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Properties
| Property Name | Value |
|---|
| TranscriptId | 574637 |
| Track | FilteredModels2 |
| ProteinId | 574551 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_2 | supercontig | scaffold_2:685254..686850 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_896 ID=mRNA_896|Name=jgi.p|Nanoce1779_2|574551|organism=Nannochloropsis oceanica|type=mRNA|length=1597bp
CAGATCCTGGTGGACGAAATGCAGCTGAACATCTGCTATAGCTGGCGCGG
TGGCGAAAGCTAGGGGGATTTTTCCAGCGTGGGATGCCTGGCACCCTCTG
CGTTTCGCTTGGGGCTGGACGATTCGCAGGGCGGCAGAGAGCTGCGCATT
TCCTACACAAATCAATTTAGCTTAATGATCCTTCAGTGCACACCCCGAGT
CAACACTACGATATCCATGAACAGGCGAACTGCCTTCCGGAAAAAAGAAG
GAGCTACTTCTGAGTATCAACGTTGAGACTCTCAACCCCGATCTTACGGG
GCGACTGACCCACCATCTCGGCTTGGAAAACAATGTCCTTCCCCGTGCCT
ACTGTGAACTAGTCCTGACAGCGCTCCTCCTCTGGATCACTTGGGTCAAT
AATTTGTACTGTACCAAAGAGCATGCAACGACCATCCATGAACTACATCT
CTCGCTTGGACGCTGATGGAGTCGTCCATCAATTTTTTAGGATGGGCACT
ACTCTGCTAGAGCATCTTAGCTTGCTCTCACAGCTCGTCATATTGGCGTT
GCTTGCCTACGGTTACAAGGCTTACCCAAGACACCGTTTCCATTCGTCAC
ACTCGCCTCTTATCGGGGGGCGTGGGTACCTATATTATTCTCACCCTCTG
CCATGCAGCCTGCTGCAACACCAGCCGGGACTAAGCAAAACAGCACCAAG
ACCTTGTCTTGTCCTCCTCTTCTTCATCCTACCCCTTTTCTTATCCCAAA
AGCAGAACAAATTTTGCCAAGCCTACAATCTGGGATTATACATACTTCAA
TGCCTTCTCTTTCTCCTCACCATTATCAGCGTCAACTGGTCCATTTCTTC
CCTCCGCTCCTCCCTAAACACCTCCCCCTGGAGAGTAACCAGCACCCCTC
TCACCTACTTCGCTCTTCAACATCTTCACTTCCTCCGAGCCCTCTTCCTC
ATTTACCTCTTCCTTCCCACTCTTCTAATGTTTTCGCGTCTCATGCTATT
TTCCTGCTCCTATGCTTGGATAGATTCCATTTTACAACAGTCCATCAACT
TAGCGATACTCGTAGCCCTCGCCATAAATTTTGCGCCAAATGACAAGACA
TTTTATTATAACCCCTTAGGCCTGGCGGCACAATCGCGCATGCCCTCACT
TTATCGTAGCGGCAGTTGTGAGAATGGTGTCAGGAGAAGAGGAGGAAGAG
GAAGAGGAGGAGGGGGAAGAGGAGCGATATTTCATCCTGCCGAACGGCTA
CGGCAGCTGCGGGTACGTAATAAAGGGATTCAACAGTGAATGCTGCTGCT
ACTGCAAACGTAGAAAGTAGTAATGGTTTTGTAAAGTAGCATGAAAATGT
TTCATGTTATATCAAAAAGTGATATCAACTTGTGCAGTTTATGAAAGAAT
AGACTGCGAATGATAATAGGGGAGATGGAAATTAAAGAGTAAACTCACTG
TGAGCGCTTTTCTTAGATCCCGATAATTCTGCACCATGATTTGTTTCATA
GTTGGGCTGTGGAGCGGTATAGCAAGTACTACACAATCGTAGTCGTCTTA
GCATCTCCAATTGTCCACGTCCCCATTCAACAGCAAATTTCGCCCCC back to topprotein sequence of jgi.p|Nanoce1779_2|574551 >mRNA_896-protein ID=mRNA_896-protein|Name=jgi.p|Nanoce1779_2|574551|organism=Nannochloropsis oceanica|type=polypeptide|length=289bp
MQRPSMNYISRLDADGVVHQFFRMGTTLLEHLSLLSQLVILALLAYGYKA
YPRHRFHSSHSPLIGGRGYLYYSHPLPCSLLQHQPGLSKTAPRPCLVLLF
FILPLFLSQKQNKFCQAYNLGLYILQCLLFLLTIISVNWSISSLRSSLNT
SPWRVTSTPLTYFALQHLHFLRALFLIYLFLPTLLMFSRLMLFSCSYAWI
DSILQQSINLAILVALAINFAPNDKTFYYNPLGLAAQSRMPSLYRSGSCE
NGVRRRGGRGRGGGGRGAIFHPAERLRQLRVRNKGIQQ* back to topmRNA from alignment at scaffold_2:685254..686850+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_896 ID=mRNA_896|Name=jgi.p|Nanoce1779_2|574551|organism=Nannochloropsis oceanica|type=mRNA|length=1597bp|location=Sequence derived from alignment at scaffold_2:685254..686850+ (Nannochloropsis oceanica)
CAGATCCTGGTGGACGAAATGCAGCTGAACATCTGCTATAGCTGGCGCGG
TGGCGAAAGCTAGGGGGATTTTTCCAGCGTGGGATGCCTGGCACCCTCTG
CGTTTCGCTTGGGGCTGGACGATTCGCAGGGCGGCAGAGAGCTGCGCATT
TCCTACACAAATCAATTTAGCTTAATGATCCTTCAGTGCACACCCCGAGT
CAACACTACGATATCCATGAACAGGCGAACTGCCTTCCGGAAAAAAGAAG
GAGCTACTTCTGAGTATCAACGTTGAGACTCTCAACCCCGATCTTACGGG
GCGACTGACCCACCATCTCGGCTTGGAAAACAATGTCCTTCCCCGTGCCT
ACTGTGAACTAGTCCTGACAGCGCTCCTCCTCTGGATCACTTGGGTCAAT
AATTTGTACTGTACCAAAGAGCATGCAACGACCATCCATGAACTACATCT
CTCGCTTGGACGCTGATGGAGTCGTCCATCAATTTTTTAGGATGGGCACT
ACTCTGCTAGAGCATCTTAGCTTGCTCTCACAGCTCGTCATATTGGCGTT
GCTTGCCTACGGTTACAAGGCTTACCCAAGACACCGTTTCCATTCGTCAC
ACTCGCCTCTTATCGGGGGGCGTGGGTACCTATATTATTCTCACCCTCTG
CCATGCAGCCTGCTGCAACACCAGCCGGGACTAAGCAAAACAGCACCAAG
ACCTTGTCTTGTCCTCCTCTTCTTCATCCTACCCCTTTTCTTATCCCAAA
AGCAGAACAAATTTTGCCAAGCCTACAATCTGGGATTATACATACTTCAA
TGCCTTCTCTTTCTCCTCACCATTATCAGCGTCAACTGGTCCATTTCTTC
CCTCCGCTCCTCCCTAAACACCTCCCCCTGGAGAGTAACCAGCACCCCTC
TCACCTACTTCGCTCTTCAACATCTTCACTTCCTCCGAGCCCTCTTCCTC
ATTTACCTCTTCCTTCCCACTCTTCTAATGTTTTCGCGTCTCATGCTATT
TTCCTGCTCCTATGCTTGGATAGATTCCATTTTACAACAGTCCATCAACT
TAGCGATACTCGTAGCCCTCGCCATAAATTTTGCGCCAAATGACAAGACA
TTTTATTATAACCCCTTAGGCCTGGCGGCACAATCGCGCATGCCCTCACT
TTATCGTAGCGGCAGTTGTGAGAATGGTGTCAGGAGAAGAGGAGGAAGAG
GAAGAGGAGGAGGGGGAAGAGGAGCGATATTTCATCCTGCCGAACGGCTA
CGGCAGCTGCGGGTACGTAATAAAGGGATTCAACAGTGAATGCTGCTGCT
ACTGCAAACGTAGAAAGTAGTAATGGTTTTGTAAAGTAGCATGAAAATGT
TTCATGTTATATCAAAAAGTGATATCAACTTGTGCAGTTTATGAAAGAAT
AGACTGCGAATGATAATAGGGGAGATGGAAATTAAAGAGTAAACTCACTG
TGAGCGCTTTTCTTAGATCCCGATAATTCTGCACCATGATTTGTTTCATA
GTTGGGCTGTGGAGCGGTATAGCAAGTACTACACAATCGTAGTCGTCTTA
GCATCTCCAATTGTCCACGTCCCCATTCAACAGCAAATTTCGCCCCC back to topCoding sequence (CDS) from alignment at scaffold_2:685254..686850+ >mRNA_896 ID=mRNA_896|Name=jgi.p|Nanoce1779_2|574551|organism=Nannochloropsis oceanica|type=CDS|length=867bp|location=Sequence derived from alignment at scaffold_2:685254..686850+ (Nannochloropsis oceanica)
ATGCAACGACCATCCATGAACTACATCTCTCGCTTGGACGCTGATGGAGT
CGTCCATCAATTTTTTAGGATGGGCACTACTCTGCTAGAGCATCTTAGCT
TGCTCTCACAGCTCGTCATATTGGCGTTGCTTGCCTACGGTTACAAGGCT
TACCCAAGACACCGTTTCCATTCGTCACACTCGCCTCTTATCGGGGGGCG
TGGGTACCTATATTATTCTCACCCTCTGCCATGCAGCCTGCTGCAACACC
AGCCGGGACTAAGCAAAACAGCACCAAGACCTTGTCTTGTCCTCCTCTTC
TTCATCCTACCCCTTTTCTTATCCCAAAAGCAGAACAAATTTTGCCAAGC
CTACAATCTGGGATTATACATACTTCAATGCCTTCTCTTTCTCCTCACCA
TTATCAGCGTCAACTGGTCCATTTCTTCCCTCCGCTCCTCCCTAAACACC
TCCCCCTGGAGAGTAACCAGCACCCCTCTCACCTACTTCGCTCTTCAACA
TCTTCACTTCCTCCGAGCCCTCTTCCTCATTTACCTCTTCCTTCCCACTC
TTCTAATGTTTTCGCGTCTCATGCTATTTTCCTGCTCCTATGCTTGGATA
GATTCCATTTTACAACAGTCCATCAACTTAGCGATACTCGTAGCCCTCGC
CATAAATTTTGCGCCAAATGACAAGACATTTTATTATAACCCCTTAGGCC
TGGCGGCACAATCGCGCATGCCCTCACTTTATCGTAGCGGCAGTTGTGAG
AATGGTGTCAGGAGAAGAGGAGGAAGAGGAAGAGGAGGAGGGGGAAGAGG
AGCGATATTTCATCCTGCCGAACGGCTACGGCAGCTGCGGGTACGTAATA
AAGGGATTCAACAGTGA back to top
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