jgi.p|Nanoce1779_2|642236, mRNA_8978 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|642236
Unique Name	mRNA_8978
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	630
Alignment location	scaffold_30:82440..84120 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	642322
Track	FilteredModels2
ProteinId	642236

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_30	supercontig	scaffold_30:82440..84120 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|642236	gene_8978	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|642236	mRNA_8978-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8978	CDS_8978	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_30:82440..84120+
coding sequence from alignment at scaffold_30:82440..84120+

mRNA sequence

>mRNA_8978 ID=mRNA_8978|Name=jgi.p|Nanoce1779_2|642236|organism=Nannochloropsis oceanica|type=mRNA|length=630bp
ATGTTGCTCTCGGGCTTTCCCCCCTTCTCTACGGCGACTGGCAGCAAAAA
GGGCCTGGCACAAATAAAACAGCTCAAGAAGAATCTCTTCGACTCCCTCG
AAGGCTCGGATAAGGGTCGGGTCGATAAGGATGGCAGCAAGCAACGCACC
ATCAACGCTATCCTAGCCCTGGCGGAAGCCAATCCTACCCCCAACAGCGC
CACCAGCGGTTTAGCCTCGGGCACATGGGACCTGGTGTGGACAACGGAAG
ATGTGAGAACGGGAGGGAGGGAGAGAGGGGGTAAGGCTGAGAAGGGCGAA
ATCCACCTCTTCAGGAAAAAGGGTCTCCTGGGTTGTGCCTGTCGGGCGGT
CCTCCAAACCACGGAGCAGTCGGAGAGGAGGCTGGAAAACATCATTGAAT
TTGACCAAAACTCGGCTTTAAGGATCGTCTCCAAGCTCACACCCGAGGCC
ACCGGTCCTCGTGTGTATTTTACATGGGAGGACGCCCGCGTGATTTACAA
GGGGTTCTCGCTGCCATTCCCCTCGTTCTTCTTCGTCAGAAATGCCTACT
ACGATAATGTCTACTTAGACAAGGAACTGCGGTGCGTCAAAGACATTCGT
GGAAACTACCTGGTGGTAAGACGAGTGTAG

protein sequence of jgi.p|Nanoce1779_2|642236

>mRNA_8978-protein ID=mRNA_8978-protein|Name=jgi.p|Nanoce1779_2|642236|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MLLSGFPPFSTATGSKKGLAQIKQLKKNLFDSLEGSDKGRVDKDGSKQRT
INAILALAEANPTPNSATSGLASGTWDLVWTTEDVRTGGRERGGKAEKGE
IHLFRKKGLLGCACRAVLQTTEQSERRLENIIEFDQNSALRIVSKLTPEA
TGPRVYFTWEDARVIYKGFSLPFPSFFFVRNAYYDNVYLDKELRCVKDIR
GNYLVVRRV*

mRNA from alignment at scaffold_30:82440..84120+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8978 ID=mRNA_8978|Name=jgi.p|Nanoce1779_2|642236|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp|location=Sequence derived from alignment at scaffold_30:82440..84120+ (Nannochloropsis oceanica)
ATGTTGCTCTCGGGCTTTCCCCCCTTCTCTACGGCGACTGGCAGCAAAAA
GGGCCTGGCACAAATAAAACAGCTCAAGAAGAATGTAGGTCATAAGCTGG
AGGGAAGGAAGACCCACGCCGCATAGACCTACACGTAACGCACAGAAAAA
AAACTCCATCATGCATAATTATCACTATTATTATTCTCGAAACGAATAAA
TTAATAAACAAACATAACAAACATAAACAAACAAACAAAAGAATCGTCCA
TTTCAATCCTTCCTCACCACCAATCTCAACCCCGCACTCGCAGCTCTTCG
ACTCCCTCGAAGGCTCGGATAAGGGTCGGGTCGATAAGGATGGCAGCAAG
CAACGCACCATCAACGCTATCCTAGCCCTGGCGGAAGGTAAGTAAGAGCG
ATCCTCCTTCCCTTCCTTCCTCCGTCCCTTGTCCCTCCTGTTCTCCAGGT
ATGGAAAATAAATCTCGAGTTAGTCTGCATCCAGCCCACTCTCTACCTCT
CCCTCCCTTCGAAGCCAATCCTACCCCCAACAGCGCCACCAGCGGTTTAG
CCTCGGGCACATGGGACCTGGTGTGGACAACGGAAGATGTGAGAACGGGA
GGGAGGGAGAGAGGGGGTAAGGCTGAGAAGGGCGTACAAGAGGAAGGAGA
AATGGTGATATTTCCCTCCTTTTATTCCCTCTTTCGTCCCTCCCTCCTCA
AGAATCTACTTTTAGGTGGTGCCTGCCAAGCCATCTTACAAGCCACATAG
AGCACTCGATTTTAAAATCAAATTTAAAATTCAATAATTCAAAAATAATT
CAGAAGAGGCAACGAGAAGTTAGACCACAGTTTCCTCAATATAAATATTC
GTTCTTCTTTAAATCACTCTCTCTCTTTCTGTTACCGCTCAGGAAATCCA
CCTCTTCAGGAAAAAGGGTCTCCTGGGTTGTGCCTGTCGGGCGGTCCTCC
AAACCACGGAGCAGTCGGAGAGGAGGCTGGAAAACATCATTGAATTTGAC
CAAAACTCGGCTTTAAGGATCGTCTCCAAGCTCACACCCGAGGTAGGTGA
TTTGTAAGCACAGTCAGATTAGTTATACTGTTGTTCCAATATCAACGGTA
TGCCCGATGGTTGCTCGTGGCGCTTCAAGAGCGTGTGGTAGGCTACTGCT
TCGTATGCTTCCGGAGGTGAGGGCGAAGGGTAGGCTGCCCTCCACATTTA
TCACCCACTGCGACTGGTATCTTGTGTCGACGTCTACAAGGGGGGAACAG
ACGCGCTGTCGGTTTTTCTGTCGCCTCTCCAAACGTGCACCTTCAGACCT
TCCCTCCTCCCCTCGCTTCCTCCCTCCCTCCCTCCCTCGTTCCTTTAGGC
CACCGGTCCTCGTGTGTATTTTACATGGGAGGACGCCCGCGTGATTTACA
AGGGGTTCTCGCTGCCATTCCCCTCGTTCTTCTTCGTCAGAAATGCCTAG
TAAGATGGGGGTAAAAAGGAGAAAGGGAGATAGGGAAGGGATAGAGAAAG
GAAGGGAGACGGCAAACAAAATGCCCACATTTGAAGCCTCCATTTTCTTG
CGAATAGTCTCATTAAATCCCTTCCCCCCCCTTTCCTCCTCACCTTCAGC
TACGATAATGTCTACTTAGACAAGGAACTGCGGTGCGTCAAAGACATTCG
TGGAAACTACCTGGTGGTAAGACGAGTGTAG

Coding sequence (CDS) from alignment at scaffold_30:82440..84120+

>mRNA_8978 ID=mRNA_8978|Name=jgi.p|Nanoce1779_2|642236|organism=Nannochloropsis oceanica|type=CDS|length=3780bp|location=Sequence derived from alignment at scaffold_30:82440..84120+ (Nannochloropsis oceanica)
ATGTTGCTCTCGGGCTTTCCCCCCTTCTCTACGGCGACTGGCAGCAAAAA
GGGCCTGGCACAAATAAAACAGCTCAAGAAGAATCTCTTCGACTCCCTCG
AAGGCTCGGATAAGGGTCGGGTCGATAAGGATGGCAGCAAGCAACGCACC
ATCAACGCTATCCTAGCCCTGGCGGAAGCCAATCCTACCCCCAACAGCGC
CACCAGCGGTTTAGCCTCGGGCACATGGGACCTGGTGTGGACAACGGAAG
ATGTGAGAACGGGAGGGAGGGAGAGAGGGGGTAAGGCTGAGAAGGGCGAA
ATCCACCTCTTCAGGAAAAAGGGTCTCCTGGGTTGTGCCTGTCGGGCGGT
CCTCCAAACCACGGAGCAGTCGGAGAGGAGGCTGGAAAACATCATTGAAT
TTGACCAAAACTCGGCTTTAAGGATCGTCTCCAAGCTCACACCCGAGGCC
ACCGGTCCTCGTGTGTATTTTACATGGGAGGACGCCCGCGTGATTTACAA
GGGGTTCTCGCTGCCATTCCCCTCGTTCTTCTTCGTCAGAAATGCCTACT
ACGATAATGTCTACTTAGACAAGGAACTGCGGTGCGTCAAAGACATTCGT
GGAAACTACCTGGTGGTAAGACGAGTGTAGATGTTGCTCTCGGGCTTTCC
CCCCTTCTCTACGGCGACTGGCAGCAAAAAGGGCCTGGCACAAATAAAAC
AGCTCAAGAAGAATCTCTTCGACTCCCTCGAAGGCTCGGATAAGGGTCGG
GTCGATAAGGATGGCAGCAAGCAACGCACCATCAACGCTATCCTAGCCCT
GGCGGAAGCCAATCCTACCCCCAACAGCGCCACCAGCGGTTTAGCCTCGG
GCACATGGGACCTGGTGTGGACAACGGAAGATGTGAGAACGGGAGGGAGG
GAGAGAGGGGGTAAGGCTGAGAAGGGCGAAATCCACCTCTTCAGGAAAAA
GGGTCTCCTGGGTTGTGCCTGTCGGGCGGTCCTCCAAACCACGGAGCAGT
CGGAGAGGAGGCTGGAAAACATCATTGAATTTGACCAAAACTCGGCTTTA
AGGATCGTCTCCAAGCTCACACCCGAGGCCACCGGTCCTCGTGTGTATTT
TACATGGGAGGACGCCCGCGTGATTTACAAGGGGTTCTCGCTGCCATTCC
CCTCGTTCTTCTTCGTCAGAAATGCCTACTACGATAATGTCTACTTAGAC
AAGGAACTGCGGTGCGTCAAAGACATTCGTGGAAACTACCTGGTGGTAAG
ACGAGTGTAGATGTTGCTCTCGGGCTTTCCCCCCTTCTCTACGGCGACTG
GCAGCAAAAAGGGCCTGGCACAAATAAAACAGCTCAAGAAGAATCTCTTC
GACTCCCTCGAAGGCTCGGATAAGGGTCGGGTCGATAAGGATGGCAGCAA
GCAACGCACCATCAACGCTATCCTAGCCCTGGCGGAAGCCAATCCTACCC
CCAACAGCGCCACCAGCGGTTTAGCCTCGGGCACATGGGACCTGGTGTGG
ACAACGGAAGATGTGAGAACGGGAGGGAGGGAGAGAGGGGGTAAGGCTGA
GAAGGGCGAAATCCACCTCTTCAGGAAAAAGGGTCTCCTGGGTTGTGCCT
GTCGGGCGGTCCTCCAAACCACGGAGCAGTCGGAGAGGAGGCTGGAAAAC
ATCATTGAATTTGACCAAAACTCGGCTTTAAGGATCGTCTCCAAGCTCAC
ACCCGAGGCCACCGGTCCTCGTGTGTATTTTACATGGGAGGACGCCCGCG
TGATTTACAAGGGGTTCTCGCTGCCATTCCCCTCGTTCTTCTTCGTCAGA
AATGCCTACTACGATAATGTCTACTTAGACAAGGAACTGCGGTGCGTCAA
AGACATTCGTGGAAACTACCTGGTGGTAAGACGAGTGTAGATGTTGCTCT
CGGGCTTTCCCCCCTTCTCTACGGCGACTGGCAGCAAAAAGGGCCTGGCA
CAAATAAAACAGCTCAAGAAGAATCTCTTCGACTCCCTCGAAGGCTCGGA
TAAGGGTCGGGTCGATAAGGATGGCAGCAAGCAACGCACCATCAACGCTA
TCCTAGCCCTGGCGGAAGCCAATCCTACCCCCAACAGCGCCACCAGCGGT
TTAGCCTCGGGCACATGGGACCTGGTGTGGACAACGGAAGATGTGAGAAC
GGGAGGGAGGGAGAGAGGGGGTAAGGCTGAGAAGGGCGAAATCCACCTCT
TCAGGAAAAAGGGTCTCCTGGGTTGTGCCTGTCGGGCGGTCCTCCAAACC
ACGGAGCAGTCGGAGAGGAGGCTGGAAAACATCATTGAATTTGACCAAAA
CTCGGCTTTAAGGATCGTCTCCAAGCTCACACCCGAGGCCACCGGTCCTC
GTGTGTATTTTACATGGGAGGACGCCCGCGTGATTTACAAGGGGTTCTCG
CTGCCATTCCCCTCGTTCTTCTTCGTCAGAAATGCCTACTACGATAATGT
CTACTTAGACAAGGAACTGCGGTGCGTCAAAGACATTCGTGGAAACTACC
TGGTGGTAAGACGAGTGTAGATGTTGCTCTCGGGCTTTCCCCCCTTCTCT
ACGGCGACTGGCAGCAAAAAGGGCCTGGCACAAATAAAACAGCTCAAGAA
GAATCTCTTCGACTCCCTCGAAGGCTCGGATAAGGGTCGGGTCGATAAGG
ATGGCAGCAAGCAACGCACCATCAACGCTATCCTAGCCCTGGCGGAAGCC
AATCCTACCCCCAACAGCGCCACCAGCGGTTTAGCCTCGGGCACATGGGA
CCTGGTGTGGACAACGGAAGATGTGAGAACGGGAGGGAGGGAGAGAGGGG
GTAAGGCTGAGAAGGGCGAAATCCACCTCTTCAGGAAAAAGGGTCTCCTG
GGTTGTGCCTGTCGGGCGGTCCTCCAAACCACGGAGCAGTCGGAGAGGAG
GCTGGAAAACATCATTGAATTTGACCAAAACTCGGCTTTAAGGATCGTCT
CCAAGCTCACACCCGAGGCCACCGGTCCTCGTGTGTATTTTACATGGGAG
GACGCCCGCGTGATTTACAAGGGGTTCTCGCTGCCATTCCCCTCGTTCTT
CTTCGTCAGAAATGCCTACTACGATAATGTCTACTTAGACAAGGAACTGC
GGTGCGTCAAAGACATTCGTGGAAACTACCTGGTGGTAAGACGAGTGTAG
ATGTTGCTCTCGGGCTTTCCCCCCTTCTCTACGGCGACTGGCAGCAAAAA
GGGCCTGGCACAAATAAAACAGCTCAAGAAGAATCTCTTCGACTCCCTCG
AAGGCTCGGATAAGGGTCGGGTCGATAAGGATGGCAGCAAGCAACGCACC
ATCAACGCTATCCTAGCCCTGGCGGAAGCCAATCCTACCCCCAACAGCGC
CACCAGCGGTTTAGCCTCGGGCACATGGGACCTGGTGTGGACAACGGAAG
ATGTGAGAACGGGAGGGAGGGAGAGAGGGGGTAAGGCTGAGAAGGGCGAA
ATCCACCTCTTCAGGAAAAAGGGTCTCCTGGGTTGTGCCTGTCGGGCGGT
CCTCCAAACCACGGAGCAGTCGGAGAGGAGGCTGGAAAACATCATTGAAT
TTGACCAAAACTCGGCTTTAAGGATCGTCTCCAAGCTCACACCCGAGGCC
ACCGGTCCTCGTGTGTATTTTACATGGGAGGACGCCCGCGTGATTTACAA
GGGGTTCTCGCTGCCATTCCCCTCGTTCTTCTTCGTCAGAAATGCCTACT
ACGATAATGTCTACTTAGACAAGGAACTGCGGTGCGTCAAAGACATTCGT
GGAAACTACCTGGTGGTAAGACGAGTGTAG

Synonyms

Publications