jgi.p|Nanoce1779_2|604629, mRNA_8959 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604629
Unique Name	mRNA_8959
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	966
Alignment location	scaffold_30:14200..15649 +

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Properties


Property Name	Value
TranscriptId	604715
Track	FilteredModels2
ProteinId	604629

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_30	supercontig	scaffold_30:14200..15649 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604629	gene_8959	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604629	mRNA_8959-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8959	CDS_8959	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_30:14200..15649+
coding sequence from alignment at scaffold_30:14200..15649+

mRNA sequence

>mRNA_8959 ID=mRNA_8959|Name=jgi.p|Nanoce1779_2|604629|organism=Nannochloropsis oceanica|type=mRNA|length=966bp
ACAGACACGCAGGCATTGAGATCAGTATGCCGTCTTTCCCGGTGACTTCT
GAAAGGGCGGAGGAAGAAGAGAAGGACATGCTGGCAGAAGTCGCATGGGG
GGAAGACGACTGGGATGAGGAGAGCAGCTGGGAGGGTGAGGAGGAGGAGA
AGGACAACGACGATTCCTCTTCTCCACGACAAGGCCGAAGAGGACGAGGA
GGAGATGGAGGAGACGGAATGTGCCTCATGGGCCTGTACTTGGTCGGCTC
TCTGTTCGGAGGCCTGTGTGGCTTTATCACTAAGCGGATAGCCTTTCGAG
AAGTGGCAGGGGGGGCAGTGCCTTATTCCCGGACCATCTTTGCCTTGGAT
GTGTTGATGGGACTCGTCGCCGGCATGGCCGTCCTGGGCGCCTCTGCCTC
CTCCCCTCCTTCCCGCCCTCCCTCCTCCTTCCCTTCCTTTCGCACCCCCT
CGACCGCTCAAGGCGGGTACACTTATGTCCCGGTCACCACCAACGCCACC
TCTAGCAATCGGTCTTCCTCCTTCCCTTCGTCTCCCTCTTCCTCCAAAAT
TATCATCCATTTTTTAGTCCTCTTTTCGGCTGTCAATGCAAGTGTTGTGG
CAGGCTTCCTCCTCCTCGCCCTCCGCCGCGCCCTCGGACCCACCCTCCTC
CTTTACACCTTTTTGCTGAGTAGGGGCAAGAGCAAGAGCAGGACGGACGA
CGACGCACTTTCCCCCTCATGGTTGCTGCTACAAGCAGGCCTGGCAACAG
CAGCAGCAGTGAAGGGCAGAGAGTTCCTTCTTTGCTCCCCGCGTGGCAAG
GCCGTAGTGGCGTGGTTGGGTAGGGAGGGAACGCAGCGGAATGAGAGGAT
GATGGGAAGTCAAAAGGAGAGGAAGAGGGTGGCGATGACGCGAATGGAGG
TGCAGGTGTAGATAATGTTATCTAGTAGAAAAGATATCAAATAAAAAAGA
CGAAAGCGGTGTGACG

protein sequence of jgi.p|Nanoce1779_2|604629

>mRNA_8959-protein ID=mRNA_8959-protein|Name=jgi.p|Nanoce1779_2|604629|organism=Nannochloropsis oceanica|type=polypeptide|length=295bp
MPSFPVTSERAEEEEKDMLAEVAWGEDDWDEESSWEGEEEEKDNDDSSSP
RQGRRGRGGDGGDGMCLMGLYLVGSLFGGLCGFITKRIAFREVAGGAVPY
SRTIFALDVLMGLVAGMAVLGASASSPPSRPPSSFPSFRTPSTAQGGYTY
VPVTTNATSSNRSSSFPSSPSSSKIIIHFLVLFSAVNASVVAGFLLLALR
RALGPTLLLYTFLLSRGKSKSRTDDDALSPSWLLLQAGLATAAAVKGREF
LLCSPRGKAVVAWLGREGTQRNERMMGSQKERKRVAMTRMEVQV*

mRNA from alignment at scaffold_30:14200..15649+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8959 ID=mRNA_8959|Name=jgi.p|Nanoce1779_2|604629|organism=Nannochloropsis oceanica|type=mRNA|length=1450bp|location=Sequence derived from alignment at scaffold_30:14200..15649+ (Nannochloropsis oceanica)
ACAGACACGCAGGCATTGAGATCAGTATGCCGTCTTTCCCGGTGACTTCT
GAAAGGGCGGAGGAAGAAGAGAAGGACATGCTGGCAGAAGTCGCATGGGG
GGAAGACGACTGGGATGAGGAGAGCAGCTGGGAGGGTGAGGAGGAGGAGA
AGGACAACGACGGTAAGAGAGAAGGATGAGGATGAGGAGGAGAAGGAGGA
TGAGAAGGAGGGGGAGGAAGAGGAAAATCCAGAGGGAAAGGAGGAGGGTA
GGGTGGGGATGGGACATGGGATGAATTGGACCTGGACTATGCCCAGACTA
GACCAGTAAAATGTGCCATCCAACCAAGCAATCACTCGTTTTTTGCACAT
CACAACCCTCCGTTTCTGTCCACAGATTCCTCTTCTCCACGACAAGGCCG
AAGAGGACGAGGAGGAGATGGAGGAGACGGAATGTGCCTCATGGGCCTGT
ACTTGGTCGGCTCTCTGTTCGGAGGCCTGTGTGGCTTTATCACTAAGCGG
ATAGCCTTTCGAGAAGTGGCAGGGGGGGCAGTGCCTTATTCCCGGACCAT
CTTTGCCTTGGATGTGTTGATGGTATGGGGAGGGGGGGGGAAGGGAGGGA
AGTAGAGAGGGAGAGAGGGACTGTGGCCTGCATGCTCCCTTCACTTCACT
TCCATTCGTTTTCTTGAACCTCGACCAAATTCATTGTTTTTCTATCATTA
CCTTTCTCTCCTCCTGTTTCGTAGGGACTCGTCGCCGGCATGGCCGTCCT
GGGCGCCTCTGCCTCCTCCCCTCCTTCCCGCCCTCCCTCCTCCTTCCCTT
CCTTTCGCACCCCCTCGACCGCTCAAGGCGGGTACACTTATGTCCCGGTC
ACCACCAACGCCACCTCTAGCAATCGGTCTTCCTCCTTCCCTTCGTCTCC
CTCTTCCTCCAAAATTATCATCCATTTTTTAGTCCTCTTTTCGGCTGTCA
ATGCAAGTGTTGTGGCAGGCTTCCTCCTCCTCGCCCTCCGCCGCGCCCTC
GGACCCACCCTCCTCCTTTACACCTTTTTGCTGAGTAGGGGCAAGAGCAA
GAGCAGGACGGTAAGGAGCCAGGAGGGAGGGAGAGTGAGAGGAAGGCCAA
TTTTGTCCTTAAAATCGACCTAAACCACCCACCCTCCCTCCCTCCCTCCT
TCCCTCTTTCCCTTACATTCATCCTCTAGGACGACGACGCACTTTCCCCC
TCATGGTTGCTGCTACAAGCAGGCCTGGCAACAGCAGCAGCAGTGAAGGG
CAGAGAGTTCCTTCTTTGCTCCCCGCGTGGCAAGGCCGTAGTGGCGTGGT
TGGGTAGGGAGGGAACGCAGCGGAATGAGAGGATGATGGGAAGTCAAAAG
GAGAGGAAGAGGGTGGCGATGACGCGAATGGAGGTGCAGGTGTAGATAAT
GTTATCTAGTAGAAAAGATATCAAATAAAAAAGACGAAAGCGGTGTGACG

Coding sequence (CDS) from alignment at scaffold_30:14200..15649+

>mRNA_8959 ID=mRNA_8959|Name=jgi.p|Nanoce1779_2|604629|organism=Nannochloropsis oceanica|type=CDS|length=3540bp|location=Sequence derived from alignment at scaffold_30:14200..15649+ (Nannochloropsis oceanica)
ATGCCGTCTTTCCCGGTGACTTCTGAAAGGGCGGAGGAAGAAGAGAAGGA
CATGCTGGCAGAAGTCGCATGGGGGGAAGACGACTGGGATGAGGAGAGCA
GCTGGGAGGGTGAGGAGGAGGAGAAGGACAACGACGATTCCTCTTCTCCA
CGACAAGGCCGAAGAGGACGAGGAGGAGATGGAGGAGACGGAATGTGCCT
CATGGGCCTGTACTTGGTCGGCTCTCTGTTCGGAGGCCTGTGTGGCTTTA
TCACTAAGCGGATAGCCTTTCGAGAAGTGGCAGGGGGGGCAGTGCCTTAT
TCCCGGACCATCTTTGCCTTGGATGTGTTGATGGGACTCGTCGCCGGCAT
GGCCGTCCTGGGCGCCTCTGCCTCCTCCCCTCCTTCCCGCCCTCCCTCCT
CCTTCCCTTCCTTTCGCACCCCCTCGACCGCTCAAGGCGGGTACACTTAT
GTCCCGGTCACCACCAACGCCACCTCTAGCAATCGGTCTTCCTCCTTCCC
TTCGTCTCCCTCTTCCTCCAAAATTATCATCCATTTTTTAGTCCTCTTTT
CGGCTGTCAATGCAAGTGTTGTGGCAGGCTTCCTCCTCCTCGCCCTCCGC
CGCGCCCTCGGACCCACCCTCCTCCTTTACACCTTTTTGCTGAGTAGGGG
CAAGAGCAAGAGCAGGACGGACGACGACGCACTTTCCCCCTCATGGTTGC
TGCTACAAGCAGGCCTGGCAACAGCAGCAGCAGTGAAGGGCAGAGAGTTC
CTTCTTTGCTCCCCGCGTGGCAAGGCCGTAGTGGCGTGGTTGGGTAGGGA
GGGAACGCAGCGGAATGAGAGGATGATGGGAAGTCAAAAGGAGAGGAAGA
GGGTGGCGATGACGCGAATGGAGGTGCAGGTGTAGATGCCGTCTTTCCCG
GTGACTTCTGAAAGGGCGGAGGAAGAAGAGAAGGACATGCTGGCAGAAGT
CGCATGGGGGGAAGACGACTGGGATGAGGAGAGCAGCTGGGAGGGTGAGG
AGGAGGAGAAGGACAACGACGATTCCTCTTCTCCACGACAAGGCCGAAGA
GGACGAGGAGGAGATGGAGGAGACGGAATGTGCCTCATGGGCCTGTACTT
GGTCGGCTCTCTGTTCGGAGGCCTGTGTGGCTTTATCACTAAGCGGATAG
CCTTTCGAGAAGTGGCAGGGGGGGCAGTGCCTTATTCCCGGACCATCTTT
GCCTTGGATGTGTTGATGGGACTCGTCGCCGGCATGGCCGTCCTGGGCGC
CTCTGCCTCCTCCCCTCCTTCCCGCCCTCCCTCCTCCTTCCCTTCCTTTC
GCACCCCCTCGACCGCTCAAGGCGGGTACACTTATGTCCCGGTCACCACC
AACGCCACCTCTAGCAATCGGTCTTCCTCCTTCCCTTCGTCTCCCTCTTC
CTCCAAAATTATCATCCATTTTTTAGTCCTCTTTTCGGCTGTCAATGCAA
GTGTTGTGGCAGGCTTCCTCCTCCTCGCCCTCCGCCGCGCCCTCGGACCC
ACCCTCCTCCTTTACACCTTTTTGCTGAGTAGGGGCAAGAGCAAGAGCAG
GACGGACGACGACGCACTTTCCCCCTCATGGTTGCTGCTACAAGCAGGCC
TGGCAACAGCAGCAGCAGTGAAGGGCAGAGAGTTCCTTCTTTGCTCCCCG
CGTGGCAAGGCCGTAGTGGCGTGGTTGGGTAGGGAGGGAACGCAGCGGAA
TGAGAGGATGATGGGAAGTCAAAAGGAGAGGAAGAGGGTGGCGATGACGC
GAATGGAGGTGCAGGTGTAGATGCCGTCTTTCCCGGTGACTTCTGAAAGG
GCGGAGGAAGAAGAGAAGGACATGCTGGCAGAAGTCGCATGGGGGGAAGA
CGACTGGGATGAGGAGAGCAGCTGGGAGGGTGAGGAGGAGGAGAAGGACA
ACGACGATTCCTCTTCTCCACGACAAGGCCGAAGAGGACGAGGAGGAGAT
GGAGGAGACGGAATGTGCCTCATGGGCCTGTACTTGGTCGGCTCTCTGTT
CGGAGGCCTGTGTGGCTTTATCACTAAGCGGATAGCCTTTCGAGAAGTGG
CAGGGGGGGCAGTGCCTTATTCCCGGACCATCTTTGCCTTGGATGTGTTG
ATGGGACTCGTCGCCGGCATGGCCGTCCTGGGCGCCTCTGCCTCCTCCCC
TCCTTCCCGCCCTCCCTCCTCCTTCCCTTCCTTTCGCACCCCCTCGACCG
CTCAAGGCGGGTACACTTATGTCCCGGTCACCACCAACGCCACCTCTAGC
AATCGGTCTTCCTCCTTCCCTTCGTCTCCCTCTTCCTCCAAAATTATCAT
CCATTTTTTAGTCCTCTTTTCGGCTGTCAATGCAAGTGTTGTGGCAGGCT
TCCTCCTCCTCGCCCTCCGCCGCGCCCTCGGACCCACCCTCCTCCTTTAC
ACCTTTTTGCTGAGTAGGGGCAAGAGCAAGAGCAGGACGGACGACGACGC
ACTTTCCCCCTCATGGTTGCTGCTACAAGCAGGCCTGGCAACAGCAGCAG
CAGTGAAGGGCAGAGAGTTCCTTCTTTGCTCCCCGCGTGGCAAGGCCGTA
GTGGCGTGGTTGGGTAGGGAGGGAACGCAGCGGAATGAGAGGATGATGGG
AAGTCAAAAGGAGAGGAAGAGGGTGGCGATGACGCGAATGGAGGTGCAGG
TGTAGATGCCGTCTTTCCCGGTGACTTCTGAAAGGGCGGAGGAAGAAGAG
AAGGACATGCTGGCAGAAGTCGCATGGGGGGAAGACGACTGGGATGAGGA
GAGCAGCTGGGAGGGTGAGGAGGAGGAGAAGGACAACGACGATTCCTCTT
CTCCACGACAAGGCCGAAGAGGACGAGGAGGAGATGGAGGAGACGGAATG
TGCCTCATGGGCCTGTACTTGGTCGGCTCTCTGTTCGGAGGCCTGTGTGG
CTTTATCACTAAGCGGATAGCCTTTCGAGAAGTGGCAGGGGGGGCAGTGC
CTTATTCCCGGACCATCTTTGCCTTGGATGTGTTGATGGGACTCGTCGCC
GGCATGGCCGTCCTGGGCGCCTCTGCCTCCTCCCCTCCTTCCCGCCCTCC
CTCCTCCTTCCCTTCCTTTCGCACCCCCTCGACCGCTCAAGGCGGGTACA
CTTATGTCCCGGTCACCACCAACGCCACCTCTAGCAATCGGTCTTCCTCC
TTCCCTTCGTCTCCCTCTTCCTCCAAAATTATCATCCATTTTTTAGTCCT
CTTTTCGGCTGTCAATGCAAGTGTTGTGGCAGGCTTCCTCCTCCTCGCCC
TCCGCCGCGCCCTCGGACCCACCCTCCTCCTTTACACCTTTTTGCTGAGT
AGGGGCAAGAGCAAGAGCAGGACGGACGACGACGCACTTTCCCCCTCATG
GTTGCTGCTACAAGCAGGCCTGGCAACAGCAGCAGCAGTGAAGGGCAGAG
AGTTCCTTCTTTGCTCCCCGCGTGGCAAGGCCGTAGTGGCGTGGTTGGGT
AGGGAGGGAACGCAGCGGAATGAGAGGATGATGGGAAGTCAAAAGGAGAG
GAAGAGGGTGGCGATGACGCGAATGGAGGTGCAGGTGTAG

Synonyms

Publications