jgi.p|Nanoce1779_2|247427, mRNA_8960 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|247427
Unique NamemRNA_8960
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1125
Alignment locationscaffold_30:15668..17078 -

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Properties
Property NameValue
TranscriptId247513
TrackFilteredModels2
ProteinId247427
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_30supercontigscaffold_30:15668..17078 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|247427gene_8960Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|247427mRNA_8960-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8960CDS_8960Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8960 ID=mRNA_8960|Name=jgi.p|Nanoce1779_2|247427|organism=Nannochloropsis oceanica|type=mRNA|length=1125bp
GTCAGAGCACGCAGAATTGGAAATGATGAAAAGGAGGAGGACCAGACCGA
TGAGAAATTTGTCTGGGTCTACTTGTTTGAAAGGTCTTAGGTGCTCGATC
TTGTCTTTATAAAAAGCAAGCAAGATAGTGCTACATCCTTGCTGGCAATT
CTCAAACCCACTTTCCACACAATTTATGAACTTGCAAAACAATCTCTCCC
CAAAATAGGCCACACCGCAAGATGACGGAAGACGACCGCTTACTCCACAA
ATGGCGAAACTACTACATTAACCCGTCCGCTCGTCCCCCTTGGGAAACCT
CCTCCCCTTCATCCTTCGTCCTTGCCCTTCTTCCCTCCTTGCCTAAAGGG
TCCAAGACTTTGGAGCTAGGCTGCGGCTTGGGGCTGACGTCGATTCATCT
CGCTCATGCCTGCGAATGCCGCGCAACGGCCGTTGACCTGGTCCCCGAAG
CGGTGGCTCAAGGACGAGCGAAGGAAAGAGAGCTTTATCCTCCAGAGAGG
GAGGAAGGGGTGGAGGGAGGAAGGATAGAGGGAAGCAGGGGTGATGATGA
TCGATCGGCTTTTACCTCAGAAGGAGGAAGGGTAGGAGGAGGGGTGGAGT
GGCTTGTAGGTGATCTCTTCACTCTCCTCGCCTCTCCACGCCACAAGGGA
CAGTACGATCTGATTATAGACATCCAATGCCTGCACACCTTCCCTTCCTC
TCTCCCTCCCTTCCCCTCTTCCTCGCCTTCTCCTTCACCTCCACGCACCC
GCTTGGCGCTTGCTCGACTCACTCACTCCCTTCTGAAGCCCGGCGGGCGG
GCACTTATCGTGGTTGGGAACGACAAAGAGAAATACGGAGGTCAGCAAGG
AAAGATGGGGCCATCGTTGCTATCGAAGGAGGAAGTGATGGAGTTTTGTC
GCGAGGGAGGGTTGGAGGAAGGGGGGGATGAAGGGGAGGGGCTGAGGGAA
GGTAGGTTTGAGCGGACGGAGGCATATGGGGAGCATCCGCCTTGGTGCTG
GGTGGGGGTGTTTAGGAGGAAGGAGGACAAGAAGTGATGATGGCACGTGG
AGAAAACGCGGAGGGGGAGGGAAGGCGAGAGGTGACAGGGGAGGTCAAAA
AAATAAGTATAAGTATACACAGCGT
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protein sequence of jgi.p|Nanoce1779_2|247427

>mRNA_8960-protein ID=mRNA_8960-protein|Name=jgi.p|Nanoce1779_2|247427|organism=Nannochloropsis oceanica|type=polypeptide|length=272bp
MTEDDRLLHKWRNYYINPSARPPWETSSPSSFVLALLPSLPKGSKTLELG
CGLGLTSIHLAHACECRATAVDLVPEAVAQGRAKERELYPPEREEGVEGG
RIEGSRGDDDRSAFTSEGGRVGGGVEWLVGDLFTLLASPRHKGQYDLIID
IQCLHTFPSSLPPFPSSSPSPSPPRTRLALARLTHSLLKPGGRALIVVGN
DKEKYGGQQGKMGPSLLSKEEVMEFCREGGLEEGGDEGEGLREGRFERTE
AYGEHPPWCWVGVFRRKEDKK*
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mRNA from alignment at scaffold_30:15668..17078-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8960 ID=mRNA_8960|Name=jgi.p|Nanoce1779_2|247427|organism=Nannochloropsis oceanica|type=mRNA|length=1411bp|location=Sequence derived from alignment at scaffold_30:15668..17078- (Nannochloropsis oceanica)
GTCAGAGCACGCAGAATTGGAAATGATGAAAAGGAGGAGGACCAGACCGA
TGAGAAATTTGTCTGGGTCTACTTGTTTGAAAGGTCTTAGGTGCTCGATC
TTGTCTTTATAAAAAGCAAGCAAGATAGTGCTACATCCTTGCTGGCAATT
CTCAAACCCACTTTCCACACAATTTATGAACTTGCAAAACAATCTCTCCC
CAAAATAGGCCACACCGCAAGATGACGGAAGACGACCGCTTACTCCACAA
ATGGCGAAACTACTACATTAACCCGTCCGCTCGTCCCCCTTGGGAAACCT
CCTCCCCTTCATCCTTCGTCCTTGCCCTTCTTCCCTCCTTGCCTAAAGGT
ACGTCGTCGATTCTAATACCGGCATCCTCTTCCCTTCCCTTCACGTTTCC
CTTGCTCTGCGTACACCCACAGGGTCCAAGACTTTGGAGCTAGGCTGCGG
CTTGGGGCTGACGTCGATTCATCTCGGTACGAGGCAGGGAAAAGGGGGGG
GAGATGAACGAAAGTAAAGGAAAAGGAGAAGGAAGTTCTCGAATACTTGT
TTCTATTTTTCTTCTTGTCCACTGCTATCTCTATTCTTCACTTTCCCCAT
ACTGCGAGAATTCTACTGATTTAATACCTGAAGAGTGTTCTTCCTTCCTC
AGTCACTCTTTCTCTCCCTTCCTCCCTCGTTCTCCCAGCTCATGCCTGCG
AATGCCGCGCAACGGCCGTTGACCTGGTCCCCGAAGCGGTGGCTCAAGGA
CGAGCGAAGGAAAGAGAGCTTTATCCTCCAGAGAGGGAGGAAGGGGTGGA
GGGAGGAAGGATAGAGGGAAGCAGGGGTGATGATGATCGATCGGCTTTTA
CCTCAGAAGGAGGAAGGGTAGGAGGAGGGGTGGAGTGGCTTGTAGGTGAT
CTCTTCACTCTCCTCGCCTCTCCACGCCACAAGGGACAGTACGATCTGAT
TATAGACATCCAATGCCTGCACACCTTCCCTTCCTCTCTCCCTCCCTTCC
CCTCTTCCTCGCCTTCTCCTTCACCTCCACGCACCCGCTTGGCGCTTGCT
CGACTCACTCACTCCCTTCTGAAGCCCGGCGGGCGGGCACTTATCGTGGT
TGGGAACGACAAAGAGAAATACGGAGGTCAGCAAGGAAAGATGGGGCCAT
CGTTGCTATCGAAGGAGGAAGTGATGGAGTTTTGTCGCGAGGGAGGGTTG
GAGGAAGGGGGGGATGAAGGGGAGGGGCTGAGGGAAGGTAGGTTTGAGCG
GACGGAGGCATATGGGGAGCATCCGCCTTGGTGCTGGGTGGGGGTGTTTA
GGAGGAAGGAGGACAAGAAGTGATGATGGCACGTGGAGAAAACGCGGAGG
GGGAGGGAAGGCGAGAGGTGACAGGGGAGGTCAAAAAAATAAGTATAAGT
ATACACAGCGT
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Coding sequence (CDS) from alignment at scaffold_30:15668..17078-

>mRNA_8960 ID=mRNA_8960|Name=jgi.p|Nanoce1779_2|247427|organism=Nannochloropsis oceanica|type=CDS|length=2448bp|location=Sequence derived from alignment at scaffold_30:15668..17078- (Nannochloropsis oceanica)
CTCATGCCTGCGAATGCCGCGCAACGGCCGTTGACCTGGTCCCCGAAGCG
GTGGCTCAAGGACGAGCGAAGGAAAGAGAGCTTTATCCTCCAGAGAGGGA
GGAAGGGGTGGAGGGAGGAAGGATAGAGGGAAGCAGGGGTGATGATGATC
GATCGGCTTTTACCTCAGAAGGAGGAAGGGTAGGAGGAGGGGTGGAGTGG
CTTGTAGGTGATCTCTTCACTCTCCTCGCCTCTCCACGCCACAAGGGACA
GTACGATCTGATTATAGACATCCAATGCCTGCACACCTTCCCTTCCTCTC
TCCCTCCCTTCCCCTCTTCCTCGCCTTCTCCTTCACCTCCACGCACCCGC
TTGGCGCTTGCTCGACTCACTCACTCCCTTCTGAAGCCCGGCGGGCGGGC
ACTTATCGTGGTTGGGAACGACAAAGAGAAATACGGAGGTCAGCAAGGAA
AGATGGGGCCATCGTTGCTATCGAAGGAGGAAGTGATGGAGTTTTGTCGC
GAGGGAGGGTTGGAGGAAGGGGGGGATGAAGGGGAGGGGCTGAGGGAAGG
TAGGTTTGAGCGGACGGAGGCATATGGGGAGCATCCGCCTTGGTGCTGGG
TGGGGGTGTTTAGGAGGAAGGAGGACAAGAAGTGAGGTCCAAGACTTTGG
AGCTAGGCTGCGGCTTGGGGCTGACGTCGATTCATCTCGATGACGGAAGA
CGACCGCTTACTCCACAAATGGCGAAACTACTACATTAACCCGTCCGCTC
GTCCCCCTTGGGAAACCTCCTCCCCTTCATCCTTCGTCCTTGCCCTTCTT
CCCTCCTTGCCTAAAGCTCATGCCTGCGAATGCCGCGCAACGGCCGTTGA
CCTGGTCCCCGAAGCGGTGGCTCAAGGACGAGCGAAGGAAAGAGAGCTTT
ATCCTCCAGAGAGGGAGGAAGGGGTGGAGGGAGGAAGGATAGAGGGAAGC
AGGGGTGATGATGATCGATCGGCTTTTACCTCAGAAGGAGGAAGGGTAGG
AGGAGGGGTGGAGTGGCTTGTAGGTGATCTCTTCACTCTCCTCGCCTCTC
CACGCCACAAGGGACAGTACGATCTGATTATAGACATCCAATGCCTGCAC
ACCTTCCCTTCCTCTCTCCCTCCCTTCCCCTCTTCCTCGCCTTCTCCTTC
ACCTCCACGCACCCGCTTGGCGCTTGCTCGACTCACTCACTCCCTTCTGA
AGCCCGGCGGGCGGGCACTTATCGTGGTTGGGAACGACAAAGAGAAATAC
GGAGGTCAGCAAGGAAAGATGGGGCCATCGTTGCTATCGAAGGAGGAAGT
GATGGAGTTTTGTCGCGAGGGAGGGTTGGAGGAAGGGGGGGATGAAGGGG
AGGGGCTGAGGGAAGGTAGGTTTGAGCGGACGGAGGCATATGGGGAGCAT
CCGCCTTGGTGCTGGGTGGGGGTGTTTAGGAGGAAGGAGGACAAGAAGTG
AGGTCCAAGACTTTGGAGCTAGGCTGCGGCTTGGGGCTGACGTCGATTCA
TCTCGATGACGGAAGACGACCGCTTACTCCACAAATGGCGAAACTACTAC
ATTAACCCGTCCGCTCGTCCCCCTTGGGAAACCTCCTCCCCTTCATCCTT
CGTCCTTGCCCTTCTTCCCTCCTTGCCTAAAGCTCATGCCTGCGAATGCC
GCGCAACGGCCGTTGACCTGGTCCCCGAAGCGGTGGCTCAAGGACGAGCG
AAGGAAAGAGAGCTTTATCCTCCAGAGAGGGAGGAAGGGGTGGAGGGAGG
AAGGATAGAGGGAAGCAGGGGTGATGATGATCGATCGGCTTTTACCTCAG
AAGGAGGAAGGGTAGGAGGAGGGGTGGAGTGGCTTGTAGGTGATCTCTTC
ACTCTCCTCGCCTCTCCACGCCACAAGGGACAGTACGATCTGATTATAGA
CATCCAATGCCTGCACACCTTCCCTTCCTCTCTCCCTCCCTTCCCCTCTT
CCTCGCCTTCTCCTTCACCTCCACGCACCCGCTTGGCGCTTGCTCGACTC
ACTCACTCCCTTCTGAAGCCCGGCGGGCGGGCACTTATCGTGGTTGGGAA
CGACAAAGAGAAATACGGAGGTCAGCAAGGAAAGATGGGGCCATCGTTGC
TATCGAAGGAGGAAGTGATGGAGTTTTGTCGCGAGGGAGGGTTGGAGGAA
GGGGGGGATGAAGGGGAGGGGCTGAGGGAAGGTAGGTTTGAGCGGACGGA
GGCATATGGGGAGCATCCGCCTTGGTGCTGGGTGGGGGTGTTTAGGAGGA
AGGAGGACAAGAAGTGAGGTCCAAGACTTTGGAGCTAGGCTGCGGCTTGG
GGCTGACGTCGATTCATCTCGATGACGGAAGACGACCGCTTACTCCACAA
ATGGCGAAACTACTACATTAACCCGTCCGCTCGTCCCCCTTGGGAAACCT
CCTCCCCTTCATCCTTCGTCCTTGCCCTTCTTCCCTCCTTGCCTAAAG
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Synonyms
Publications