jgi.p|Nanoce1779_2|604727, mRNA_8974 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604727
Unique NamemRNA_8974
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length795
Alignment locationscaffold_30:65631..66425 -

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Properties
Property NameValue
TranscriptId604813
TrackFilteredModels2
ProteinId604727
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:65631..66425 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604727gene_8974Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604727mRNA_8974-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8974CDS_8974Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8974 ID=mRNA_8974|Name=jgi.p|Nanoce1779_2|604727|organism=Nannochloropsis oceanica|type=mRNA|length=795bp
GATCTGATTTGCCGCAGAGATGTGAATACGTCGAGCGGGCGATGAGGTTA
GAAAATTATTATGATTTTCATTTTTCATATCATTCCGCCTTACACTACTC
TGCCTGCCCGCGGAGTCTTCTTTTTGCTCTCTGCAACCCTCCAACAGTCG
GACTGCAGACAGGCAAACATGTGGAGTGACAGACATTCATACCATCTATC
CTTTGCTTTCTCACTCTCATATGATTATTCCCCTCTTCTTTCTGTACCTT
TGTTGTCTTATTCTTCTACGTCTGCGGTCTCTGTTTGTTGTGGCTCTGGG
GTCCACGCGTGATTACATTGGTGGGTGGCAACAGTCCCTTCTCCTCTCTC
TTCCTCTCATCATAATCCTTGCAAGTCTCATCTTGTCTTGTTTCCTTTTG
CCGTCTTCTATATCTTCTCCTCTTCTTCTCTCGTCTATCTTTTCTCACCA
TATATTCCATTCTCTTGTTTCTCTCTCACCTACCACGGATGCTTGTGTGT
GCGTCTAAATATAAGTATATTTATATATAGACATGAATATGTATCAGTCT
TCGGCCCCTACCTCCATTCCTCTTCGCCTTCCTCCCTGTCTACCGTCTTT
CTCCCTTTCACTCTATCTTGCCTCTTCTCTTCCCCTTCTTCTTCTTCTTC
TCGTTCTTCTTCTTCACTATCTTCGTTTGCCCTCCCCTATAAGTATCTTG
CGTGATGTTTTACGTCCATGTCAGAAGGCCGTGACTCTGGTGACCCTCCC
TCCCTCGCTCTTTTCTTTTCGCTTTCATCCCTCCCTCCCTCCCTC
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protein sequence of jgi.p|Nanoce1779_2|604727

>mRNA_8974-protein ID=mRNA_8974-protein|Name=jgi.p|Nanoce1779_2|604727|organism=Nannochloropsis oceanica|type=polypeptide|length=96bp
MIIPLFFLYLCCLILLRLRSLFVVALGSTRDYIGGWQQSLLLSLPLIIIL
ASLILSCFLLPSSISSPLLLSSIFSHHIFHSLVSLSPTTDACVCV*
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mRNA from alignment at scaffold_30:65631..66425-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8974 ID=mRNA_8974|Name=jgi.p|Nanoce1779_2|604727|organism=Nannochloropsis oceanica|type=mRNA|length=795bp|location=Sequence derived from alignment at scaffold_30:65631..66425- (Nannochloropsis oceanica)
GATCTGATTTGCCGCAGAGATGTGAATACGTCGAGCGGGCGATGAGGTTA
GAAAATTATTATGATTTTCATTTTTCATATCATTCCGCCTTACACTACTC
TGCCTGCCCGCGGAGTCTTCTTTTTGCTCTCTGCAACCCTCCAACAGTCG
GACTGCAGACAGGCAAACATGTGGAGTGACAGACATTCATACCATCTATC
CTTTGCTTTCTCACTCTCATATGATTATTCCCCTCTTCTTTCTGTACCTT
TGTTGTCTTATTCTTCTACGTCTGCGGTCTCTGTTTGTTGTGGCTCTGGG
GTCCACGCGTGATTACATTGGTGGGTGGCAACAGTCCCTTCTCCTCTCTC
TTCCTCTCATCATAATCCTTGCAAGTCTCATCTTGTCTTGTTTCCTTTTG
CCGTCTTCTATATCTTCTCCTCTTCTTCTCTCGTCTATCTTTTCTCACCA
TATATTCCATTCTCTTGTTTCTCTCTCACCTACCACGGATGCTTGTGTGT
GCGTCTAAATATAAGTATATTTATATATAGACATGAATATGTATCAGTCT
TCGGCCCCTACCTCCATTCCTCTTCGCCTTCCTCCCTGTCTACCGTCTTT
CTCCCTTTCACTCTATCTTGCCTCTTCTCTTCCCCTTCTTCTTCTTCTTC
TCGTTCTTCTTCTTCACTATCTTCGTTTGCCCTCCCCTATAAGTATCTTG
CGTGATGTTTTACGTCCATGTCAGAAGGCCGTGACTCTGGTGACCCTCCC
TCCCTCGCTCTTTTCTTTTCGCTTTCATCCCTCCCTCCCTCCCTC
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Coding sequence (CDS) from alignment at scaffold_30:65631..66425-

>mRNA_8974 ID=mRNA_8974|Name=jgi.p|Nanoce1779_2|604727|organism=Nannochloropsis oceanica|type=CDS|length=288bp|location=Sequence derived from alignment at scaffold_30:65631..66425- (Nannochloropsis oceanica)
ATGATTATTCCCCTCTTCTTTCTGTACCTTTGTTGTCTTATTCTTCTACG
TCTGCGGTCTCTGTTTGTTGTGGCTCTGGGGTCCACGCGTGATTACATTG
GTGGGTGGCAACAGTCCCTTCTCCTCTCTCTTCCTCTCATCATAATCCTT
GCAAGTCTCATCTTGTCTTGTTTCCTTTTGCCGTCTTCTATATCTTCTCC
TCTTCTTCTCTCGTCTATCTTTTCTCACCATATATTCCATTCTCTTGTTT
CTCTCTCACCTACCACGGATGCTTGTGTGTGCGTCTAA
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Synonyms
Publications