jgi.p|Nanoce1779_2|673788, mRNA_8963 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|673788
Unique NamemRNA_8963
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1280
Alignment locationscaffold_30:21390..22669 +

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Properties
Property NameValue
TranscriptId673874
TrackFilteredModels2
ProteinId673788
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:21390..22669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673788gene_8963Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|673788mRNA_8963-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8963CDS_8963Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8963 ID=mRNA_8963|Name=jgi.p|Nanoce1779_2|673788|organism=Nannochloropsis oceanica|type=mRNA|length=1280bp
TTTTCGGAAAGAAGACGTGGCTGTCATGGCAGATAATATAACTTGGCTGT
GGGTCACCGTCTCGAGTTCTTCACGCTCCATTCTCATCCCACAAAAAACA
ACACTTTTTGTTCCACAGCGCACACATCAAGGCGATTCATCTTTTTCCAT
CTTCTTTTCGACACCACCATCAAAGCACCCAGAACATGCAGCACAACCAC
CATGACTCGGTACGGCCTTCATTCTTTTCCCTTGGCCCGTCTCCTTCGCC
CCCGCTTCATTCTCCTTCCGCGCAGCACAAGCAGATGCGAAAGCACAGGA
AGCAGCAGCGACATTGGCATCCGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGGAGCAGCAGGAGCAGCAGCAACAGCAGCAGCAAG
AGCAACAACAACAGAAGAATTTACAGCCTGAATCTCCACTTATCCCTCTA
CTACCTTCTCCAGAACAGCCTGGATATTCTCTTTCTTCCATCTCTTCGAT
CTTCTCCTCTCCCTTTTTTGGGTCCTTCTCCAGCTCCTCATCCTCCGCCT
CTTCCATCCCTCGCTTTCCGCACCATAAGCAAGAACAGCATTGCCGTAAG
CAGGAACAGCAGCAATATTTTCCTCCTCCTGCGAGCCACTACAGAGAGAG
GGTAGGAGAGTGGAAGGGTGAGGTCCTCGAAAAGGGGGAAAAGGAGGAAG
AGGAGGAGAGTGACGATGACCTTGTACAGAGTTATGGGCCGTCATTCAAC
AAGAGAGGGAGGGATGAAGGGGCGCGAGAAAGGCTGGCGAAGAAGAAGAA
GACAAAGAAGGTGGAGGAGGAAAAAGTAGAGGAGGAGGAGGAAAAGGAGG
AGAAGGAAAAGGAGGAGGAAGGCAACGAGGACGATCTTATACCAGCGCTC
GAGAGGGAGCTGCGTGATAGAGAGGAGGGAGGAAAGGAGAAAGGGAATGA
ACTAAGGAAAGACAAGAAAGAGAAGGAGAAGAAGGGAGATTGGGGAGAAG
AGAAGGAGGAAGGGAACATGGAGAGGGAGGCGGCGGCTGTGTTCGCCTTT
GCAGCCAAGATGCGCGCGTGGGAGCGCTGGGAAGGGGTAATCCTCCTCGC
ATCGCCCTGGAAAAAGGGTCGGGAATTGGGGGGGGAAGAAAGAAATAAGA
GTGTGATGGGGGAAAAAGAAAGGAATAAGAGTGTGATGGAGGAGGAGGAG
GAGGAGTGGGGCATGCGGACAAGAAGATAA
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protein sequence of jgi.p|Nanoce1779_2|673788

>mRNA_8963-protein ID=mRNA_8963-protein|Name=jgi.p|Nanoce1779_2|673788|organism=Nannochloropsis oceanica|type=polypeptide|length=365bp
MQHNHHDSVRPSFFSLGPSPSPPLHSPSAQHKQMRKHRKQQRHWHPQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQEQQEQQQQQQQEQQQQKNLQPES
PLIPLLPSPEQPGYSLSSISSIFSSPFFGSFSSSSSSASSIPRFPHHKQE
QHCRKQEQQQYFPPPASHYRERVGEWKGEVLEKGEKEEEEESDDDLVQSY
GPSFNKRGRDEGARERLAKKKKTKKVEEEKVEEEEEKEEKEKEEEGNEDD
LIPALERELRDREEGGKEKGNELRKDKKEKEKKGDWGEEKEEGNMEREAA
AVFAFAAKMRAWERWEGVILLASPWKKGRELGGEERNKSVMGEKERNKSV
MEEEEEEWGMRTRR*
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mRNA from alignment at scaffold_30:21390..22669+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8963 ID=mRNA_8963|Name=jgi.p|Nanoce1779_2|673788|organism=Nannochloropsis oceanica|type=mRNA|length=1280bp|location=Sequence derived from alignment at scaffold_30:21390..22669+ (Nannochloropsis oceanica)
TTTTCGGAAAGAAGACGTGGCTGTCATGGCAGATAATATAACTTGGCTGT
GGGTCACCGTCTCGAGTTCTTCACGCTCCATTCTCATCCCACAAAAAACA
ACACTTTTTGTTCCACAGCGCACACATCAAGGCGATTCATCTTTTTCCAT
CTTCTTTTCGACACCACCATCAAAGCACCCAGAACATGCAGCACAACCAC
CATGACTCGGTACGGCCTTCATTCTTTTCCCTTGGCCCGTCTCCTTCGCC
CCCGCTTCATTCTCCTTCCGCGCAGCACAAGCAGATGCGAAAGCACAGGA
AGCAGCAGCGACATTGGCATCCGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGGAGCAGCAGGAGCAGCAGCAACAGCAGCAGCAAG
AGCAACAACAACAGAAGAATTTACAGCCTGAATCTCCACTTATCCCTCTA
CTACCTTCTCCAGAACAGCCTGGATATTCTCTTTCTTCCATCTCTTCGAT
CTTCTCCTCTCCCTTTTTTGGGTCCTTCTCCAGCTCCTCATCCTCCGCCT
CTTCCATCCCTCGCTTTCCGCACCATAAGCAAGAACAGCATTGCCGTAAG
CAGGAACAGCAGCAATATTTTCCTCCTCCTGCGAGCCACTACAGAGAGAG
GGTAGGAGAGTGGAAGGGTGAGGTCCTCGAAAAGGGGGAAAAGGAGGAAG
AGGAGGAGAGTGACGATGACCTTGTACAGAGTTATGGGCCGTCATTCAAC
AAGAGAGGGAGGGATGAAGGGGCGCGAGAAAGGCTGGCGAAGAAGAAGAA
GACAAAGAAGGTGGAGGAGGAAAAAGTAGAGGAGGAGGAGGAAAAGGAGG
AGAAGGAAAAGGAGGAGGAAGGCAACGAGGACGATCTTATACCAGCGCTC
GAGAGGGAGCTGCGTGATAGAGAGGAGGGAGGAAAGGAGAAAGGGAATGA
ACTAAGGAAAGACAAGAAAGAGAAGGAGAAGAAGGGAGATTGGGGAGAAG
AGAAGGAGGAAGGGAACATGGAGAGGGAGGCGGCGGCTGTGTTCGCCTTT
GCAGCCAAGATGCGCGCGTGGGAGCGCTGGGAAGGGGTAATCCTCCTCGC
ATCGCCCTGGAAAAAGGGTCGGGAATTGGGGGGGGAAGAAAGAAATAAGA
GTGTGATGGGGGAAAAAGAAAGGAATAAGAGTGTGATGGAGGAGGAGGAG
GAGGAGTGGGGCATGCGGACAAGAAGATAA
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Coding sequence (CDS) from alignment at scaffold_30:21390..22669+

>mRNA_8963 ID=mRNA_8963|Name=jgi.p|Nanoce1779_2|673788|organism=Nannochloropsis oceanica|type=CDS|length=1095bp|location=Sequence derived from alignment at scaffold_30:21390..22669+ (Nannochloropsis oceanica)
ATGCAGCACAACCACCATGACTCGGTACGGCCTTCATTCTTTTCCCTTGG
CCCGTCTCCTTCGCCCCCGCTTCATTCTCCTTCCGCGCAGCACAAGCAGA
TGCGAAAGCACAGGAAGCAGCAGCGACATTGGCATCCGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGGAGCAGCAGGAGCAGCAGC
AACAGCAGCAGCAAGAGCAACAACAACAGAAGAATTTACAGCCTGAATCT
CCACTTATCCCTCTACTACCTTCTCCAGAACAGCCTGGATATTCTCTTTC
TTCCATCTCTTCGATCTTCTCCTCTCCCTTTTTTGGGTCCTTCTCCAGCT
CCTCATCCTCCGCCTCTTCCATCCCTCGCTTTCCGCACCATAAGCAAGAA
CAGCATTGCCGTAAGCAGGAACAGCAGCAATATTTTCCTCCTCCTGCGAG
CCACTACAGAGAGAGGGTAGGAGAGTGGAAGGGTGAGGTCCTCGAAAAGG
GGGAAAAGGAGGAAGAGGAGGAGAGTGACGATGACCTTGTACAGAGTTAT
GGGCCGTCATTCAACAAGAGAGGGAGGGATGAAGGGGCGCGAGAAAGGCT
GGCGAAGAAGAAGAAGACAAAGAAGGTGGAGGAGGAAAAAGTAGAGGAGG
AGGAGGAAAAGGAGGAGAAGGAAAAGGAGGAGGAAGGCAACGAGGACGAT
CTTATACCAGCGCTCGAGAGGGAGCTGCGTGATAGAGAGGAGGGAGGAAA
GGAGAAAGGGAATGAACTAAGGAAAGACAAGAAAGAGAAGGAGAAGAAGG
GAGATTGGGGAGAAGAGAAGGAGGAAGGGAACATGGAGAGGGAGGCGGCG
GCTGTGTTCGCCTTTGCAGCCAAGATGCGCGCGTGGGAGCGCTGGGAAGG
GGTAATCCTCCTCGCATCGCCCTGGAAAAAGGGTCGGGAATTGGGGGGGG
AAGAAAGAAATAAGAGTGTGATGGGGGAAAAAGAAAGGAATAAGAGTGTG
ATGGAGGAGGAGGAGGAGGAGTGGGGCATGCGGACAAGAAGATAA
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Synonyms
Publications