jgi.p|Nanoce1779_2|604716, mRNA_8970 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604716
Unique NamemRNA_8970
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length603
Alignment locationscaffold_30:51893..53144 -

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Properties
Property NameValue
TranscriptId604802
TrackFilteredModels2
ProteinId604716
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:51893..53144 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604716gene_8970Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604716mRNA_8970-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8970CDS_8970Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8970 ID=mRNA_8970|Name=jgi.p|Nanoce1779_2|604716|organism=Nannochloropsis oceanica|type=mRNA|length=603bp
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGCCGGGCTGGCCATGC
CCAAGACCCTCGACGAAGATCAATGGGTCGCCTGCGATAAGTGTGCCAAG
TGGCGTCGCCTCCCCCACCACGTGGACCTGACGAAACTTCCTGCCCGATG
GTACTGCTCCATGAACCGATGGCGTCCTGACTTCGCCTCGTGTGACGTGG
AGGAGGAGGCCTACAACCAGCAGCCCGAGCTCCTCCTCATGGACCCGGCC
GAAATCCGCGAAAAGCGTCGGGTCAAGGCCTGGATAAAGCGCCTGGAGAA
GGAAGATAAGTTTCTTTCGCGCAATCACGAGGCGCAAGAGCTCCTCCTCT
CCCGTGTCAGGGGAACCACTGACTGGGCGCAGTGCTGCAATCCCTTGTGT
GGGAAGTGGCGCCCTCTCATGCGCTCCATGGATGGTCAGGCGTTTCACAA
CCGTTTCAACATCGGCTCTCGACGGACACGGGTAAGACCTACTACCCCCA
GTCCTCCCTCTCCCTCTCTTCCTTAACTCACTAACTCACCCACTCCCTCC
CTCCCCTCACGATGTGCCCTTCAATCAACTCACCCTACCACGTTTTCCTC
CCT
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protein sequence of jgi.p|Nanoce1779_2|604716

>mRNA_8970-protein ID=mRNA_8970-protein|Name=jgi.p|Nanoce1779_2|604716|organism=Nannochloropsis oceanica|type=polypeptide|length=160bp
MPKTLDEDQWVACDKCAKWRRLPHHVDLTKLPARWYCSMNRWRPDFASCD
VEEEAYNQQPELLLMDPAEIREKRRVKAWIKRLEKEDKFLSRNHEAQELL
LSRVRGTTDWAQCCNPLCGKWRPLMRSMDGQAFHNRFNIGSRRTRVRPTT
PSPPSPSLP*
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mRNA from alignment at scaffold_30:51893..53144-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8970 ID=mRNA_8970|Name=jgi.p|Nanoce1779_2|604716|organism=Nannochloropsis oceanica|type=mRNA|length=1252bp|location=Sequence derived from alignment at scaffold_30:51893..53144- (Nannochloropsis oceanica)
GGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGGCCGGGCTGGCCATGC
CCAAGACCCTCGACGAAGATCAATGGGTCGCCTGCGATAAGTGCGTCTTC
TCCCCTCCAATGCTCCCTCCCTCCCTTCCTTCCTCCCTTCTTCCTTCCTC
TCCCGAATCGATCGATTGAAGAATCGTAAAGTCCCTTCTTAACAACCTCC
CCTCCCTCCCCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCAGGT
GTGCCAAGTGGCGTCGCCTCCCCCACCACGTGGACCTGACGAAACTTCCT
GCCCGATGGTACTGCTCCATGAACCGATGGCGGTGCGTCCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCCTCCCTCCACTTCTTCCCTGGATCCCCTAAGT
GCTCACTCCCACACCCCTCCCTCCCTCCCTCCAGTCCTGACTTCGCCTCG
TGTGACGTGGAGGAGGAGGCCTACAACCAGCAGCCCGAGCTCCTCCTCAT
GGACCCGGCCGAAATCCGCGAAAAGCGTCGGGTCAAGGTAAGGAAGCCCT
GCCTCCCTCCCTCCCTCCTCCCTCCCTTTCTCCTTCCCTCCTCCCTCCCT
TTCTCCTTCCCTCCTCCCTTCCCTCCTTCACACCCGTGAGGAGAGGAGTG
TCGAGATACATCCATTTCCCTCCCTCCTTCCCTCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTGGTGCCCCTTTACTC
TTTCCCACCCTCTCCACTCATCCCTCCCACCCTCACTTCCTCCCAGGCCT
GGATAAAGCGCCTGGAGAAGGAAGATAAGTTTCTTTCGCGCAATCACGAG
GCGCAAGAGCTCCTCCTCTCCCGTGTCAGGGGAACCACTGGTACGCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTTCCTCCCATCTTTCCTCGACCCT
TGAAGGGAAGTGCGCCGCACTCCCCTTTCGTGATTCCCTCCCTCCCTCCT
TCCCTCCCTCCTTCCCTCAGACTGGGCGCAGTGCTGCAATCCCTTGTGTG
GGAAGTGGCGCCCTCTCATGCGCTCCATGGATGGTCAGGCGTTTCACAAC
CGTTTCAACATCGGCTCTCGACGGACACGGGTAAGACCTACTACCCCCAG
TCCTCCCTCTCCCTCTCTTCCTTAACTCACTAACTCACCCACTCCCTCCC
TCCCCTCACGATGTGCCCTTCAATCAACTCACCCTACCACGTTTTCCTCC
CT
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Coding sequence (CDS) from alignment at scaffold_30:51893..53144-

>mRNA_8970 ID=mRNA_8970|Name=jgi.p|Nanoce1779_2|604716|organism=Nannochloropsis oceanica|type=CDS|length=2400bp|location=Sequence derived from alignment at scaffold_30:51893..53144- (Nannochloropsis oceanica)
ACTGGGCGCAGTGCTGCAATCCCTTGTGTGGGAAGTGGCGCCCTCTCATG
CGCTCCATGGATGGTCAGGCGTTTCACAACCGTTTCAACATCGGCTCTCG
ACGGACACGGGTAAGACCTACTACCCCCAGTCCTCCCTCTCCCTCTCTTC
CTTAAGCCTGGATAAAGCGCCTGGAGAAGGAAGATAAGTTTCTTTCGCGC
AATCACGAGGCGCAAGAGCTCCTCCTCTCCCGTGTCAGGGGAACCACTGT
CCTGACTTCGCCTCGTGTGACGTGGAGGAGGAGGCCTACAACCAGCAGCC
CGAGCTCCTCCTCATGGACCCGGCCGAAATCCGCGAAAAGCGTCGGGTCA
AGGTGTGCCAAGTGGCGTCGCCTCCCCCACCACGTGGACCTGACGAAACT
TCCTGCCCGATGGTACTGCTCCATGAACCGATGGCGATGCCCAAGACCCT
CGACGAAGATCAATGGGTCGCCTGCGATAAACTGGGCGCAGTGCTGCAAT
CCCTTGTGTGGGAAGTGGCGCCCTCTCATGCGCTCCATGGATGGTCAGGC
GTTTCACAACCGTTTCAACATCGGCTCTCGACGGACACGGGTAAGACCTA
CTACCCCCAGTCCTCCCTCTCCCTCTCTTCCTTAAGCCTGGATAAAGCGC
CTGGAGAAGGAAGATAAGTTTCTTTCGCGCAATCACGAGGCGCAAGAGCT
CCTCCTCTCCCGTGTCAGGGGAACCACTGTCCTGACTTCGCCTCGTGTGA
CGTGGAGGAGGAGGCCTACAACCAGCAGCCCGAGCTCCTCCTCATGGACC
CGGCCGAAATCCGCGAAAAGCGTCGGGTCAAGGTGTGCCAAGTGGCGTCG
CCTCCCCCACCACGTGGACCTGACGAAACTTCCTGCCCGATGGTACTGCT
CCATGAACCGATGGCGATGCCCAAGACCCTCGACGAAGATCAATGGGTCG
CCTGCGATAAACTGGGCGCAGTGCTGCAATCCCTTGTGTGGGAAGTGGCG
CCCTCTCATGCGCTCCATGGATGGTCAGGCGTTTCACAACCGTTTCAACA
TCGGCTCTCGACGGACACGGGTAAGACCTACTACCCCCAGTCCTCCCTCT
CCCTCTCTTCCTTAAGCCTGGATAAAGCGCCTGGAGAAGGAAGATAAGTT
TCTTTCGCGCAATCACGAGGCGCAAGAGCTCCTCCTCTCCCGTGTCAGGG
GAACCACTGTCCTGACTTCGCCTCGTGTGACGTGGAGGAGGAGGCCTACA
ACCAGCAGCCCGAGCTCCTCCTCATGGACCCGGCCGAAATCCGCGAAAAG
CGTCGGGTCAAGGTGTGCCAAGTGGCGTCGCCTCCCCCACCACGTGGACC
TGACGAAACTTCCTGCCCGATGGTACTGCTCCATGAACCGATGGCGATGC
CCAAGACCCTCGACGAAGATCAATGGGTCGCCTGCGATAAACTGGGCGCA
GTGCTGCAATCCCTTGTGTGGGAAGTGGCGCCCTCTCATGCGCTCCATGG
ATGGTCAGGCGTTTCACAACCGTTTCAACATCGGCTCTCGACGGACACGG
GTAAGACCTACTACCCCCAGTCCTCCCTCTCCCTCTCTTCCTTAAGCCTG
GATAAAGCGCCTGGAGAAGGAAGATAAGTTTCTTTCGCGCAATCACGAGG
CGCAAGAGCTCCTCCTCTCCCGTGTCAGGGGAACCACTGTCCTGACTTCG
CCTCGTGTGACGTGGAGGAGGAGGCCTACAACCAGCAGCCCGAGCTCCTC
CTCATGGACCCGGCCGAAATCCGCGAAAAGCGTCGGGTCAAGGTGTGCCA
AGTGGCGTCGCCTCCCCCACCACGTGGACCTGACGAAACTTCCTGCCCGA
TGGTACTGCTCCATGAACCGATGGCGATGCCCAAGACCCTCGACGAAGAT
CAATGGGTCGCCTGCGATAAACTGGGCGCAGTGCTGCAATCCCTTGTGTG
GGAAGTGGCGCCCTCTCATGCGCTCCATGGATGGTCAGGCGTTTCACAAC
CGTTTCAACATCGGCTCTCGACGGACACGGGTAAGACCTACTACCCCCAG
TCCTCCCTCTCCCTCTCTTCCTTAAGCCTGGATAAAGCGCCTGGAGAAGG
AAGATAAGTTTCTTTCGCGCAATCACGAGGCGCAAGAGCTCCTCCTCTCC
CGTGTCAGGGGAACCACTGTCCTGACTTCGCCTCGTGTGACGTGGAGGAG
GAGGCCTACAACCAGCAGCCCGAGCTCCTCCTCATGGACCCGGCCGAAAT
CCGCGAAAAGCGTCGGGTCAAGGTGTGCCAAGTGGCGTCGCCTCCCCCAC
CACGTGGACCTGACGAAACTTCCTGCCCGATGGTACTGCTCCATGAACCG
ATGGCGATGCCCAAGACCCTCGACGAAGATCAATGGGTCGCCTGCGATAA
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Synonyms
Publications