jgi.p|Nanoce1779_2|604720, mRNA_8972 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604720
Unique NamemRNA_8972
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length850
Alignment locationscaffold_30:58082..59903 -

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Properties
Property NameValue
TranscriptId604806
TrackFilteredModels2
ProteinId604720
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:58082..59903 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604720gene_8972Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604720mRNA_8972-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8972CDS_8972Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8972 ID=mRNA_8972|Name=jgi.p|Nanoce1779_2|604720|organism=Nannochloropsis oceanica|type=mRNA|length=850bp
CTCAACGGCTTCCTCTCTTCTTTCTGTATAACCTTGTTGACATTTGTCCC
CGCAGCACAAGTTGCAGCCGTCAATGTCCTTCGAACGAGGGCAGAGGCCC
GTAGTCTTTCCTGGCAGCAACTGGAGGACGTATTTCGACAGGGAACCATT
GAAGAGGGCATCCCGGAAGGCTACTCATACGGCTACGTTTTGGTGAGCGA
TCAATGGCCGCAGGTGACGCAGCTAATATCCAATACCTTTTGGCACGGAA
AGAGGTTTGTCATTGACACCCCTACAGTAGGCCACATCACCAACGCCATG
GGCAATGGCTTGGTTAATGTCCAGACAATGCCGGGGGATCTCTACGTCGG
CCATTTGGAAGACATCCGACCAGACTTGAAGGCCATATGGCTGGTCAAGT
CAATCGCAGGGTTGACGAAATCTGTCCTGTTAATCACGAGCACGACACCC
ACCTGATCCTCCCTTCCTTTCCTCCTTCCCTCCTTCCCTCCCTCCCTCCT
TCCTTCCTTCCAGCCCTTCAACTCGACCGGAAGCCTAGCTTGATTGTCGA
TTATGGTAATGGTGGAGGTGATGAAATTCGACTCGTGAACAGCAAGAAGA
GGATCTACCTCGGCCGTGGCACGGACTGGGCCCCCGCTCCCTACGCCAAG
ATCTTTGGTTATTTCGTGCTGCAGCTTTTCGACCGGCCTCATGCTATGGA
ATTCACTGTGATGGGCGTCAGAAACCGAATGGACTTGAACGAGCGGATCG
AAGCGGCAGAGGCCGGGGAGGAGGAAGGGAGGGAGGAAGCGGGGGACGGG
CAGGTCTTCATAGTGATGGAGCCCGTCAATAAGAAGGCGATTGATCTTAC
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protein sequence of jgi.p|Nanoce1779_2|604720

>mRNA_8972-protein ID=mRNA_8972-protein|Name=jgi.p|Nanoce1779_2|604720|organism=Nannochloropsis oceanica|type=polypeptide|length=152bp
LNGFLSSFCITLLTFVPAAQVAAVNVLRTRAEARSLSWQQLEDVFRQGTI
EEGIPEGYSYGYVLVSDQWPQVTQLISNTFWHGKRFVIDTPTVGHITNAM
GNGLVNVQTMPGDLYVGHLEDIRPDLKAIWLVKSIAGLTKSVLLITSTTP
T*
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mRNA from alignment at scaffold_30:58082..59903-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8972 ID=mRNA_8972|Name=jgi.p|Nanoce1779_2|604720|organism=Nannochloropsis oceanica|type=mRNA|length=1822bp|location=Sequence derived from alignment at scaffold_30:58082..59903- (Nannochloropsis oceanica)
CTCAACGGCTTCCTCTCTTCTTTCTGTATAACCTTGTTGACATTTGTCCC
CGCAGCACAAGTTGCAGCCGTCAATGTCCTTCGAACGAGGGCAGAGGCCC
GTAGTCTTTCCTGGCAGCAACTGGAGGACGTATTTCGACAGGGAACCATT
GAAGAGGGTGAGTGAGGAGGGGACGAGAGAGGGAGGAAGGAATGTCACAG
AGGTTAGCACAAGACATGTCTTTCCTCGTCAGATTATGAATATTTACAGA
GTAACATGCTTGAAGCCACACAAAACCACTGTCCCTCGCTCATCTCCCCG
CCCTCTCTCCCACCCTCCCTCCCTGTCTCTCCCAGGCATCCCGGAAGGCT
ACTCATACGGCTACGTTTTGGTGAGCGATCAATGGCCGCAGGTGACGCAG
CTAATATCCAATACCTTTTGGCACGGAAAGAGGTTTGTCATTGACACCCC
TACAGTAGGTAAAGAGGGAGGTAGGAAGGGGGGAGGGAGGAGGGTGGGAT
TCATGGGCGAAGCATACCGCGGGGGTATGGCAAGCACTGCACCGCCTCTT
AAGTCATCCCTCTTGATGCTTTATAGCCCAGACAAAGGACGTGAGCGCAC
GTCTTTCTTAATAAGCCTCTCATCTCTTCCTTTCTAATTCCCATCCTCCT
TTCCAGGCCACATCACCAACGCCATGGGCAATGGCTTGGTTAATGTCCAG
ACAATGCCGGGGGATCTCTACGTCGGCCATTTGGAAGACATCCGACCAGA
CTTGAAGGGTAGGAGAGAGGGAGGGAAGGAGGATTGGATGGAGGGAGAGG
AGGAGAAAGACAGTTGTCGATGACCCTACTATTGGACCAGTTACTTACTT
ACCAACCCTCCCTCCCTCCCTCCCTCCCTTTCTTCCTTCCTCCCTCCCTC
TCTCATTGGCTTGATTGGAACGATCAGCCATATGGCTGGTCAAGTCAATC
GCAGGGTTGACGAAATCTGTCCTGTTAATCACGAGCACGACACCCACCTG
ATCCTCCCTTCCTTTCCTCCTTCCCTCCTTCCCTCCCTCCCTCCTTCCTT
CCTTCCAGCCCTTCAACTCGACCGGAAGCCTAGCTTGATTGTCGATTATG
GTAATGGTGGAGGTGATGAAATTCGACTCGTGAACAGCAAGAAGAGGATC
TACCTCGGCCGGTAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGA
GGGAGGGAGAAGTGGGGGACAGGAGAAGTGAGAGGGAAGGAAAACGAGGT
TGACGTGTGATTCGTTGGTTTACGTAGAGTCAATCCTCACGAGAGCGCAT
ATTCAATCAGCCACCCTTGGCCAAACTACACGCAACCACACCCTTCCTTC
CTCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTCCCTCCAGTGGCA
CGGACTGGGCCCCCGCTCCCTACGCCAAGATCTTTGGTTATTTCGTGCTG
CAGCTTTTCGACCGGCCTCATGCTATGGAATTCACTGTGATGGGTGAGGA
GGGTGGAGAGGGCGGAAGGGAGGGAGGGCGGGAAGGCGCCTTATAGGTCA
GACCTCAACAACTTTTTCCCCATTGGTTTTTTGTTTTCTTTAAAAACGTG
CTGCTGTACCCAGCGCGCATTCCCCCCTTCCTCCTTCCCACAGTATCACT
TCATTTATTCTCCTCCTCACTTTCATTCTGTCGCAGGCGTCAGAAACCGA
ATGGACTTGAACGAGCGGATCGAAGCGGCAGAGGCCGGGGAGGAGGAAGG
GAGGGAGGAAGCGGGGGACGGGCAGGTCTTCATAGTGATGGAGCCCGTCA
ATAAGAAGGCGATTGATCTTAC
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Coding sequence (CDS) from alignment at scaffold_30:58082..59903-

>mRNA_8972 ID=mRNA_8972|Name=jgi.p|Nanoce1779_2|604720|organism=Nannochloropsis oceanica|type=CDS|length=1824bp|location=Sequence derived from alignment at scaffold_30:58082..59903- (Nannochloropsis oceanica)
CCATATGGCTGGTCAAGTCAATCGCAGGGTTGACGAAATCTGTCCTGTTA
ATCACGAGCACGACACCCACCTGAGCCACATCACCAACGCCATGGGCAAT
GGCTTGGTTAATGTCCAGACAATGCCGGGGGATCTCTACGTCGGCCATTT
GGAAGACATCCGACCAGACTTGAAGGGCATCCCGGAAGGCTACTCATACG
GCTACGTTTTGGTGAGCGATCAATGGCCGCAGGTGACGCAGCTAATATCC
AATACCTTTTGGCACGGAAAGAGGTTTGTCATTGACACCCCTACAGTAGC
TCAACGGCTTCCTCTCTTCTTTCTGTATAACCTTGTTGACATTTGTCCCC
GCAGCACAAGTTGCAGCCGTCAATGTCCTTCGAACGAGGGCAGAGGCCCG
TAGTCTTTCCTGGCAGCAACTGGAGGACGTATTTCGACAGGGAACCATTG
AAGAGGCCATATGGCTGGTCAAGTCAATCGCAGGGTTGACGAAATCTGTC
CTGTTAATCACGAGCACGACACCCACCTGAGCCACATCACCAACGCCATG
GGCAATGGCTTGGTTAATGTCCAGACAATGCCGGGGGATCTCTACGTCGG
CCATTTGGAAGACATCCGACCAGACTTGAAGGGCATCCCGGAAGGCTACT
CATACGGCTACGTTTTGGTGAGCGATCAATGGCCGCAGGTGACGCAGCTA
ATATCCAATACCTTTTGGCACGGAAAGAGGTTTGTCATTGACACCCCTAC
AGTAGCTCAACGGCTTCCTCTCTTCTTTCTGTATAACCTTGTTGACATTT
GTCCCCGCAGCACAAGTTGCAGCCGTCAATGTCCTTCGAACGAGGGCAGA
GGCCCGTAGTCTTTCCTGGCAGCAACTGGAGGACGTATTTCGACAGGGAA
CCATTGAAGAGGCCATATGGCTGGTCAAGTCAATCGCAGGGTTGACGAAA
TCTGTCCTGTTAATCACGAGCACGACACCCACCTGAGCCACATCACCAAC
GCCATGGGCAATGGCTTGGTTAATGTCCAGACAATGCCGGGGGATCTCTA
CGTCGGCCATTTGGAAGACATCCGACCAGACTTGAAGGGCATCCCGGAAG
GCTACTCATACGGCTACGTTTTGGTGAGCGATCAATGGCCGCAGGTGACG
CAGCTAATATCCAATACCTTTTGGCACGGAAAGAGGTTTGTCATTGACAC
CCCTACAGTAGCTCAACGGCTTCCTCTCTTCTTTCTGTATAACCTTGTTG
ACATTTGTCCCCGCAGCACAAGTTGCAGCCGTCAATGTCCTTCGAACGAG
GGCAGAGGCCCGTAGTCTTTCCTGGCAGCAACTGGAGGACGTATTTCGAC
AGGGAACCATTGAAGAGGCCATATGGCTGGTCAAGTCAATCGCAGGGTTG
ACGAAATCTGTCCTGTTAATCACGAGCACGACACCCACCTGAGCCACATC
ACCAACGCCATGGGCAATGGCTTGGTTAATGTCCAGACAATGCCGGGGGA
TCTCTACGTCGGCCATTTGGAAGACATCCGACCAGACTTGAAGGGCATCC
CGGAAGGCTACTCATACGGCTACGTTTTGGTGAGCGATCAATGGCCGCAG
GTGACGCAGCTAATATCCAATACCTTTTGGCACGGAAAGAGGTTTGTCAT
TGACACCCCTACAGTAGCTCAACGGCTTCCTCTCTTCTTTCTGTATAACC
TTGTTGACATTTGTCCCCGCAGCACAAGTTGCAGCCGTCAATGTCCTTCG
AACGAGGGCAGAGGCCCGTAGTCTTTCCTGGCAGCAACTGGAGGACGTAT
TTCGACAGGGAACCATTGAAGAGG
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Synonyms
Publications