jgi.p|Nanoce1779_2|604708, mRNA_8968 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604708
Unique NamemRNA_8968
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1454
Alignment locationscaffold_30:45162..46809 +

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Properties
Property NameValue
TranscriptId604794
TrackFilteredModels2
ProteinId604708
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:45162..46809 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604708gene_8968Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604708mRNA_8968-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8968CDS_8968Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8968 ID=mRNA_8968|Name=jgi.p|Nanoce1779_2|604708|organism=Nannochloropsis oceanica|type=mRNA|length=1454bp
CCGTCACAGATCCCTCTTCTACCACTGCTGCTATTCCTGCTACTGCTGCT
GCTGCTGCCGCCACCAGGAGCAGAGGCACCCCGGCCTTCCTCCCCTTCGT
CCTCCTCCTCCTTAACCTTTATTGGACCTCCCACCTGCTCCGCAAGACAC
TCCACGTCCTCCTCTCGGGCTCGGTGACCCGTTGGTTCTACAGTGCGCTC
GAGGGAGGGGGGGAAGAAGAGAGGGAGGGAGGGAGGGACCGAAGGAGGAC
GAGAAGTAGCATCACCCAAGAAGCGGGAGGATTTGAATATGACCGGACCA
AGAACCCGTTTTATGATGATGATGATGATGATCATGAGGAGGAGGAGGAG
CAGGGAGAGAATGACGTAGAAGGTGAGTTGCATAAGGGCTTCATGCTGTC
GGAGCAGCAGCAGCAGCAGGAGGTTCAGCAAGGCAGGAAAATCAGGCAGC
GACGTGGTAGCCCCACAGGGATGACGGTTGACATTTACGGGGACGACGGG
CCTGACGAGGACAGCAGCGACAGCCCTCCCTCCCCCCCGCCCTTCTCCTC
CTCCAACTTGTCGGGGGAAGTCCTCCTGCATCACCTGGCCTGTGCCCTCA
GCGTGTCCTTGGGCTCTCTGTGCCAGGCCGCTTTTTGTTGCCCCCTGGCC
CACGCGCTCTGGGCTTGGCAAGGCTACACGGTTTCCCACCAAGACTCGGA
CATGCACACCATGCCCACGGCGGTCAGCCACCGCCCGACCTCGCATTCTT
TCGTGCCGTCTGCTTCTTTGGCCTCGACCTTGCCCTCCCACGCGGCCTCG
AGACAGCGTGGGGGAGGGGGAGGAAGAACTGCAGGCGGGAAGCTCCCCTC
GTCCTCCCCCTCGTCCTCCCCCTCCTCTTGCCCCTCCTCCTTCATCCGCA
CGCACCACCCTCTCGCCCTCGTCCACGTGGCAGCCTACAAGAAATCTTTT
TCCACCGCCGCCCGCGACGTGTGGACCCTCCTCGTCGCTGCCGGCCTCGA
CTCGATCCTCCGTACCGATGCTTTGTCACACACCCTCCACGCACTGGGCA
CCACAGCCGGGTGCTTGACCGCACTTATGTCCCTCCTCCTCTTTGGTACT
GGTGCGGGGGTGGGAGTTGCCGTGGTCTTGCCCGGTGCCCTGGCGTACAT
CTTGGTAATGACGGCCTTGGAACCCCTGCTCGCCACGGTTAATGCGGCTT
ACGTGAGCTTCGCGGAGACCCCGGCTTTGGTGTCGCAGACCTTCCCGTTG
ATCTTCCACCGCTTGGATCGCATTGCGGAGGTGCGAAATTTTTGAGCAAG
CCTGGGAAGGAGGAAAGAATGGAGAGAAGAAGGCTGCTAAAATGCATTGT
CAAAAGGAATGTCTCCTCCGGCAACGCGAGGCTTTCGTAGCATGCCCAAC
ACCATCCGAAAGATGTCTTGCCGTATTCACTCAACCTTTAGCGCTTTAAA
TCCT
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protein sequence of jgi.p|Nanoce1779_2|604708

>mRNA_8968-protein ID=mRNA_8968-protein|Name=jgi.p|Nanoce1779_2|604708|organism=Nannochloropsis oceanica|type=polypeptide|length=301bp
MLSEQQQQQEVQQGRKIRQRRGSPTGMTVDIYGDDGPDEDSSDSPPSPPP
FSSSNLSGEVLLHHLACALSVSLGSLCQAAFCCPLAHALWAWQGYTVSHQ
DSDMHTMPTAVSHRPTSHSFVPSASLASTLPSHAASRQRGGGGGRTAGGK
LPSSSPSSSPSSCPSSFIRTHHPLALVHVAAYKKSFSTAARDVWTLLVAA
GLDSILRTDALSHTLHALGTTAGCLTALMSLLLFGTGAGVGVAVVLPGAL
AYILVMTALEPLLATVNAAYVSFAETPALVSQTFPLIFHRLDRIAEVRNF
*
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mRNA from alignment at scaffold_30:45162..46809+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8968 ID=mRNA_8968|Name=jgi.p|Nanoce1779_2|604708|organism=Nannochloropsis oceanica|type=mRNA|length=1648bp|location=Sequence derived from alignment at scaffold_30:45162..46809+ (Nannochloropsis oceanica)
CCGTCACAGATCCCTCTTCTACCACTGCTGCTATTCCTGCTACTGCTGCT
GCTGCTGCCGCCACCAGGAGCAGAGGCACCCCGGCCTTCCTCCCCTTCGT
CCTCCTCCTCCTTAACCTTTATTGGACCTCCCACCTGCTCCGCAAGACAC
TCCACGTCCTCCTCTCGGGCTCGGTGACCCGTTGGTTCTACAGTGCGCTC
GAGGGAGGGGGGGAAGAAGAGAGGGAGGGAGGGAGGGACCGAAGGAGGAC
GAGAAGTAGCATCACCCAAGAAGCGGGAGGATTTGAATATGACCGGACCA
AGAACCCGTTTTATGATGATGATGATGATGATCATGAGGAGGAGGAGGAG
CAGGGAGAGAATGACGTAGAAGGTGAGTTGCATAAGGGCTTCATGCTGTC
GGAGCAGCAGCAGCAGCAGGAGGTTCAGCAAGGCAGGAAAATCAGGCAGC
GACGTGGTAGCCCCACAGGGATGACGGTTGACATTTACGGGGACGACGGG
CCTGACGAGGACAGCAGCGACAGCCCTCCCTCCCCCCCGCCCTTCTCCTC
CTCCAACTTGTCGGGGGAAGTCCTCCTGCATCACCTGGCCTGTGCCCTCA
GCGTGTCCTTGGGCTCTCTGTGCCAGGCCGCTTTTTGTTGCCCCCTGGCC
CACGCGCTCTGGGCTTGGCAAGGCTACACGGTTTCCCACCAAGACTCGGA
CATGCACACCATGCCCACGGCGGTCAGCCACCGCCCGACCTCGCATTCTT
TCGTGCCGTCTGCTTCTTTGGCCTCGACCTTGCCCTCCCACGCGGCCTCG
AGACAGCGTGGGGGAGGGGGAGGAAGAACTGCAGGCGGGAAGCTCCCCTC
GTCCTCCCCCTCGTCCTCCCCCTCCTCTTGCCCCTCCTCCTTCATCCGCA
CGCACCACCCTCTCGCCCTCGTCCACGTGGCAGCCTACAAGAAATCTTTT
TCCACCGCCGCCCGCGACGTGTGGACCCTCCTCGTCGCTGCCGGCCTCGA
CTCGATCCTCCGTACCGATGCTTTGTCACACACCCTCCACGCACTGGGCA
CCACAGCCGGGTGCTTGACCGCACTTATGTCCCTCCTCCTCTTTGGTACT
GGTGCGGGGGTGGGAGTTGCCGTGGTCTTGCCCGGTGCCCTGGCGTACAT
CTTGGTAATGACGGCCTTGGAACCCCTGCTCGCCACGGTTAATGCGGCTT
ACGTGAGCTTCGCGGAGACCCCGGCTTTGGTGTCGCAGACCTTCCCGTTG
ATCTTCCACCGCTTGGATCGCATTGCGGAGGTGCGAAATTTTTGAGCAAG
CCTGGGAAGGAGGAAAGAATGGAGAGAAGAAGGCTGCTAAAATGCATTGT
CAAAAGGAATGTCTGTACAGGGAAAGGTTGGAAGGAACGTCAAGAAGCGT
GCTTTTACAGAATATTCTCCTTTCGTGATCCTATGTCCTCCTTAAAAGCG
TATTCTACCTCTTTTGGGAAACAGTCTTGCTCTTGTTCGCATCGACGTAT
ATATACACACCTTCTCTTATACAGGAGAATCCCTTCTATCCCCCATTATT
TCCTACCTCCTCCGGCAACGCGAGGCTTTCGTAGCATGCCCAACACCATC
CGAAAGATGTCTTGCCGTATTCACTCAACCTTTAGCGCTTTAAATCCT
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Coding sequence (CDS) from alignment at scaffold_30:45162..46809+

>mRNA_8968 ID=mRNA_8968|Name=jgi.p|Nanoce1779_2|604708|organism=Nannochloropsis oceanica|type=CDS|length=903bp|location=Sequence derived from alignment at scaffold_30:45162..46809+ (Nannochloropsis oceanica)
ATGCTGTCGGAGCAGCAGCAGCAGCAGGAGGTTCAGCAAGGCAGGAAAAT
CAGGCAGCGACGTGGTAGCCCCACAGGGATGACGGTTGACATTTACGGGG
ACGACGGGCCTGACGAGGACAGCAGCGACAGCCCTCCCTCCCCCCCGCCC
TTCTCCTCCTCCAACTTGTCGGGGGAAGTCCTCCTGCATCACCTGGCCTG
TGCCCTCAGCGTGTCCTTGGGCTCTCTGTGCCAGGCCGCTTTTTGTTGCC
CCCTGGCCCACGCGCTCTGGGCTTGGCAAGGCTACACGGTTTCCCACCAA
GACTCGGACATGCACACCATGCCCACGGCGGTCAGCCACCGCCCGACCTC
GCATTCTTTCGTGCCGTCTGCTTCTTTGGCCTCGACCTTGCCCTCCCACG
CGGCCTCGAGACAGCGTGGGGGAGGGGGAGGAAGAACTGCAGGCGGGAAG
CTCCCCTCGTCCTCCCCCTCGTCCTCCCCCTCCTCTTGCCCCTCCTCCTT
CATCCGCACGCACCACCCTCTCGCCCTCGTCCACGTGGCAGCCTACAAGA
AATCTTTTTCCACCGCCGCCCGCGACGTGTGGACCCTCCTCGTCGCTGCC
GGCCTCGACTCGATCCTCCGTACCGATGCTTTGTCACACACCCTCCACGC
ACTGGGCACCACAGCCGGGTGCTTGACCGCACTTATGTCCCTCCTCCTCT
TTGGTACTGGTGCGGGGGTGGGAGTTGCCGTGGTCTTGCCCGGTGCCCTG
GCGTACATCTTGGTAATGACGGCCTTGGAACCCCTGCTCGCCACGGTTAA
TGCGGCTTACGTGAGCTTCGCGGAGACCCCGGCTTTGGTGTCGCAGACCT
TCCCGTTGATCTTCCACCGCTTGGATCGCATTGCGGAGGTGCGAAATTTT
TGA
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Synonyms
Publications