jgi.p|Nanoce1779_2|604781, mRNA_8986 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604781
Unique NamemRNA_8986
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length583
Alignment locationscaffold_30:102849..103431 +

Link to JBrowse

Properties
Property NameValue
TranscriptId604867
TrackFilteredModels2
ProteinId604781
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:102849..103431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604781gene_8986Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604781mRNA_8986-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8986CDS_8986Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8986 ID=mRNA_8986|Name=jgi.p|Nanoce1779_2|604781|organism=Nannochloropsis oceanica|type=mRNA|length=583bp
TGCACAAGTTGAGCACAGAACTCAACGCATTGCTGTACGGCATCATAACA
AGTGGGGCGGCATGTGGTGTGTGTTGTGTGTATTAGTGTGCCCCTGGGTG
GTGGCAGCGTGGCTGACTGCGCAACAAGAATGCATGCAAGCGAATGGAGA
ATCATCACCCTCGGGTCTTGAGCAGGGCTTTGAGCGAGCGGGTGTACTGA
CGACTTTGAAATTCATGCATCAGTCATCTGCATCAGCCTTTCAGTGGCCA
ATGCCAGATGCCAGATGGACAAACAGCGCAGGCAGACAAAGAAAAGGAAT
ATGGTAAGGTTGATTCTAGAGAATTAGGTGGTGGCTCGCTGGTACCTCAC
AATCTCTCTCACACTGCCAATAGAAGATAAATCCCGGGCTTTTACGTGCC
AACAATACATGCGCCTAAAAGTCCTCTATGAGAGTTTCACCCTTCTTTCA
ATCTCGAGCAATCATAATCTTCTGCTCGTCGTTGCTTTCAGTGGATTTAA
TCAATCATAATCCTCTCCGTGTCGTTGATTTTCAATTCCTAAGGCAGCGA
ATTCAAAGCCTTCACTCCTTCCACTTTCTCGCC
back to top

protein sequence of jgi.p|Nanoce1779_2|604781

>mRNA_8986-protein ID=mRNA_8986-protein|Name=jgi.p|Nanoce1779_2|604781|organism=Nannochloropsis oceanica|type=polypeptide|length=82bp
MWCVLCVLVCPWVVAAWLTAQQECMQANGESSPSGLEQGFERAGVLTTLK
FMHQSSASAFQWPMPDARWTNSAGRQRKGIW*
back to top

mRNA from alignment at scaffold_30:102849..103431+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8986 ID=mRNA_8986|Name=jgi.p|Nanoce1779_2|604781|organism=Nannochloropsis oceanica|type=mRNA|length=583bp|location=Sequence derived from alignment at scaffold_30:102849..103431+ (Nannochloropsis oceanica)
TGCACAAGTTGAGCACAGAACTCAACGCATTGCTGTACGGCATCATAACA
AGTGGGGCGGCATGTGGTGTGTGTTGTGTGTATTAGTGTGCCCCTGGGTG
GTGGCAGCGTGGCTGACTGCGCAACAAGAATGCATGCAAGCGAATGGAGA
ATCATCACCCTCGGGTCTTGAGCAGGGCTTTGAGCGAGCGGGTGTACTGA
CGACTTTGAAATTCATGCATCAGTCATCTGCATCAGCCTTTCAGTGGCCA
ATGCCAGATGCCAGATGGACAAACAGCGCAGGCAGACAAAGAAAAGGAAT
ATGGTAAGGTTGATTCTAGAGAATTAGGTGGTGGCTCGCTGGTACCTCAC
AATCTCTCTCACACTGCCAATAGAAGATAAATCCCGGGCTTTTACGTGCC
AACAATACATGCGCCTAAAAGTCCTCTATGAGAGTTTCACCCTTCTTTCA
ATCTCGAGCAATCATAATCTTCTGCTCGTCGTTGCTTTCAGTGGATTTAA
TCAATCATAATCCTCTCCGTGTCGTTGATTTTCAATTCCTAAGGCAGCGA
ATTCAAAGCCTTCACTCCTTCCACTTTCTCGCC
back to top

Coding sequence (CDS) from alignment at scaffold_30:102849..103431+

>mRNA_8986 ID=mRNA_8986|Name=jgi.p|Nanoce1779_2|604781|organism=Nannochloropsis oceanica|type=CDS|length=246bp|location=Sequence derived from alignment at scaffold_30:102849..103431+ (Nannochloropsis oceanica)
ATGTGGTGTGTGTTGTGTGTATTAGTGTGCCCCTGGGTGGTGGCAGCGTG
GCTGACTGCGCAACAAGAATGCATGCAAGCGAATGGAGAATCATCACCCT
CGGGTCTTGAGCAGGGCTTTGAGCGAGCGGGTGTACTGACGACTTTGAAA
TTCATGCATCAGTCATCTGCATCAGCCTTTCAGTGGCCAATGCCAGATGC
CAGATGGACAAACAGCGCAGGCAGACAAAGAAAAGGAATATGGTAA
back to top
Synonyms
Publications