jgi.p|Nanoce1779_2|248132, mRNA_8969 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|248132
Unique Name	mRNA_8969
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2021
Alignment location	scaffold_30:46529..49383 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	248218
Track	FilteredModels2
ProteinId	248132

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_30	supercontig	scaffold_30:46529..49383 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|248132	gene_8969	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|248132	mRNA_8969-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8969	CDS_8969	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_30:46529..49383+
coding sequence from alignment at scaffold_30:46529..49383+

mRNA sequence

>mRNA_8969 ID=mRNA_8969|Name=jgi.p|Nanoce1779_2|248132|organism=Nannochloropsis oceanica|type=mRNA|length=2021bp
CAGGGAAAGGTTGGAAGGAACGTCAAGAAGCGTGCTTTTACAGAATATTC
TCCTTTCGTGATCCTATGTCCTCCTTAAAAGCGTATTCTACCTCTTTTGG
GAAACAGTCTTGCTCTTGTTCGCATCGACGTATATATACACACCTTCTCT
TATACAGGAGAATCCCTTCTATCCCCCATTATTTCCTACCTCCTCCGGCA
ACGCGAGGCTTTCGTAGCATGCCCAACACCATCCGAAAGATGTCTTGCCG
TATTCACTCAACCTTTAGCGCTTTAAATCCTTAGGATAAATGGAATATGA
TGTTTGTCTGGTGATTCTGTCGTTTCCTCACAGGCGGCAGCGCCATAAGC
CGCAAGGGCTGGAGCTACGCCATGCGAAGGACATAGCTAATTCCGGCGGT
GACAAGGCCGCCTTTTCAAAATCCAAAACCCTTTGGGCTCATGCATAGCT
TCCGTATTCCTCATTGAGATATTTCAAGCGTGGCGATGCAAGAATAAGAA
GTGCAGTTGGATACCCCTGCGATGGTGGAGTTGTCAATCGAAGACTTGGA
GCGGATGGAGGAAGAGTATGTACAGCAGCAGCAGCAAAAGCAGCAACAGC
ATCAAGAACAGAGTGGAGCCACAGCAGAAAGAGGAGAAGGGAAAGCGACA
CAGAGGGGAGGGAACGAAGCGATTGCTGTCGCTGACGAGGATGAGGACGA
GGACGAGGATGAGGACGAGGACGAGGACGAGGACGACAGAGCTATTCACT
CCACTATCTCCCCCCTAGCAGCTTTGACGGCCGCCGCAGAGGTTGGAGGA
CAAAACGGAGGTGAAGAGAAGGAGGAGAGGGGGGATGAGGGGGAGACGAA
GAGACGACAGCATGACCAGCAGGGTGTGGGCGGGGCAGATATGGAAGATT
ACGGAAGTAATATTCCCGTTCCTAGGGAGGTTGAGATTCTCCTTATGAAG
AAGAGGCGGGGCCGGCCACCGGGGAGTGGGAAATGGCAGAGGCAGCAGCA
GAGGCAGCAGCAGAAGCAGCAACAGAAGCAGAAGCAGCAGCAGGGGGAGG
AAGGACGTGAGGGGAGAGGAGAAGGAAGTGGACTAGGAGCAGAGGCGATA
GCGAAGAAGAACCGGAGGAAAGAGAAGGCGGGCCGCTGTGGAGGTGGTGG
AGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCGGGGGAAGAGAGAG
AGGAGAAAAAGAGGGATGACAGAGGGCATGCTGGGGCCCGAAAGGAGGAA
GGAGGGGGAGGAGGAGGCAGAGGGGGAAGCGGAGGAAAAGAGGAAGAAGC
GGAGGAGCATGCTAAAGAGAAGAGGGCAACTAGATGTGGTGGAGGTGGAG
GAGGAGGAAGTGGAGAAAGAGGGAGGGAAGGAAGAGGGCTCTGCGTTCTT
TGCGAGCCCCAGCAAGCGAGGGAGGAAGCGGGTCGTGCCTCCTCCCTCGG
TCTTTGCCCCCATCGTGGCCTCGGTCTCTGGCACCCACGTCTTTGCCCTG
TGTCCGCCCAGCAATTTATTACGGCAGATGGTCAGGAACAAGGCGGGCCA
CCTCTTCCGCTCCCTTCTGCAACTATTTCCCTTCCACCCCGACTGCAGCG
CCCGTGTCCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCTCGACCCC
CATCTCCTGACCACTCCCACGGACCTGCATGCCTTCCTTCCTCCCGCCCT
CCCTCGCCTCCTCCCCTTCGCCCTCTCCACCCTCCAAGCCCTCCTTTCGT
CCCTCCCTCGCACCGACACCAAGGGCAGGCAGGGAAGGAGGGAGGGAGGG
AGGCAGGGAAGGAGGGAGGGAGGGAGGGTGCTGGTGATGGAGGGAGCTAC
ACAGCAGGAATCGACCATGTCAGTGGATGATTTCTTCTCTTACTGGACGT
CCCCGGTGGATCGATTTCATCGCACTCTGGCCTTGACCCTCAGCATTCCT
CCCCCTCGTCTTCCCTTGCCGAGCTTTCTGCCCCCCCTCAAAAGACGGGC
CAAGGAGGGAGGGAGGGAGGG

protein sequence of jgi.p|Nanoce1779_2|248132

>mRNA_8969-protein ID=mRNA_8969-protein|Name=jgi.p|Nanoce1779_2|248132|organism=Nannochloropsis oceanica|type=polypeptide|length=453bp
MVELSIEDLERMEEEYVQQQQQKQQQHQEQSGATAERGEGKATQRGGNEA
IAVADEDEDEDEDEDEDEDEDDRAIHSTISPLAALTAAAEVGGQNGGEEK
EERGDEGETKRRQHDQQGVGGADMEDYGSNIPVPREVEILLMKKRRGRPP
GSGKWQRQQQRQQQKQQQKQKQQQGEEGREGRGEGSGLGAEAIAKKNRRK
EKAGRCGGGGGGGGGGGGGGGAGEEREEKKRDDRGHAGARKEEGGGGGGR
GGSGGKEEEAEEHAKEKRATRCGGGGGGGSGERGREGRGLCVLCEPQQAR
EEAGRASSLGLCPHRGLGLWHPRLCPVSAQQFITADGQEQGGPPLPLPSA
TISLPPRLQRPCPLPPSLPPSLPPRPPSPDHSHGPACLPSSRPPSPPPLR
PLHPPSPPFVPPSHRHQGQAGKEGGREAGKEGGREGAGDGGSYTAGIDHV
SG*

mRNA from alignment at scaffold_30:46529..49383+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8969 ID=mRNA_8969|Name=jgi.p|Nanoce1779_2|248132|organism=Nannochloropsis oceanica|type=mRNA|length=2855bp|location=Sequence derived from alignment at scaffold_30:46529..49383+ (Nannochloropsis oceanica)
CAGGGAAAGGTTGGAAGGAACGTCAAGAAGCGTGCTTTTACAGAATATTC
TCCTTTCGTGATCCTATGTCCTCCTTAAAAGCGTATTCTACCTCTTTTGG
GAAACAGTCTTGCTCTTGTTCGCATCGACGTATATATACACACCTTCTCT
TATACAGGAGAATCCCTTCTATCCCCCATTATTTCCTACCTCCTCCGGCA
ACGCGAGGCTTTCGTAGCATGCCCAACACCATCCGAAAGATGTCTTGCCG
TATTCACTCAACCTTTAGCGCTTTAAATCCTTAGGATAAATGGAATATGA
TGTTTGTCTGGTGATTCTGTCGTTTCCTCACAGGCGGCAGCGCCATAAGC
CGCAAGGGCTGGAGCTACGCCATGCGAAGGACATAGCTAATTCCGGCGGT
GACAAGGCCGCCTTTTCAAAATCCAAAACCCTTTGGGCTCATGCATAGCT
TCCGTATTCCTCATTGAGATATTTCAAGCGTGGCGATGGTGCGTTGAAAG
CCTTACAAAACATAAAAAACCAAAGACATGAGGGGCACAAAAGGCCGCTG
CTCCAACTGGGCACGCAAACGGCTGGGATGAGAAAGATGGATACACTTGG
GCACACCATCCACACACACTGACCCTGAACGCTCTCCCACATATTGACAG
CAAGAATAAGAAGTGCAGTTGGATACCCCTGCGATGGTGGAGTTGGTACG
TGGGTGTCCATTTAATGATGGTGGAAATGAACGCCACCAGGTGTTTCTCT
AACCATCATCTTCGAACCAGGCACGGAGCTGAGCAAGGCATTCTGTACCT
ATGTCTTTCCCTACCTACTTGGTGCCCCTCTCTCTCTATTCCTTCATATT
ACCTGTACTTAGGGAGGGCCTGCGCCCTTGAGTGATTGGAAATGCGACAA
GAGAAAAAAGCCGGGCAGCAGCTTACCTCCCCAACCTTCTTCCTTCCCTC
CCTCCCTCCTTCCCTCCCCACCCTGATAACCTCCTCACAGTCAATCGAAG
ACTTGGAGCGGATGGAGGAAGAGTATGTACAGCAGCAGCAGCAAAAGCAG
CAACAGCATCAAGAACAGAGTGGAGCCACAGCAGAAAGAGGAGAAGGGAA
AGCGACACAGAGGGGAGGGAACGAAGCGATTGCTGTCGCTGACGAGGATG
AGGACGAGGACGAGGATGAGGACGAGGACGAGGACGAGGACGACAGAGCT
ATTCACTCCACTATCTCCCCCCTAGCAGCTTTGACGGCCGCCGCAGAGGT
TGGAGGACAAAACGGAGGTGAAGAGAAGGAGGAGAGGGGGGATGAGGGGG
AGACGAAGAGACGACAGCATGACCAGCAGGGTGTGGGCGGGGCAGATATG
GAAGATTACGGAAGTAATATTCCCGTTCCTAGGGAGGTTGAGATTCTCCT
TATGAAGAAGAGGCGGGGCCGGCCACCGGGGAGTGGGAAATGGCAGAGGC
AGCAGCAGAGGCAGCAGCAGAAGCAGCAACAGAAGCAGAAGCAGCAGCAG
GGGGAGGAAGGACGTGAGGGGAGAGGAGAAGGAAGTGGACTAGGAGCAGA
GGCGATAGCGAAGAAGAACCGGAGGAAAGAGAAGGCGGGCCGCTGTGGAG
GTGGTGGAGGTGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCGGGGGAA
GAGAGAGAGGAGAAAAAGAGGGATGACAGAGGGCATGCTGGGGCCCGAAA
GGAGGAAGGAGGGGGAGGAGGAGGCAGAGGGGGAAGCGGAGGAAAAGAGG
AAGAAGCGGAGGAGCATGCTAAAGAGAAGAGGGCAACTAGATGTGGTGGA
GGTGGAGGAGGAGGAAGTGGAGAAAGAGGGAGGGAAGGAAGAGGGCTCTG
CGTTCTTTGCGAGCCCCAGCAAGCGAGGGAGGAAGCGGGTCGTGCCTCCT
CCCTCGGTCTTTGCCCCCATCGTGGCCTCGGTCTCTGGCACCCACGTCTT
TGCCCTGTGTCCGCCCAGCAATTTATTACGGCAGATGGTACGTCTCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCTTCCCTCATAG
CCTCGCTCCCCCACACTCACCCATTTTCGCCTCCTCCCCTCCCTCCCCTC
CCTTTCCCCCCTCCTGACAGGTCAGGAACAAGGCGGGCCACCTCTTCCGC
TCCCTTCTGCAACTATTTCCCTTCCACCCCGACTGCAGCGCCCGTGTCCC
CTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCTCGACCCCCATCTCCTGA
CCACTCCCACGGACCTGCATGCCTTCCTTCCTCCCGCCCTCCCTCGCCTC
CTCCCCTTCGCCCTCTCCACCCTCCAAGCCCTCCTTTCGTCCCTCCCTCG
CACCGACACCAAGGGCAGGCAGGGAAGGAGGGAGGGAGGGAGGCAGGGAA
GGAGGGAGGGAGGGAGGGTGCTGGTGATGGAGGGAGCTACACAGCAGGAA
TCGACCATGTCAGTGGATGATTTCTTCTCTTACTGGACGTCCCCGGTGGA
TCGATTTCATCGCACTCTGGCCTTGACCCTCAGGTGGGTGCCCTTCCCTC
CCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCCTCCCTTCC
TTCCTTCCTCCCTCCCCTGTTGCAGACTCTTAGGTTGCCGTCTACTCTCT
CTTTCTCCCCTTGACCTCTTCGCCTTCACTTCCCTCCCACCAGCCCTGGC
CAAAATAAACATAAGAGATTGTCTTTATCCACTTATATCACCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCAGCATTCCTCCCCCTCGTCTTCCCT
TGCCGAGCTTTCTGCCCCCCCTCAAAAGACGGGCCAAGGAGGGAGGGAGG
GAGGG

Coding sequence (CDS) from alignment at scaffold_30:46529..49383+

>mRNA_8969 ID=mRNA_8969|Name=jgi.p|Nanoce1779_2|248132|organism=Nannochloropsis oceanica|type=CDS|length=4077bp|location=Sequence derived from alignment at scaffold_30:46529..49383+ (Nannochloropsis oceanica)
ATGGTGGAGTTGTCAATCGAAGACTTGGAGCGGATGGAGGAAGAGTATGT
ACAGCAGCAGCAGCAAAAGCAGCAACAGCATCAAGAACAGAGTGGAGCCA
CAGCAGAAAGAGGAGAAGGGAAAGCGACACAGAGGGGAGGGAACGAAGCG
ATTGCTGTCGCTGACGAGGATGAGGACGAGGACGAGGATGAGGACGAGGA
CGAGGACGAGGACGACAGAGCTATTCACTCCACTATCTCCCCCCTAGCAG
CTTTGACGGCCGCCGCAGAGGTTGGAGGACAAAACGGAGGTGAAGAGAAG
GAGGAGAGGGGGGATGAGGGGGAGACGAAGAGACGACAGCATGACCAGCA
GGGTGTGGGCGGGGCAGATATGGAAGATTACGGAAGTAATATTCCCGTTC
CTAGGGAGGTTGAGATTCTCCTTATGAAGAAGAGGCGGGGCCGGCCACCG
GGGAGTGGGAAATGGCAGAGGCAGCAGCAGAGGCAGCAGCAGAAGCAGCA
ACAGAAGCAGAAGCAGCAGCAGGGGGAGGAAGGACGTGAGGGGAGAGGAG
AAGGAAGTGGACTAGGAGCAGAGGCGATAGCGAAGAAGAACCGGAGGAAA
GAGAAGGCGGGCCGCTGTGGAGGTGGTGGAGGTGGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGCGGGGGAAGAGAGAGAGGAGAAAAAGAGGGATGACA
GAGGGCATGCTGGGGCCCGAAAGGAGGAAGGAGGGGGAGGAGGAGGCAGA
GGGGGAAGCGGAGGAAAAGAGGAAGAAGCGGAGGAGCATGCTAAAGAGAA
GAGGGCAACTAGATGTGGTGGAGGTGGAGGAGGAGGAAGTGGAGAAAGAG
GGAGGGAAGGAAGAGGGCTCTGCGTTCTTTGCGAGCCCCAGCAAGCGAGG
GAGGAAGCGGGTCGTGCCTCCTCCCTCGGTCTTTGCCCCCATCGTGGCCT
CGGTCTCTGGCACCCACGTCTTTGCCCTGTGTCCGCCCAGCAATTTATTA
CGGCAGATGGTCAGGAACAAGGCGGGCCACCTCTTCCGCTCCCTTCTGCA
ACTATTTCCCTTCCACCCCGACTGCAGCGCCCGTGTCCCCTCCCTCCCTC
CCTCCCTCCTTCCCTCCCTCCTCGACCCCCATCTCCTGACCACTCCCACG
GACCTGCATGCCTTCCTTCCTCCCGCCCTCCCTCGCCTCCTCCCCTTCGC
CCTCTCCACCCTCCAAGCCCTCCTTTCGTCCCTCCCTCGCACCGACACCA
AGGGCAGGCAGGGAAGGAGGGAGGGAGGGAGGCAGGGAAGGAGGGAGGGA
GGGAGGGTGCTGGTGATGGAGGGAGCTACACAGCAGGAATCGACCATGTC
AGTGGATGAATGGTGGAGTTGTCAATCGAAGACTTGGAGCGGATGGAGGA
AGAGTATGTACAGCAGCAGCAGCAAAAGCAGCAACAGCATCAAGAACAGA
GTGGAGCCACAGCAGAAAGAGGAGAAGGGAAAGCGACACAGAGGGGAGGG
AACGAAGCGATTGCTGTCGCTGACGAGGATGAGGACGAGGACGAGGATGA
GGACGAGGACGAGGACGAGGACGACAGAGCTATTCACTCCACTATCTCCC
CCCTAGCAGCTTTGACGGCCGCCGCAGAGGTTGGAGGACAAAACGGAGGT
GAAGAGAAGGAGGAGAGGGGGGATGAGGGGGAGACGAAGAGACGACAGCA
TGACCAGCAGGGTGTGGGCGGGGCAGATATGGAAGATTACGGAAGTAATA
TTCCCGTTCCTAGGGAGGTTGAGATTCTCCTTATGAAGAAGAGGCGGGGC
CGGCCACCGGGGAGTGGGAAATGGCAGAGGCAGCAGCAGAGGCAGCAGCA
GAAGCAGCAACAGAAGCAGAAGCAGCAGCAGGGGGAGGAAGGACGTGAGG
GGAGAGGAGAAGGAAGTGGACTAGGAGCAGAGGCGATAGCGAAGAAGAAC
CGGAGGAAAGAGAAGGCGGGCCGCTGTGGAGGTGGTGGAGGTGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGCGGGGGAAGAGAGAGAGGAGAAAAAGA
GGGATGACAGAGGGCATGCTGGGGCCCGAAAGGAGGAAGGAGGGGGAGGA
GGAGGCAGAGGGGGAAGCGGAGGAAAAGAGGAAGAAGCGGAGGAGCATGC
TAAAGAGAAGAGGGCAACTAGATGTGGTGGAGGTGGAGGAGGAGGAAGTG
GAGAAAGAGGGAGGGAAGGAAGAGGGCTCTGCGTTCTTTGCGAGCCCCAG
CAAGCGAGGGAGGAAGCGGGTCGTGCCTCCTCCCTCGGTCTTTGCCCCCA
TCGTGGCCTCGGTCTCTGGCACCCACGTCTTTGCCCTGTGTCCGCCCAGC
AATTTATTACGGCAGATGGTCAGGAACAAGGCGGGCCACCTCTTCCGCTC
CCTTCTGCAACTATTTCCCTTCCACCCCGACTGCAGCGCCCGTGTCCCCT
CCCTCCCTCCCTCCCTCCTTCCCTCCCTCCTCGACCCCCATCTCCTGACC
ACTCCCACGGACCTGCATGCCTTCCTTCCTCCCGCCCTCCCTCGCCTCCT
CCCCTTCGCCCTCTCCACCCTCCAAGCCCTCCTTTCGTCCCTCCCTCGCA
CCGACACCAAGGGCAGGCAGGGAAGGAGGGAGGGAGGGAGGCAGGGAAGG
AGGGAGGGAGGGAGGGTGCTGGTGATGGAGGGAGCTACACAGCAGGAATC
GACCATGTCAGTGGATGAATGGTGGAGTTGTCAATCGAAGACTTGGAGCG
GATGGAGGAAGAGTATGTACAGCAGCAGCAGCAAAAGCAGCAACAGCATC
AAGAACAGAGTGGAGCCACAGCAGAAAGAGGAGAAGGGAAAGCGACACAG
AGGGGAGGGAACGAAGCGATTGCTGTCGCTGACGAGGATGAGGACGAGGA
CGAGGATGAGGACGAGGACGAGGACGAGGACGACAGAGCTATTCACTCCA
CTATCTCCCCCCTAGCAGCTTTGACGGCCGCCGCAGAGGTTGGAGGACAA
AACGGAGGTGAAGAGAAGGAGGAGAGGGGGGATGAGGGGGAGACGAAGAG
ACGACAGCATGACCAGCAGGGTGTGGGCGGGGCAGATATGGAAGATTACG
GAAGTAATATTCCCGTTCCTAGGGAGGTTGAGATTCTCCTTATGAAGAAG
AGGCGGGGCCGGCCACCGGGGAGTGGGAAATGGCAGAGGCAGCAGCAGAG
GCAGCAGCAGAAGCAGCAACAGAAGCAGAAGCAGCAGCAGGGGGAGGAAG
GACGTGAGGGGAGAGGAGAAGGAAGTGGACTAGGAGCAGAGGCGATAGCG
AAGAAGAACCGGAGGAAAGAGAAGGCGGGCCGCTGTGGAGGTGGTGGAGG
TGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGCGGGGGAAGAGAGAGAGG
AGAAAAAGAGGGATGACAGAGGGCATGCTGGGGCCCGAAAGGAGGAAGGA
GGGGGAGGAGGAGGCAGAGGGGGAAGCGGAGGAAAAGAGGAAGAAGCGGA
GGAGCATGCTAAAGAGAAGAGGGCAACTAGATGTGGTGGAGGTGGAGGAG
GAGGAAGTGGAGAAAGAGGGAGGGAAGGAAGAGGGCTCTGCGTTCTTTGC
GAGCCCCAGCAAGCGAGGGAGGAAGCGGGTCGTGCCTCCTCCCTCGGTCT
TTGCCCCCATCGTGGCCTCGGTCTCTGGCACCCACGTCTTTGCCCTGTGT
CCGCCCAGCAATTTATTACGGCAGATGGTCAGGAACAAGGCGGGCCACCT
CTTCCGCTCCCTTCTGCAACTATTTCCCTTCCACCCCGACTGCAGCGCCC
GTGTCCCCTCCCTCCCTCCCTCCCTCCTTCCCTCCCTCCTCGACCCCCAT
CTCCTGACCACTCCCACGGACCTGCATGCCTTCCTTCCTCCCGCCCTCCC
TCGCCTCCTCCCCTTCGCCCTCTCCACCCTCCAAGCCCTCCTTTCGTCCC
TCCCTCGCACCGACACCAAGGGCAGGCAGGGAAGGAGGGAGGGAGGGAGG
CAGGGAAGGAGGGAGGGAGGGAGGGTGCTGGTGATGGAGGGAGCTACACA
GCAGGAATCGACCATGTCAGTGGATGA

Synonyms

Publications