jgi.p|Nanoce1779_2|248639, mRNA_8981 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|248639
Unique NamemRNA_8981
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length571
Alignment locationscaffold_30:93312..94097 -

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Properties
Property NameValue
TranscriptId248725
TrackFilteredModels2
ProteinId248639
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:93312..94097 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|248639gene_8981Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|248639mRNA_8981-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8981CDS_8981Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8981 ID=mRNA_8981|Name=jgi.p|Nanoce1779_2|248639|organism=Nannochloropsis oceanica|type=mRNA|length=571bp
GACAGAGACTTTCTACCATGGCCTAGCGCTGTAAAAAAGAGACCGCGGGG
CTCCTGCGAGGTATGCTATCAGCTCAAGACACAGTGCGACAAGACGTTCC
CTTGTGGAAGGTGCTATCGCCTAAACAAGCCCTGCCGTCCCCCCACAGAA
TCACTCGAGCTCCTCCACCACCCTGCCTCCTCCTCCTCCTCCTCCTCCTC
CTTCTCCTCCCCCTCCTCCCCCTCCTCCTCTCCTTCCTCATCCTCCCCCC
TCCTGGACCTGGTCATCGAACGCATCGACTTCAAACCCATGGTACATCTG
TATATGCAGGCCTTCCACGAGCTGAGGGAGGAGGGACTCGTGGATAGAAG
ACGGGCGATTGGCTTGTTAAGGATGTGGATGAACCTGGGCTTGCTCTTTG
GAGGCAACTCGGATCCGACGTTGGGCATGTTCTCACAGGTGAGTGAGTTA
TTTCTATATATATACATGCCTGCCTTCCTATTCCCTCCTTCTTCCCCTCC
TTCCGCAGGTCTGACACATAGACTCTCACTCTGTCCTTCCCTCTCTACCT
CCCTCCTTAGGTCCAGGACTC
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protein sequence of jgi.p|Nanoce1779_2|248639

>mRNA_8981-protein ID=mRNA_8981-protein|Name=jgi.p|Nanoce1779_2|248639|organism=Nannochloropsis oceanica|type=polypeptide|length=190bp
DRDFLPWPSAVKKRPRGSCEVCYQLKTQCDKTFPCGRCYRLNKPCRPPTE
SLELLHHPASSSSSSSSFSSPSSPSSSPSSSSPLLDLVIERIDFKPMVHL
YMQAFHELREEGLVDRRRAIGLLRMWMNLGLLFGGNSDPTLGMFSQVSEL
FLYIYMPAFLFPPSSPPSAGLTHRLSLCPSLSTSLLRSRT
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mRNA from alignment at scaffold_30:93312..94097-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8981 ID=mRNA_8981|Name=jgi.p|Nanoce1779_2|248639|organism=Nannochloropsis oceanica|type=mRNA|length=786bp|location=Sequence derived from alignment at scaffold_30:93312..94097- (Nannochloropsis oceanica)
GACAGAGACTTTCTACCATGGCCTAGCGCTGTAAAAAAGAGACCGCGGGG
CTCCTGCGAGGTATGCTATCAGCTCAAGACACAGTGCGACAAGACGTTCC
CTTGTGGAAGGTGCGTGCTTCACTAGGAGAGGGAAGGGGAAGAGGGCTGA
TATTTTCGTATCCAGCCGATTCAGCGATCCATAGGACCGTTCGAGGTCAC
CATCAACCATCGTACCCGTTCAAATAATAGTATAATAGTAATTATATCAA
TGCATGCATACGTACACACTTATATTCATACATCGTTAAATCTCAACATC
TTCTTCTCTTTATCCTCATCCCCAGGTGCTATCGCCTAAACAAGCCCTGC
CGTCCCCCCACAGAATCACTCGAGCTCCTCCACCACCCTGCCTCCTCCTC
CTCCTCCTCCTCCTCCTTCTCCTCCCCCTCCTCCCCCTCCTCCTCTCCTT
CCTCATCCTCCCCCCTCCTGGACCTGGTCATCGAACGCATCGACTTCAAA
CCCATGGTACATCTGTATATGCAGGCCTTCCACGAGCTGAGGGAGGAGGG
ACTCGTGGATAGAAGACGGGCGATTGGCTTGTTAAGGATGTGGATGAACC
TGGGCTTGCTCTTTGGAGGCAACTCGGATCCGACGTTGGGCATGTTCTCA
CAGGTGAGTGAGTTATTTCTATATATATACATGCCTGCCTTCCTATTCCC
TCCTTCTTCCCCTCCTTCCGCAGGTCTGACACATAGACTCTCACTCTGTC
CTTCCCTCTCTACCTCCCTCCTTAGGTCCAGGACTC
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Coding sequence (CDS) from alignment at scaffold_30:93312..94097-

>mRNA_8981 ID=mRNA_8981|Name=jgi.p|Nanoce1779_2|248639|organism=Nannochloropsis oceanica|type=CDS|length=1142bp|location=Sequence derived from alignment at scaffold_30:93312..94097- (Nannochloropsis oceanica)
GTGCTATCGCCTAAACAAGCCCTGCCGTCCCCCCACAGAATCACTCGAGC
TCCTCCACCACCCTGCCTCCTCCTCCTCCTCCTCCTCCTCCTTCTCCTCC
CCCTCCTCCCCCTCCTCCTCTCCTTCCTCATCCTCCCCCCTCCTGGACCT
GGTCATCGAACGCATCGACTTCAAACCCATGGTACATCTGTATATGCAGG
CCTTCCACGAGCTGAGGGAGGAGGGACTCGTGGATAGAAGACGGGCGATT
GGCTTGTTAAGGATGTGGATGAACCTGGGCTTGCTCTTTGGAGGCAACTC
GGATCCGACGTTGGGCATGTTCTCACAGGTGAGTGAGTTATTTCTATATA
TATACATGCCTGCCTTCCTATTCCCTCCTTCTTCCCCTCCTTCCGCAGGT
CTGACACATAGACTCTCACTCTGTCCTTCCCTCTCTACCTCCCTCCTTAG
GTCCAGGACTCGACAGAGACTTTCTACCATGGCCTAGCGCTGTAAAAAAG
AGACCGCGGGGCTCCTGCGAGGTATGCTATCAGCTCAAGACACAGTGCGA
CAAGACGTTCCCTTGTGGAAGGTGCTATCGCCTAAACAAGCCCTGCCGTC
CCCCCACAGAATCACTCGAGCTCCTCCACCACCCTGCCTCCTCCTCCTCC
TCCTCCTCCTCCTTCTCCTCCCCCTCCTCCCCCTCCTCCTCTCCTTCCTC
ATCCTCCCCCCTCCTGGACCTGGTCATCGAACGCATCGACTTCAAACCCA
TGGTACATCTGTATATGCAGGCCTTCCACGAGCTGAGGGAGGAGGGACTC
GTGGATAGAAGACGGGCGATTGGCTTGTTAAGGATGTGGATGAACCTGGG
CTTGCTCTTTGGAGGCAACTCGGATCCGACGTTGGGCATGTTCTCACAGG
TGAGTGAGTTATTTCTATATATATACATGCCTGCCTTCCTATTCCCTCCT
TCTTCCCCTCCTTCCGCAGGTCTGACACATAGACTCTCACTCTGTCCTTC
CCTCTCTACCTCCCTCCTTAGGTCCAGGACTCGACAGAGACTTTCTACCA
TGGCCTAGCGCTGTAAAAAAGAGACCGCGGGGCTCCTGCGAGGTATGCTA
TCAGCTCAAGACACAGTGCGACAAGACGTTCCCTTGTGGAAG
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Synonyms
Publications