jgi.p|Nanoce1779_2|248682, mRNA_8985 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|248682
Unique NamemRNA_8985
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length630
Alignment locationscaffold_30:101395..102646 -

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Properties
Property NameValue
TranscriptId248768
TrackFilteredModels2
ProteinId248682
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:101395..102646 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|248682gene_8985Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|248682mRNA_8985-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8985CDS_8985Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8985 ID=mRNA_8985|Name=jgi.p|Nanoce1779_2|248682|organism=Nannochloropsis oceanica|type=mRNA|length=630bp
CCCTCCCTCGCTCCTTTCCTCACTCCCTGATTAGATGGACCCTTTGCGTC
CTGGACCCGGGGGGAGCACCAGCAGCGGCACTATCTCCCTAGGCGTCTCA
GAAGCTCGCTTTCCCCCTACCTACGGTTCTGTGGACGACGGAGGCATCGG
CATGGTCAACAGAAGTGGATGGAGGGATGGGGGAAAGGAGAGCGGGTTTC
CGCCTTTGCGTCGATCGTACTCGCTGAGCGCGATTAGAGAGGGTGTACCA
ACCCTTGGTCGGCACGAGAACCTGGTAGCGGTCTGCTTGCTCATTATGGC
GTTGCTTTGCCTAGGCATCATCCTCTTTGTCCTGCGGCCTATTCTCATCC
CCTTCGCCGTCTCCCTCCTTTTCTACTACCTTCTCCAACCCGTCGTCAAC
ACCCTCAACAAATCACTCTTCCCATTCTTCCTCCCTCCTCCCCCTCCCCT
CAATCCCTCGTGCAGCCTCCTGCCATTTGCTGTCGGGAGTTGTATGTGGG
CTGTGCGGAACTAGGGGCCCCTGTGAGCGACGAAGGGGAAGGAAGCATGG
CTTCCTCTTCAATTGGGGGCAGGTTTCTCTCCCGAGCCGTCGGAGGGCTG
CGACGACGCGCCGGATACGATACCGTCGCC
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protein sequence of jgi.p|Nanoce1779_2|248682

>mRNA_8985-protein ID=mRNA_8985-protein|Name=jgi.p|Nanoce1779_2|248682|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MDPLRPGPGGSTSSGTISLGVSEARFPPTYGSVDDGGIGMVNRSGWRDGG
KESGFPPLRRSYSLSAIREGVPTLGRHENLVAVCLLIMALLCLGIILFVL
RPILIPFAVSLLFYYLLQPVVNTLNKSLFPFFLPPPPPLNPSCSLLPFAV
GSCMWAVRN*
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mRNA from alignment at scaffold_30:101395..102646-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8985 ID=mRNA_8985|Name=jgi.p|Nanoce1779_2|248682|organism=Nannochloropsis oceanica|type=mRNA|length=1252bp|location=Sequence derived from alignment at scaffold_30:101395..102646- (Nannochloropsis oceanica)
CCCTCCCTCGCTCCTTTCCTCACTCCCTGATTAGATGGACCCTTTGCGTC
CTGGACCCGGGGGGAGCACCAGCAGCGGCACTATCTCCCTAGGCGTCTCA
GAAGCTCGCTTTCCCCCTACCTACGGTTCTGTGGACGACGGAGGCATCGG
CATGGTCAACAGAAGTGGATGGAGGGATGGGGGAAAGGAGAGCGGGTTTC
CGCCTTTGCGTCGATCGTACTCGCTGAGCGCGATTAGAGAGGGTGTACCG
TAAGTAGATAGAAAGCGGGACGGGGACCATGGGAGGTTCTGAGGAGAGGA
GAAGGAACTTATGGAGCCCTGCCACAATTTTCGGGTCAGGCCACTCGAGC
AATTAGCGTCCGACTTTTTCTTCACCCAATCATCCTTTCTCGTTCCTTTC
CTCCCTTCATCCATACCAAAGAACCCTTGGTCGGCACGAGAACCTGGTAG
CGGTCTGCTTGCTCATTATGGCGTTGCTTTGCCTAGGTAGCGTTGATGGA
GAGGAAGAGGGAAGAAGGGGAGGGAGGGAGATGCCTCTGAGCTCGGAATG
GGAAGGGGTTGGCGCCTGTCTATAAGTTCAATCTATCTATCTATCTATCA
TACACACACCCCGCATATCAAATGCCATTAATCATACCCTCTTATCCTCG
GTCCCCAGGCATCATCCTCTTTGTCCTGCGGCCTATTCTCATCCCCTTCG
CCGTCTCCCTCCTTTTCTACTACCTTCTCCAACCCGTCGTCAACACCCTC
AACAAAGTGAGGACCGGAGGGAGGGAGGGAGATAGGGAGGGAGGGAGGAA
GGAAGGAAGGAAGGAAGGAGGGAAAGAAGGAAAAAGCATTAAGGTAACCT
ACAATCTCCTCCTGAGCACCTCATTTTCCTAGTCACTCTTCCCATTCTTC
CTCCCTCCTCCCCCTCCCCTCAATCCCTCGTGCAGCCTCCTGCCATTTGC
TGTCGGGAGTTGTATGTGGGCTGTGCGGAACTAGGGGCCCCTGTGAGCGA
CGAAGGGGAAGGAAGCATGGCTTCCTCTTCAATTGGGGGCAGGTTTCTCT
CCCGAGCCGTCGGAGGGCTGCGACGACGGTGGGGAGGGAGGGAGGGAGGG
AGGGAGGGAGGGAAGAAGAGGGTATCGTTACAAGCGGCATATCTCGTCTC
ATAACTTTATGATCCTTCCCTCCCTTCCTCTCCCCCTCCCTCCTTCCCTC
TCTCCCATGCTATCTTCCTCAATAACCCAGCGCCGGATACGATACCGTCG
CC
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Coding sequence (CDS) from alignment at scaffold_30:101395..102646-

>mRNA_8985 ID=mRNA_8985|Name=jgi.p|Nanoce1779_2|248682|organism=Nannochloropsis oceanica|type=CDS|length=1920bp|location=Sequence derived from alignment at scaffold_30:101395..102646- (Nannochloropsis oceanica)
TCACTCTTCCCATTCTTCCTCCCTCCTCCCCCTCCCCTCAATCCCTCGTG
CAGCCTCCTGCCATTTGCTGTCGGGAGTTGTATGTGGGCTGTGCGGAACT
AGGCATCATCCTCTTTGTCCTGCGGCCTATTCTCATCCCCTTCGCCGTCT
CCCTCCTTTTCTACTACCTTCTCCAACCCGTCGTCAACACCCTCAACAAA
AACCCTTGGTCGGCACGAGAACCTGGTAGCGGTCTGCTTGCTCATTATGG
CGTTGCTTTGCCTAGATGGACCCTTTGCGTCCTGGACCCGGGGGGAGCAC
CAGCAGCGGCACTATCTCCCTAGGCGTCTCAGAAGCTCGCTTTCCCCCTA
CCTACGGTTCTGTGGACGACGGAGGCATCGGCATGGTCAACAGAAGTGGA
TGGAGGGATGGGGGAAAGGAGAGCGGGTTTCCGCCTTTGCGTCGATCGTA
CTCGCTGAGCGCGATTAGAGAGGGTGTACCTCACTCTTCCCATTCTTCCT
CCCTCCTCCCCCTCCCCTCAATCCCTCGTGCAGCCTCCTGCCATTTGCTG
TCGGGAGTTGTATGTGGGCTGTGCGGAACTAGGCATCATCCTCTTTGTCC
TGCGGCCTATTCTCATCCCCTTCGCCGTCTCCCTCCTTTTCTACTACCTT
CTCCAACCCGTCGTCAACACCCTCAACAAAAACCCTTGGTCGGCACGAGA
ACCTGGTAGCGGTCTGCTTGCTCATTATGGCGTTGCTTTGCCTAGATGGA
CCCTTTGCGTCCTGGACCCGGGGGGAGCACCAGCAGCGGCACTATCTCCC
TAGGCGTCTCAGAAGCTCGCTTTCCCCCTACCTACGGTTCTGTGGACGAC
GGAGGCATCGGCATGGTCAACAGAAGTGGATGGAGGGATGGGGGAAAGGA
GAGCGGGTTTCCGCCTTTGCGTCGATCGTACTCGCTGAGCGCGATTAGAG
AGGGTGTACCTCACTCTTCCCATTCTTCCTCCCTCCTCCCCCTCCCCTCA
ATCCCTCGTGCAGCCTCCTGCCATTTGCTGTCGGGAGTTGTATGTGGGCT
GTGCGGAACTAGGCATCATCCTCTTTGTCCTGCGGCCTATTCTCATCCCC
TTCGCCGTCTCCCTCCTTTTCTACTACCTTCTCCAACCCGTCGTCAACAC
CCTCAACAAAAACCCTTGGTCGGCACGAGAACCTGGTAGCGGTCTGCTTG
CTCATTATGGCGTTGCTTTGCCTAGATGGACCCTTTGCGTCCTGGACCCG
GGGGGAGCACCAGCAGCGGCACTATCTCCCTAGGCGTCTCAGAAGCTCGC
TTTCCCCCTACCTACGGTTCTGTGGACGACGGAGGCATCGGCATGGTCAA
CAGAAGTGGATGGAGGGATGGGGGAAAGGAGAGCGGGTTTCCGCCTTTGC
GTCGATCGTACTCGCTGAGCGCGATTAGAGAGGGTGTACCTCACTCTTCC
CATTCTTCCTCCCTCCTCCCCCTCCCCTCAATCCCTCGTGCAGCCTCCTG
CCATTTGCTGTCGGGAGTTGTATGTGGGCTGTGCGGAACTAGGCATCATC
CTCTTTGTCCTGCGGCCTATTCTCATCCCCTTCGCCGTCTCCCTCCTTTT
CTACTACCTTCTCCAACCCGTCGTCAACACCCTCAACAAAAACCCTTGGT
CGGCACGAGAACCTGGTAGCGGTCTGCTTGCTCATTATGGCGTTGCTTTG
CCTAGATGGACCCTTTGCGTCCTGGACCCGGGGGGAGCACCAGCAGCGGC
ACTATCTCCCTAGGCGTCTCAGAAGCTCGCTTTCCCCCTACCTACGGTTC
TGTGGACGACGGAGGCATCGGCATGGTCAACAGAAGTGGATGGAGGGATG
GGGGAAAGGAGAGCGGGTTTCCGCCTTTGCGTCGATCGTACTCGCTGAGC
GCGATTAGAGAGGGTGTACC
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Synonyms
Publications