCCTCCAACACGTGC
ACAATTACCTTAAAGGCAGACCAAAGGCATTCGAGCTCATTTCCTTGGTG
CACGAGGTGATTTTACGGGAGCATAGCCACGAAAGATTTTGGAGGTATTC
AAAGCACTTGAGAGACCTGGCCCGTTCAAGGAGACGGCCCCTAGTGCTCG
ACATTTTGTTGGATGCCAGGTTTGCCCGCAGCCTCCGACCCTTTAACCTC
GGCAACGACCAAGCGTTTGAGTATTTTGTGTCGACCATCGCCCCCCGAAA
TAGGCTGCCGACAACCCAGACTGTACGCAAGCATGTGGGGGTAATGTTTG
TCCAATGCAAGGTGCTCATCAAGGGCTATATCGCCCCGCGGGGCTCGGAT
GAGGGGTTTGGTCCAGCATGTTGTCTGACCGCCTGCCTTCAAACCGCTTG
GGCCGGACGCAACGACAGATCCTACAACGGCACACTTGCCAACATGCAGA
ACGACGACTTCAGGCCCCGCCTCGTCTGCTTGGACATGGTGAAGTGCTTG
ATAAAGCACCACACGGCTGCCATGATCACCGAGATGCTGGCCAAGACAAT
TGAACACTTCAATATTCCTCATGCCGCTATCTTCGGCACGGTCCTAGACA
CTCGGTCGAATGTAAAGGAAGGTGCATGAGCGCCATTTTTTTAAAATATT
TTTTTTATTGCGATTTGATTTGATCTATTCATTCATTTACTTATCGATCG
AAAGACACGTATACGTGTGTGTCTTTCCAAGATGTTTTGATTAAAGAAGG
GCACTTCCCCATTGCTTCTGTCCTTGCATGATCATGCATGATTCCTGCTG
AGCCAGTTGGATGGATCTCTTCGATATGCGTGACAAACATTATATTTAAC
TTTGTTCCACATACATATTTTCCAGGCGTGCTAGACGTTGGTCTCAAGTC
CTCCTCATGTTCTACAAATGCCTTACAGCGGACCGTCATCAACTCCCTGA
ACGCTGCCTTTAACATTAAGATTATGCTGAGCAGGATGAAGTCAGCTGTG
GCCATCATGCGCATGAGCCACTCCCAAACGGCTTACCTTAGGGAGGCACA
GCGGGCAGCAGGCATGTTTGATCACCAGCTCATTCAGTCTATGCAACACG
GTGGAGCTCAGTCGCTTTGCCATCGAGGGCCTGCTAGAGCAGCGGCTCAC
AATCGATCCAGACGCCTTCAGTGCCCTGCGCAATCTACTCGCCATGCTCG
ATCTCTCTCGATTCTAAAGGCGGAGTTTGGCACAGCCAGGAAGGTGGTGT
CTGCCATCTTCAAGCTTAAAACACTCATGGCTGCTGAGAGGGTCGTTCTT
GCCACCTGTGTCAGGGCCAGACCATCCTGGGTCCAGTGCCGAGGTTGTTG
CTACGGACCTCTACAGCGGTGTCCAGAAAGTCCGCCAGCATATGTCAAAG
ACTCGTTCCGGGTGTTTCTCATACCTCTGTGGATCAACGCTCTGTATAAA
CTCCATTAGGCTTAGATTGAAGCCAATTTCACATGGCTTTAAATCGGTAA
GCTTCTCTTCTCATAGGGATACCCTTTCTCCGTCAGAAGCCCTCTTAGAT
CCCTAAACCAATAAAAAGCGCGAAGCGCGTATGAAAAACAAAAACACCAC
AATAACATAAACCGGGTTAGGGTTAGGGTTAGTTTATGTCTTTTACCGTG
GTTCGTTCTTCTACGGAAACAACTCAATCGCTTTTTACTCGTTTAATTAA
CCCTAAACCTCGTAATCAAAGGGGGCTTGAGCAGACGGCGCGATGGAAGG
AGCAAGGGAAGAAGTCAAAAATGAGAGCATGACGTCACAGATGGAGCAAA
CATTTTTGGTGATCGTATGCCTCCCTATAACAGCCGCATGGTCAACGAGC
GGCCCATATGGGCCGGGATGTACTAACCTACTATGCATGTTACAAGTGCG
CACTGTGCATTGCGTACTTGTGACAGTGGAAGAAGTCTTTCGGAGTCCTC
AACCCCCGAGATGGTTCAATCGCATAAAAACAGAGCAACTGTGCCCATGG
GGGGGAGGGAGCCCTCCCCGAAGATACGCTCCACACGTCGGACAACTGCG
ATGTTGTGATAACTAACCTGATCTTGTGCAGAACTTTCTGTTGTCGAACT
TTCAGTTGTTGGGGAGCACGAAAATGCACGTTGTGTTTACTTTGAGTGGT
GAGGAGGGAAGGGCGAGAAAGTGGAAGGAGT
back to top

Coding sequence (CDS) from alignment at scaffold_30:103412..106042-

>mRNA_8987 ID=mRNA_8987|Name=jgi.p|Nanoce1779_2|604783|organism=Nannochloropsis oceanica|type=CDS|length=672bp|location=Sequence derived from alignment at scaffold_30:103412..106042- (Nannochloropsis oceanica)
ATGATTCCTGCTGAGCCAGTTGGATGGATCTCTTCGATATGCGTGACAAA
CATTATATTTAACTTTGTTCCACATACATATTTTCCAGGCGTGCTAGACG
TTGGTCTCAAGTCCTCCTCATGTTCTACAAATGCCTTACAGCGGACCGTC
ATCAACTCCCTGAACGCTGCCTTTAACATTAAGATTATGCTGAGCAGGAT
GAAGTCAGCTGTGGCCATCATGCGCATGAGCCACTCCCAAACGGCTTACC
TTAGGGAGGCACAGCGGGCAGCAGGCATGTTTGATCACCAGCTCATTCAG
TCTATGCAACACGGTGGAGCTCAGTCGCTTTGCCATCGAGGGCCTGCTAG
AGCAGCGGCTCACAATCGATCCAGACGCCTTCAGTGCCCTGCGCAATCTA
CTCGCCATGCTCGATCTCTCTCGATTCTAAAGGCGGAGTTTGGCACAGCC
AGGAAGGTGGTGTCTGCCATCTTCAAGCTTAAAACACTCATGGCTGCTGA
GAGGGTCGTTCTTGCCACCTGTGTCAGGGCCAGACCATCCTGGGTCCAGT
GCCGAGGTTGTTGCTACGGACCTCTACAGCGGTGTCCAGAAAGTCCGCCA
GCATATGTCAAAGACTCGTTCCGGGTGTTTCTCATACCTCTGTGGATCAA
CGCTCTGTATAAACTCCATTAG
back to top
Synonyms
Publications