jgi.p|Nanoce1779_2|604742, mRNA_8977 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604742
Unique Name	mRNA_8977
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	614
Alignment location	scaffold_30:77985..81720 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	604828
Track	FilteredModels2
ProteinId	604742

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_30	supercontig	scaffold_30:77985..81720 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604742	gene_8977	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604742	mRNA_8977-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8977	CDS_8977	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_30:77985..81720+
coding sequence from alignment at scaffold_30:77985..81720+

mRNA sequence

>mRNA_8977 ID=mRNA_8977|Name=jgi.p|Nanoce1779_2|604742|organism=Nannochloropsis oceanica|type=mRNA|length=614bp
CCTCCCCTCCTTCCTTCCTTCTATGGGCACGCCTGGTGTGTGAGGGTGTG
ACTGAGACGAAAATGTCAGGGGGGACTGAGGGAGGGAGGGAAAGAGGGAG
CGCTTGTTTCTTACCTTGAGCACACACAGGACTCCTGGGGGGGGGCGAAA
AGGACGTGCAAGGGTCATGCTGGAGAAGTAGGGAATGGAGAAAGACCTGA
TGGAGGTCCTCGTCGGTGATGGAAGGGACGTCAAAGAAGTGGGAATTGTT
CCGAAGATACTCCTTGAGCATGTCCGCCTCGTCAGAATCGTAGTATGCAT
GTCGGTCCTCCCCGGCGCCAGCATCAACAGGTAGAATGCATTTCCCAAAG
CTGCGTCTTCGTATTCGTCCCCACTATCCTCGTCCTTCTCTTGCACACTC
GTTGTTGCTTTGCGCTTGGCCATGGCCGGGGGCATCCAATTAGGCGAGGG
GGTGGCCCACAAGGGGGATGGAAAGGAAAAAACGCAAGAAGGACAGCGTC
CAGGAAGTTCCGACTTCTCGATTCGATGCTGTTATCTACAATTCCTGCTG
CTGCTGCTGCTGCCGTTACAGCTGCTGTTGTTGGTGTTGGTGGTGGTATG
TGCTGCCTGTCGCT

protein sequence of jgi.p|Nanoce1779_2|604742

>mRNA_8977-protein ID=mRNA_8977-protein|Name=jgi.p|Nanoce1779_2|604742|organism=Nannochloropsis oceanica|type=polypeptide|length=106bp
MHVGPPRRQHQQVECISQSCVFVFVPTILVLLLHTRCCFALGHGRGHPIR
RGGGPQGGWKGKNARRTASRKFRLLDSMLLSTIPAAAAAAVTAAVVGVGG
GMCCLS

mRNA from alignment at scaffold_30:77985..81720+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8977 ID=mRNA_8977|Name=jgi.p|Nanoce1779_2|604742|organism=Nannochloropsis oceanica|type=mRNA|length=3736bp|location=Sequence derived from alignment at scaffold_30:77985..81720+ (Nannochloropsis oceanica)
CCTCCCCTCCTTCCTTCCCTCCCTCCCTCCCTTCCTCCCTCCCTCCGAGG
CAACGTCGCTCCCCTCTCCCTCCTGGCCCTGAACAAGACGCGGCTGTACG
TGCTGACGGGCAGTGCTCTAGTGGCAGCGTGGGGCATGATTCAGGTAGGT
ACAGAGGCACGGAAGCAGGAAGGGAGGGAGGGAGGGAGGACGGCCAAGGG
GAGAATTGCTCTCTTCTGGGACACGGGATGTGGGGGGGGGGGGGGGTTGG
AAAGGAATGATATCTGAATACCAACTAATGTTGATTATGATCATCTCTTC
TCTTCCTAGTGTGGCTCATGATTATCTTGTCTTACCCTCTACCATTGATT
TATGATTATCTTATCTCCTCGTCTTAATAGATTTTCCGCCTCCAGAAGAA
TCTTATTTACTTTGTCCTTACGGCAAGTGTCATGGGACTTGGGCTGCATG
AGTTGGGTAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGGGAAG
GGAGGGAGGGGGGAAGGGAAAAGAAAAAAGAGACGAAAATGGATAAGCAA
CGTGTGCGGGTCCTATTAACCGCACCTACATCCCTCCCTCCCTCCCTCCC
TCCTATCCTCCCCAGTGGCCCACCTGACGTCCCTGGAGCTGACCCTCATC
ATCGCCTCCTGGTCTCAATACTTCCTGGGCATGCTCATCTATGCCCTCGG
TGTGTCTCCACCCTCCTGCCCTCCCGCTCTCCCTCCCTCCCTCTTTCCCT
CCCCCCCCCATCCCTCACGCTTTCCTCCCCCTCTTGACGCGGCTCGCCTT
TCTCAATTTGTCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTTTCCCT
CCCTTTCTCTGCGGTTAGGCTGGCCACGTCTCTGGCCCAGGCATTTTTCT
TCCCACGAGCTCATGCACGCCCTCATTGTCACCGCGGCCGGGACAGCTGC
AGTGGTGACTTACTCCTTACTGGCACGCTTCGACGTCTCACGATGCTTGT
GGGCGCGGTAGAGACAGCCCTCCCTCTCTCCCTCCCTCCCTCCCTCCCTC
TTTTGCGATGGCCGCTCCTTCGTCCTGGTCTGTGTCGGATCAAGCTTGAC
AATGGTCGTGAGGAGGCGAGGCCTCATTCATCATCCTACGTGTGGAGGAA
TTTCGAGGTGTATGTGTGTCTATGTGTGTGTGCGTTTGCTGTGTTCACGT
TTGTGAGATGGCTGCAGAATGAAAAAAAAGTCGTCCTGGTCCTGCTCAGT
GTGAATTGAATGGGAGCTGGGCTGGCGGTGAAGCCGGAGGGTGGTTGATC
GCAGGATAACCTCAGAAAGAAAGAAACAATTGGAATTCTCAGTCTATTCT
AATGTGATTAATATTAGACATCTCGGAAAATATTAGGGATCTCGGTCGTT
TTTTGATTTTGGTTTGGTACAGGTACGCAGGTGCACATGGGTATAATAGA
TAGATTAAGGTCGAGGTGGACGAGCAGCCGAGGGAGAATGAAGAAGAGGA
TCAGAACGAAAAGGAGACGAGGGGCAGTGCACGGTTGTGCGTGTGAGTAT
GTGTGCTTGTCTGTGGATCTGCATGGGAGAGAGGCAAGACGTGAGTGCGT
GCGCGCGTACCTGCGTGTGGCTGTGGGTGTATGTATAAGCAAGAGAGAGG
GGAAGAGAGGGAGAGAGAGAGACAAAAGAGAGAAAAAGAGATTGAAAGAC
TAGAGAGGAAGGAGAACAGAAACTATAGGAAAGCAAACCGCAAAAGACGT
AGGGTTCACATGACATTTCAAAAATAATAATAATAACGATTTAAACAAAG
GCGAGAAAGGAGGCACAAGACTCAAGGTTGCATCATCGAGCCTTTGGAGC
CCGCGCGGTGTTTTTTAATTAGTCTATACATGGTTCTGGTGATTCTTTGT
CGATGCATTAATTCACCAGGCCTTGCCTGTGGCTTTGAGGCTTCAATGTG
GTCTTGATTTGGGGCATTTCGAGTGGGACGTTAATACCCGCCGATCCGCT
TATTCTTTTTCTTTCTATGTGCACACTAGGTTAGGTAGATAAATGGGTGG
CTGTCGAAATGCAAGGATTTACGGCTCTCTCACTCTCACTCTGTCCCTCC
CTCTTTCCCTTCCCCCCTCTCTGTCCTTCCCTCTACAATAACCAGAACTG
TTTCAGCTCTCCACGGGACACGATCAAGTGCCTGATGAGGGCGTGCGGAA
GCCTCCATTCCTGGCTCTCGATGTGGCCACGACTACCCCCCGTATCGCCC
CTGCGAGCAGACAAGCCAGGCAGCGAGGGAGAGAGGGAGGGAGGGAGGGA
GGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGATGAGCAA
AATTTTGGATGAAAAGTGCCAGAGACGCGCAAGTCCGACGAAAGTGCACG
TCTAGCCCATCTTCTTCCCCTGCCCTCTTTCCCTCCCTCCCTCCCTCCCT
TCCCACCTACCTCAGCCTTTCCTTCCGACCCTCCGTGGAGTACGTGACAT
GGAATATGGGGAGGGGGGGGGGTCTGGTGGGGCCGCAGCTTTAGCTTCTC
GTTTGGCCGCTGCTGCAGCTGCTGCTACTGCTGCTACTGTTGCTGCTGGT
GGTGGGAGAAGGAGGAGGGGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAG
GAGAAGTATCAAGAGATGCGCATTCGGATATTCCTGGGCGGCTGCTTCTT
TTCGAGTTGCTTCTTCTCAGGGGTTCTTTTTTCCCCCTTTAGTCCTTTGC
CTTTGCATGCCATGGAAGGAGACAGGGATAGATGGAGGAAGGGAGGGAGA
GATGAAGGCGATTCGTGGAATGCTGCCCGGGAAATGTGTCATCCGAGCCA
GAACTCCTTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCCCCCCCTCCTT
CCTTCTTCTATGGGCACGCCTGGTGTGTGAGGGTGTGACTGAGACGAAAA
TGTCAGGGGGGACTGAGGGAAGGAAGGAGGGAGGGAGGGAGGGAGGGAGG
GAGGGAAAGAGGGAGCGCTTGTTTCTTACCTTGAGCACACACAGGACTCC
TGGGGGGGGGCGAAAAGGACGTGCAAGGGTCATGCTGGAGAAGTAGGGAA
TGGAGAAAGACCTGATGGAGGTCCTCGTCGGTGATGGAAGGGACGTCAAA
GAAGTGGGAATTGTTCCGAAGATACTCCTGGTTGGGGAGGGAGGGAGGGA
GGGAGGAGGGGAGGGAAGGTGAGATAGAATCGTGACGAACAGCGGTTCCC
TTCCCCCGTTCCATTTTTCCACCGTCTCAGTAATCTTCAGCGTTATCCTC
AGCCTCTATCGAGCGACGGTTTCTTTCTCGGTCTTTCTCTATCTATCTTC
CCCTCCCGCCCGCCATCCCTCCCTTCCTCCCTACCTTGAGCATGTCCGCC
TCGTCAGAATCGTAGTATGCATGTCGGTCCTCCCCGGCGCCAGCATCAAC
AGGTAGAATGCATTTCCCAAAGCTGCGTCTTCGTATTCGTCCCCACTATC
CTCGTCCTTCTCTTGCACACTCGTTGTTGCTTTGCGCTTGGCCATGGCCG
GGGGCATCCAATTAGGCGAGGGGGTGGCCCACAAGGGGGATGGAAAGGAA
AAAACGCAAGAAGGACAGCGTCCAGGAAGTTCCGACTTCTCGATTCGATG
CTGTTATCTACAATTCCTGCTGCTGCTGCTGCTGCCGTTACAGCTGCTGT
TGTTGGTGTTGGTGGTGGTATGTGCTGCCTGTCGCT

Coding sequence (CDS) from alignment at scaffold_30:77985..81720+

>mRNA_8977 ID=mRNA_8977|Name=jgi.p|Nanoce1779_2|604742|organism=Nannochloropsis oceanica|type=CDS|length=320bp|location=Sequence derived from alignment at scaffold_30:77985..81720+ (Nannochloropsis oceanica)
ATGCATGTCGGTCCTCCCCGGCGCCAGCATCAACAGGTAGAATGCATTTC
CCAAAGCTGCGTCTTCGTATTCGTCCCCACTATCCTCGTCCTTCTCTTGC
ACACTCGTTGTTGCTTTGCGCTTGGCCATGGCCGGGGGCATCCAATTAGG
CGAGGGGGTGGCCCACAAGGGGGATGGAAAGGAAAAAACGCAAGAAGGAC
AGCGTCCAGGAAGTTCCGACTTCTCGATTCGATGCTGTTATCTACAATTC
CTGCTGCTGCTGCTGCTGCCGTTACAGCTGCTGTTGTTGGTGTTGGTGGT
GGTATGTGCTGCCTGTCGCT

Synonyms

Publications