jgi.p|Nanoce1779_2|604775, mRNA_8983 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604775
Unique NamemRNA_8983
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length826
Alignment locationscaffold_30:97828..98653 +

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Properties
Property NameValue
TranscriptId604861
TrackFilteredModels2
ProteinId604775
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:97828..98653 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604775gene_8983Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604775mRNA_8983-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8983CDS_8983Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8983 ID=mRNA_8983|Name=jgi.p|Nanoce1779_2|604775|organism=Nannochloropsis oceanica|type=mRNA|length=826bp
GCGCCATTGGTCTTCCCTAAACTCCTTCGACTGGCACTTGACTCTTTGGC
CCCACCTGTTAGGAAGGGAAGATATGTATTAGCCTCACTCTCATCATGCA
GGCTCTTATTATGGATGGATTCACTGCATGGGTGCTCCCTTCTCTTACGC
TCTCTCTGCTCTATTCACAAGCAAACTTCGCTTGTCGGGCTCATCTCTCC
TTTCTCCCTCGCCATCATTCATCGCCGAAAAAGTGGCCCATGTCCCAGTC
GCCCATTGGACATATCTCTTGGCCGGTATCAACCCACCTGCCACTCCATT
TACCTCGATGCCGCTGGGGTGTGAAGTAGTATGATCTTTTTGATATGTCA
ACCCCACCCTGAACCTCCCCTCCCTCTTCCTGTCCTGCCCTCGGCTCGTG
TAAACGGAGCGTGAGAAAAAGCAACAGGGTTGGCAAATGAACGATTTGAT
CGCCTTCTAATTCTCAAATGTATTTAGAGTCCACCTGTCTGTTGTCTTAA
GGAGCCCAAAATTATGTCTACAAGCTTACATTGCAGACGACAGGAATGCA
CATACACTTATCTTCAGTCTTTTCATCTCTTTGTCTTCCTACACCTTGAA
TAAGTTCTAAAGTGCATGTTTATATGCTGCACCTATTCTCTCTCCCCCTC
CTCCTCCTCCCAAAAACGGCGCCGAGCACGCAGGCTGCACAGAAACAACT
TCCGATGCTGATCTTTGATGATGCCTGTAATGTCAGGACACGTGGAGAAA
GTGAGACCTATTCTGCTTTTTTCCCCCTTCCTTCGCTCCCCATCCTCCCT
CCCTCACTCACTCACTCACTCACTCA
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protein sequence of jgi.p|Nanoce1779_2|604775

>mRNA_8983-protein ID=mRNA_8983-protein|Name=jgi.p|Nanoce1779_2|604775|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MQALIMDGFTAWVLPSLTLSLLYSQANFACRAHLSFLPRHHSSPKKWPMS
QSPIGHISWPVSTHLPLHLPRCRWGVK*
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mRNA from alignment at scaffold_30:97828..98653+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8983 ID=mRNA_8983|Name=jgi.p|Nanoce1779_2|604775|organism=Nannochloropsis oceanica|type=mRNA|length=826bp|location=Sequence derived from alignment at scaffold_30:97828..98653+ (Nannochloropsis oceanica)
GCGCCATTGGTCTTCCCTAAACTCCTTCGACTGGCACTTGACTCTTTGGC
CCCACCTGTTAGGAAGGGAAGATATGTATTAGCCTCACTCTCATCATGCA
GGCTCTTATTATGGATGGATTCACTGCATGGGTGCTCCCTTCTCTTACGC
TCTCTCTGCTCTATTCACAAGCAAACTTCGCTTGTCGGGCTCATCTCTCC
TTTCTCCCTCGCCATCATTCATCGCCGAAAAAGTGGCCCATGTCCCAGTC
GCCCATTGGACATATCTCTTGGCCGGTATCAACCCACCTGCCACTCCATT
TACCTCGATGCCGCTGGGGTGTGAAGTAGTATGATCTTTTTGATATGTCA
ACCCCACCCTGAACCTCCCCTCCCTCTTCCTGTCCTGCCCTCGGCTCGTG
TAAACGGAGCGTGAGAAAAAGCAACAGGGTTGGCAAATGAACGATTTGAT
CGCCTTCTAATTCTCAAATGTATTTAGAGTCCACCTGTCTGTTGTCTTAA
GGAGCCCAAAATTATGTCTACAAGCTTACATTGCAGACGACAGGAATGCA
CATACACTTATCTTCAGTCTTTTCATCTCTTTGTCTTCCTACACCTTGAA
TAAGTTCTAAAGTGCATGTTTATATGCTGCACCTATTCTCTCTCCCCCTC
CTCCTCCTCCCAAAAACGGCGCCGAGCACGCAGGCTGCACAGAAACAACT
TCCGATGCTGATCTTTGATGATGCCTGTAATGTCAGGACACGTGGAGAAA
GTGAGACCTATTCTGCTTTTTTCCCCCTTCCTTCGCTCCCCATCCTCCCT
CCCTCACTCACTCACTCACTCACTCA
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Coding sequence (CDS) from alignment at scaffold_30:97828..98653+

>mRNA_8983 ID=mRNA_8983|Name=jgi.p|Nanoce1779_2|604775|organism=Nannochloropsis oceanica|type=CDS|length=234bp|location=Sequence derived from alignment at scaffold_30:97828..98653+ (Nannochloropsis oceanica)
ATGCAGGCTCTTATTATGGATGGATTCACTGCATGGGTGCTCCCTTCTCT
TACGCTCTCTCTGCTCTATTCACAAGCAAACTTCGCTTGTCGGGCTCATC
TCTCCTTTCTCCCTCGCCATCATTCATCGCCGAAAAAGTGGCCCATGTCC
CAGTCGCCCATTGGACATATCTCTTGGCCGGTATCAACCCACCTGCCACT
CCATTTACCTCGATGCCGCTGGGGTGTGAAGTAG
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Synonyms
Publications