jgi.p|Nanoce1779_2|673799, mRNA_8980 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|673799
Unique Name	mRNA_8980
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1728
Alignment location	scaffold_30:85953..88838 -

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Properties


Property Name	Value
TranscriptId	673885
Track	FilteredModels2
ProteinId	673799

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_30	supercontig	scaffold_30:85953..88838 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673799	gene_8980	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673799	mRNA_8980-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8980	CDS_8980	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_30:85953..88838-
coding sequence from alignment at scaffold_30:85953..88838-

mRNA sequence

>mRNA_8980 ID=mRNA_8980|Name=jgi.p|Nanoce1779_2|673799|organism=Nannochloropsis oceanica|type=mRNA|length=1728bp
ACAGCAAGCATGCACCAATCGCAAAGCAGCAGCCAAAACCACCACCACGG
ACAGTCCAAAGAGGAGCACAAGAGCGACAAGGACGACCGTGACAGTGCAG
CGTTGGATGGTGATGATAATCACCGCGAGGATTGTATTCCCGCTCCTGCA
TCAAGACGAACAACACCAGGGAGTGGAGAAGAAGGGGGAGGGGCAACATT
CTCGGACGAACGTCTCGCCACAAGTATCGCATTTGACCTCGCCTCTCTCG
AGCCGGGTCTTGGCAAACCTTGTCTGCCTGAGGAACCTCTTCAACCACCA
CTATCGACACCCCAAATACCACCACCGCCTACAGCCTCAGATAAGGAAGG
AGAGACATCAAAAATAATTTTTAAGAAAGCAGGGGAAGGAGTGACAGCAG
GAACAGCAGAACCAGCAACGGAAGCAGCAACAGGAGCAGCAGCGAGCAGG
GTGGACAGAGACTTTCTACCATGGCCTAGCGCTGTAAAAAAGAGACCGCG
GGGCTCCTGCGAGTTGTGCTACCAGCTCAAGACACAGTGCGACAAGAAGT
TCCCTTGCGGAAGGTGCTACCGCCTAAACAAGCCCTGCCGCCCCCCCACA
GAATCACTCGAGCTCCTTTACAACCCTGCCTCCTCCTCATCGTCCTCCTC
CTCTTCCGCCCCCTTATCCTCCTCCTCCTCCCCCTCCTCCTCTCCTTCCT
CCCCCTCCCCCCTCCTGGACCTGGTCATCGAACGTATCGACTTCAAACCC
ATGGTACATCTGTATATGCAGGCCTTCCACGGGCTGAGGGAGGAGGGACT
CGTGGATAGAAGACGGGCGATTGGCTTGTTAAGGATGTGGATGAACCTGG
GCTTGCTCTTTGGAGGCAACTCGGATCCGACGTTGGGCATGTTCTCACAG
GTGAGTGAGTTATTTCTATATATATACATGCCTGCCTTCCTATTCCCTCC
TTCTTCCCCTCCTTCCGCAGGGCCGACACATAGACTCTCACTCTGTCCTT
CCCTCTCTACCTCCCTCCTTAGGTCCAGGACTCCCTAGGCATTAGTGGCG
TAGAGCTCGAGGATCCCGTGTATCTGGCTCATGAGGCCCCCTTGTCCGTG
AGGAGGCAGAGGCTACGGGACATGCAGGTCGACAGCATGGTCGGCGAGCG
AGCAAAGGCCCTCCGGCTGACCCCGGCGTTCCAGCACGCCGATGACGGCC
GACGGGCTGTGTATTTGGCCACCGTGGATGGGGCAGACTCTAGCGTGGCG
ACCAATCATGCCTATGACACCTTCTACCGACGCCCAGGGGAATTGATGCA
GGATATGAGGAGGCGGCGGGTCGTTGCGCCTGAAGACCGACTGTCTTTCT
TCCGAAGCTTGCTCTACAGCACCCTCACGACCTGCCCTGCCAAAATGACG
GGCCTTGTCAAGTGCTTCGATCGACAGGGAAACATGACGCTCTTCCTGGT
CGAAGCCAGGGCCATCCAACTCTCCCCCACGGCATGGGCCGCTATGAGCA
TCCACGAGCCTGCGCCTAGCTCCCGCCACATCACCTCCCGCCCCGACACC
ACCCGCACTCCTGCCTTCCTCGCTCAGGCACACCAATAAGCTGGCCTCCT
TCTGGCCCCTCGTCCCCCCTCCACCCCTCCCCTGTTCTTCCTCCTCCTCC
TCTTGCTCCTCCTCCTCCTTCTGCTCCTCAGTCCTCCCTCCATCCTTCCA
CTGTTTCTCCTCCTTCTGCTCCTCTAGC

protein sequence of jgi.p|Nanoce1779_2|673799

>mRNA_8980-protein ID=mRNA_8980-protein|Name=jgi.p|Nanoce1779_2|673799|organism=Nannochloropsis oceanica|type=polypeptide|length=343bp
MHQSQSSSQNHHHGQSKEEHKSDKDDRDSAALDGDDNHREDCIPAPASRR
TTPGSGEEGGGATFSDERLATSIAFDLASLEPGLGKPCLPEEPLQPPLST
PQIPPPPTASDKEGETSKIIFKKAGEGVTAGTAEPATEAATGAAASRVDR
DFLPWPSAVKKRPRGSCELCYQLKTQCDKKFPCGRCYRLNKPCRPPTESL
ELLYNPASSSSSSSSSAPLSSSSSPSSSPSSPSPLLDLVIERIDFKPMVH
LYMQAFHGLREEGLVDRRRAIGLLRMWMNLGLLFGGNSDPTLGMFSQVSE
LFLYIYMPAFLFPPSSPPSAGPTHRLSLCPSLSTSLLRSRTP*

mRNA from alignment at scaffold_30:85953..88838-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8980 ID=mRNA_8980|Name=jgi.p|Nanoce1779_2|673799|organism=Nannochloropsis oceanica|type=mRNA|length=2886bp|location=Sequence derived from alignment at scaffold_30:85953..88838- (Nannochloropsis oceanica)
ACAGCAAGCATGCACCAATCGCAAAGCAGCAGCCAAAACCACCACCACGG
ACAGTCCAAAGAGGAGCACAAGAGCGACAAGGACGACCGTGACAGTGCAG
CGTTGGATGGTGATGATAATCACCGCGAGGATTGTATTCCCGCTCCTGCA
TCAAGACGAACAACACCAGGGAGTGGAGAAGAAGGGGGAGGGGCAACATT
CTCGGACGAACGTCTCGCCACAAGTATCGCATTTGACCTCGCCTCTCTCG
AGCCGGGTCTTGGCAAACCTTGTCTGCCTGAGGAACCTCTTCAACCACCA
CTATCGACACCCCAAATACCACCACCGCCTACAGCCTCAGATAAGGAAGG
AGAGACATCAAAAATAATTTTTAAGAAAGCAGGGGAAGGAGTGACAGCAG
GAACAGCAGAACCAGCAACGGAAGCAGCAACAGGAGCAGCAGCGAGCAGG
GTGGACAGAGACTTTCTACCATGGCCTAGCGCTGTAAAAAAGAGACCGCG
GGGCTCCTGCGAGTTGTGCTACCAGCTCAAGACACAGTGCGACAAGAAGT
TCCCTTGCGGAAGGTGCGTGCTCTATAAAAGGGAATGAGATTGCTTTTCT
TTAAATATAGTCTCTTGATTCATTCATCTATCCACCAACTTATTATTATT
ATCCAGTCCCTGATAAATTATTCACTAAGGCCTTCCTCCCAACGTAATAC
GAGGGGGTATGTTTGGCGGTTCGGTATGCTCAGTCATGATCCTCCAATAC
TATGAACACGCAGGACTGGTCGAGGCCAGCATCAATAATATCCATGCATT
GAGTGCCTCACAAACCTTTTCCCTCCCAATCTACGCCCCTCTCCAGGTGC
TACCGCCTAAACAAGCCCTGCCGCCCCCCCACAGAATCACTCGAGCTCCT
TTACAACCCTGCCTCCTCCTCATCGTCCTCCTCCTCTTCCGCCCCCTTAT
CCTCCTCCTCCTCCCCCTCCTCCTCTCCTTCCTCCCCCTCCCCCCTCCTG
GACCTGGTCATCGAACGTATCGACTTCAAACCCATGGTACATCTGTATAT
GCAGGCCTTCCACGGGCTGAGGGAGGAGGGACTCGTGGATAGAAGACGGG
CGATTGGCTTGTTAAGGATGTGGATGAACCTGGGCTTGCTCTTTGGAGGC
AACTCGGATCCGACGTTGGGCATGTTCTCACAGGTGAGTGAGTTATTTCT
ATATATATACATGCCTGCCTTCCTATTCCCTCCTTCTTCCCCTCCTTCCG
CAGGGCCGACACATAGACTCTCACTCTGTCCTTCCCTCTCTACCTCCCTC
CTTAGGTCCAGGACTCCCTAGGCATTAGTGGCGTAGAGCTCGAGGATCCC
GTGTATCTGGCTCATGAGGCCCCCTTGTCCGTGAGGAGGCAGAGGCTACG
GGACATGCAGGTCGACAGCATGGTCGGCGAGCGAGCAAAGGGTGAGAGGG
CGGGAAGGAGGGCGGGAGGGGGGAGGAAGGGCGGGAGGGAGGGCAGGAGG
GAGGGCAGGAGGGAGGGCGGGAGGGAGGGTGGGAGGGATGGCGGGAGGGA
GGGAGAAATAAGGAAGGATATATTTACCTCCGAGTCACCAACAGCGAACA
CCGCGCTAGTGCCATGCCTGCCACTTACAACCCCCATCCCTCCCTCTCTT
CATCCCTCCTTCTTTCCTTCCCTCCCTCCCTCCTTCCTCCAGCCCTCCGG
CTGACCCCGGCGTTCCAGCACGCCGATGACGGCCGACGGGCTGTGTATTT
GGCCACCGTGGATGGGGCAGACTCTAGCGTGGCGACCAATCATGCCTATG
ACACCTTCTACCGACGCCCAGGGGAATTGATGCAGGATATGAGGAGGCGG
CGGTGCGATATCTCCTTCTTGCTTGCCTCGTGAGTAGGGGCGGAAGATGG
GAAGGAGAGGAAGGACAAAGGGGAGAGGGAGGGAAGGAGGGAGAGAGGGA
GGACATGCGGATGCATGACGTCCTACTCATTGGTTTCACTCAGTTATCTC
CTTCTCCCTCCCTCCCTCTTGTACTCCCTCCCTCCTTCCCAGGGTCGTTG
CGCCTGAAGACCGACTGTCTTTCTTCCGAAGCTTGCTCTACAGCACCCTC
ACGACCTGCCCTGCCAAAATGACGGGCCTTGTCAAGGTAAGCTATTCTTC
CCTCTCTCCCTCCCTCTCTGTCCCCCTCTCTCCCTTTTACCTTCTCTCTC
TTGCTCATCTGATCTCCCCCCCCCTCTTTGTGTCCCCGCTCCCCTTTCCC
TCAGTGCTTCGATCGACAGGGAAACATGACGCTCTTCCTGGTCGAAGCCA
GGGCCATCCAACTCTCCCCCACGGCATGGGCCGCTATGAGCATCCACGAG
CCTGCGCCTAGCTCCCGCCACATCACCTCCCGCCCCGACACCACCCGCAC
TGTGAACACCCACCATCCTGCCTTTCAGCCGGCCTCTCCCCTGAGGGAAG
GAAGCATGCAATGGAGGGGGAGGGAGGAGGGAGGGGGAAAGGGAGGGGAG
GAGAGGGGAGGAGAGGGGAGGGAGGAGAAGAGAGGGCCATGCACGTTGTC
GGGTCCGTCCTTGTCCTCGTCCTCGTCCTCGTCTTCAACACTTCTCACCT
CTACTTCCCTGCCTTGTGCCTCCTCCTCCTCCTTCTTCGTTCCTCCTCCG
CCCCTCCCTCCCTCCCTCCCTTTTCCCGGCGTGGCATCTCTCCCTTTCCC
TCTTCCACCTCGCTCAGCCTGCCTTCCTCGCTCAGGCACACCAATAAGCT
GGCCTCCTTCTGGCCCCTCGTCCCCCCTCCACCCCTCCCCTGTTCTTCCT
CCTCCTCCTCTTGCTCCTCCTCCTCCTTCTGCTCCTCAGTCCTCCCTCCA
TCCTTCCACTGTTTCTCCTCCTTCTGCTCCTCTAGC

Coding sequence (CDS) from alignment at scaffold_30:85953..88838-

>mRNA_8980 ID=mRNA_8980|Name=jgi.p|Nanoce1779_2|673799|organism=Nannochloropsis oceanica|type=CDS|length=2058bp|location=Sequence derived from alignment at scaffold_30:85953..88838- (Nannochloropsis oceanica)
GTGCTACCGCCTAAACAAGCCCTGCCGCCCCCCCACAGAATCACTCGAGC
TCCTTTACAACCCTGCCTCCTCCTCATCGTCCTCCTCCTCTTCCGCCCCC
TTATCCTCCTCCTCCTCCCCCTCCTCCTCTCCTTCCTCCCCCTCCCCCCT
CCTGGACCTGGTCATCGAACGTATCGACTTCAAACCCATGGTACATCTGT
ATATGCAGGCCTTCCACGGGCTGAGGGAGGAGGGACTCGTGGATAGAAGA
CGGGCGATTGGCTTGTTAAGGATGTGGATGAACCTGGGCTTGCTCTTTGG
AGGCAACTCGGATCCGACGTTGGGCATGTTCTCACAGGTGAGTGAGTTAT
TTCTATATATATACATGCCTGCCTTCCTATTCCCTCCTTCTTCCCCTCCT
TCCGCAGGGCCGACACATAGACTCTCACTCTGTCCTTCCCTCTCTACCTC
CCTCCTTAGGTCCAGGACTCCCTAGATGCACCAATCGCAAAGCAGCAGCC
AAAACCACCACCACGGACAGTCCAAAGAGGAGCACAAGAGCGACAAGGAC
GACCGTGACAGTGCAGCGTTGGATGGTGATGATAATCACCGCGAGGATTG
TATTCCCGCTCCTGCATCAAGACGAACAACACCAGGGAGTGGAGAAGAAG
GGGGAGGGGCAACATTCTCGGACGAACGTCTCGCCACAAGTATCGCATTT
GACCTCGCCTCTCTCGAGCCGGGTCTTGGCAAACCTTGTCTGCCTGAGGA
ACCTCTTCAACCACCACTATCGACACCCCAAATACCACCACCGCCTACAG
CCTCAGATAAGGAAGGAGAGACATCAAAAATAATTTTTAAGAAAGCAGGG
GAAGGAGTGACAGCAGGAACAGCAGAACCAGCAACGGAAGCAGCAACAGG
AGCAGCAGCGAGCAGGGTGGACAGAGACTTTCTACCATGGCCTAGCGCTG
TAAAAAAGAGACCGCGGGGCTCCTGCGAGTTGTGCTACCAGCTCAAGACA
CAGTGCGACAAGAAGTTCCCTTGCGGAAGGTGCTACCGCCTAAACAAGCC
CTGCCGCCCCCCCACAGAATCACTCGAGCTCCTTTACAACCCTGCCTCCT
CCTCATCGTCCTCCTCCTCTTCCGCCCCCTTATCCTCCTCCTCCTCCCCC
TCCTCCTCTCCTTCCTCCCCCTCCCCCCTCCTGGACCTGGTCATCGAACG
TATCGACTTCAAACCCATGGTACATCTGTATATGCAGGCCTTCCACGGGC
TGAGGGAGGAGGGACTCGTGGATAGAAGACGGGCGATTGGCTTGTTAAGG
ATGTGGATGAACCTGGGCTTGCTCTTTGGAGGCAACTCGGATCCGACGTT
GGGCATGTTCTCACAGGTGAGTGAGTTATTTCTATATATATACATGCCTG
CCTTCCTATTCCCTCCTTCTTCCCCTCCTTCCGCAGGGCCGACACATAGA
CTCTCACTCTGTCCTTCCCTCTCTACCTCCCTCCTTAGGTCCAGGACTCC
CTAGATGCACCAATCGCAAAGCAGCAGCCAAAACCACCACCACGGACAGT
CCAAAGAGGAGCACAAGAGCGACAAGGACGACCGTGACAGTGCAGCGTTG
GATGGTGATGATAATCACCGCGAGGATTGTATTCCCGCTCCTGCATCAAG
ACGAACAACACCAGGGAGTGGAGAAGAAGGGGGAGGGGCAACATTCTCGG
ACGAACGTCTCGCCACAAGTATCGCATTTGACCTCGCCTCTCTCGAGCCG
GGTCTTGGCAAACCTTGTCTGCCTGAGGAACCTCTTCAACCACCACTATC
GACACCCCAAATACCACCACCGCCTACAGCCTCAGATAAGGAAGGAGAGA
CATCAAAAATAATTTTTAAGAAAGCAGGGGAAGGAGTGACAGCAGGAACA
GCAGAACCAGCAACGGAAGCAGCAACAGGAGCAGCAGCGAGCAGGGTGGA
CAGAGACTTTCTACCATGGCCTAGCGCTGTAAAAAAGAGACCGCGGGGCT
CCTGCGAGTTGTGCTACCAGCTCAAGACACAGTGCGACAAGAAGTTCCCT
TGCGGAAG

Synonyms

Publications