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Properties
| Property Name | Value |
|---|
| TranscriptId | 247243 |
| Track | FilteredModels2 |
| ProteinId | 247157 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_30 | supercontig | scaffold_30:1..1924 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8955 ID=mRNA_8955|Name=jgi.p|Nanoce1779_2|247157|organism=Nannochloropsis oceanica|type=mRNA|length=1654bp
CAACCTTCACAGCCAACTACAGATATTCCCAACACAAGCCCACAGGCAAC
GTACAGCAACGAGGGCGTCTTTTACTTGTCAGTGCGTTTGCGGGCGGGTG
CAAGACTGACTGTACTGGTCGTTCACAGTCAAGCCAAACACTAACTAAAG
GCGCCTCGTCGCCGCGGGCTTTCTTTGCTTCTTTCTGTGTGTCCTGGAGG
CACTCGCTAATTGAGCTACAGGTCACTCACAATTCTACTACATCCTCCAC
TGCACACTACATTGAAGTGCATCCATGCGTTAGCCGCACAGAGGAAGGAA
AAGTCCGTGCGGCGCCTGTCCGTCCGAAATTGGTCGCTCTCTCCATCCAA
GCAGCAACAGGAACAGAAGCCGCCTCACTCGAGAAGGAGGAATAATGGAA
GCGCCTAGCAGCCCCATAGACAAGGAGCCTGAGATGAAGAAAGATGCTGC
CGCTGCAATTGCTCCTGCCCCTCCTTGTCCCCCTTCTTCTTCCGTAAATT
ATTGGGAAGCTTCCCCTGAGAAAGAGAAAGAAATTAAGCCGGCTGCGGCA
GACGCCATAGAAGGGGAGGAGAAAGACACCAGTACTGCCGCTATTTATTC
TCCTGTCGCTCCTGCTGCTCCTGTTGCTCCCCGATGCTCTCCTTCCCCTG
CCAAGAAACAGCGGGAAGCTTACCCTGCGGAAAAGGCGGCAGCTAACACC
ATAGACAAGAAGGAGGATGAGGCGAGGGAAGAGCAGCAGCAGCAGCAGCA
GCAGCAGCCCCAAAGACCCACGCCCATGCCCACCACGGCCAGCGCCACCC
TCCCTCCCTCCCCCCCTGCCCCTGGGCACTACTGGTCCGTCCCCTCCGCC
GGCGCTAAGCGGGAACGGAAGGCAGTCGAAACCCTCGTCGTTCGTGATCC
CCGTGACACGCAGCCTGTTACCATCAAGCAGGGGAAAGGTTCGAAGAAGC
TGGGGGAGATGGAGACCTTTAGTCGAGAGATAGGAAAGATCAGAAACAAG
GACCCGTTTCTGAAGGTGCTGCACGGGCTGTGCTTTGGCCGAGGGCAGGC
CAAGGCTACCGAGGTGAAGGGACGCCTGAGGGAGTTCTCGGGTTTGGTCT
ACGAAGACGGGGAGGAGGAAAGGAGGGAGGGAGACTTGGCCCGGGAAAAG
GTGGAGGAGAAGGCGAGGAGAATGACAGTCGCAGAGTTGAAGAGGGCCTG
GGGAGTGCTGGGGGTGAGGACGAGAGAGGGAGGGAGGGCGGGGGGAAAAA
AGGAGGAGCTTGTGGAGGAGCTGGTAAACTGGCTGGAGTTGCCTAGGGAG
GAGGACGGAAGAAGGGAGGGAGGGAAGAAGGGGAGGAAGGTGGCGGTGAC
GAAGAGGAGAAAGAGAAAGAGCAGTGGGGCGAAAGGAGAAGAGCACCAGA
TGCGGCAGAAAAAGATGAAGACGGTTGCGGTGGCTTTGAAGACGAAGGGA
AAGAAGAAGGAGACGAAGAAGAGGAGGAATTGCAAGCTGTTCAGTGCGTC
GGCCAATATGAAGAGGAGAAAGAAGAGGAAAAGGAGGAGGAAGAATGTGA
CGATGAGATGAATGGATCGTGAAAAGGATAAAGAAGAGGAGAATAGGGGC
GTCCCTACTGCTGTGCTGGAGGAAGGGGTGATGAATATCCTTGCCGCTGC
TGAC back to topprotein sequence of jgi.p|Nanoce1779_2|247157 >mRNA_8955-protein ID=mRNA_8955-protein|Name=jgi.p|Nanoce1779_2|247157|organism=Nannochloropsis oceanica|type=polypeptide|length=389bp
MEAPSSPIDKEPEMKKDAAAAIAPAPPCPPSSSVNYWEASPEKEKEIKPA
AADAIEGEEKDTSTAAIYSPVAPAAPVAPRCSPSPAKKQREAYPAEKAAA
NTIDKKEDEAREEQQQQQQQQPQRPTPMPTTASATLPPSPPAPGHYWSVP
SAGAKRERKAVETLVVRDPRDTQPVTIKQGKGSKKLGEMETFSREIGKIR
NKDPFLKVLHGLCFGRGQAKATEVKGRLREFSGLVYEDGEEERREGDLAR
EKVEEKARRMTVAELKRAWGVLGVRTREGGRAGGKKEELVEELVNWLELP
REEDGRREGGKKGRKVAVTKRRKRKSSGAKGEEHQMRQKKMKTVAVALKT
KGKKKETKKRRNCKLFSASANMKRRKKRKRRRKNVTMR* back to topmRNA from alignment at scaffold_30:1..1924- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8955 ID=mRNA_8955|Name=jgi.p|Nanoce1779_2|247157|organism=Nannochloropsis oceanica|type=mRNA|length=1924bp|location=Sequence derived from alignment at scaffold_30:1..1924- (Nannochloropsis oceanica)
CAACCTTCACAGCCAACTACAGATATTCCCAACACAAGCCCACAGGCAAC
GTACAGCAACGAGGGCGTCTTTTACTTGTCAGTGCGTTTGCGGGCGGGTG
CAAGACTGACTGTACTGGTCGTTCACAGTCAAGCCAAACACTAACTAAAG
GCGCCTCGTCGCCGCGGGCTTTCTTTGCTTCTTTCTGTGTGTCCTGGAGG
CACTCGCTAATTGAGCTACAGGTCACTCACAATTCTACTACATCCTCCAC
TGCACACTACATTGAAGTGCATCCATGCGTTAGCCGCACAGAGGAAGGAA
AAGTCCGTGCGGCGCCTGTCCGTCCGAAATTGGTCGCTCTCTCCATCCAA
GCAGCAACAGGAACAGAAGCCGCCTCACTCGAGAAGGAGGAATAATGGAA
GCGCCTAGCAGCCCCATAGACAAGGAGCCTGAGATGAAGAAAGATGCTGC
CGCTGCAATTGCTCCTGCCCCTCCTTGTCCCCCTTCTTCTTCCGTAAATT
ATTGGGAAGCTTCCCCTGAGAAAGAGAAAGAAATTAAGCCGGCTGCGGCA
GACGCCATAGAAGGGGAGGAGAAAGACACCAGTACTGCCGCTATTTATTC
TCCTGTCGCTCCTGCTGCTCCTGTTGCTCCCCGATGCTCTCCTTCCCCTG
CCAAGAAACAGCGGGAAGCTTACCCTGCGGAAAAGGCGGCAGCTAACACC
ATAGACAAGAAGGAGGATGAGGCGAGGGAAGAGCAGCAGCAGCAGCAGCA
GCAGCAGCCCCAAAGACCCACGCCCATGCCCACCACGGCCAGCGCCACCC
TCCCTCCCTCCCCCCCTGCCCCTGGGCACTACTGGTCCGTCCCCTCCGCC
GGCGCTAAGCGGGAACGGAAGGCAGTCGAAACCCTCGTCGTTCGTGATCC
CCGTGACACGCAGCCTGTTACCATCAAGCAGGGGAAAGGTTCGAAGAAGC
TGGGGGAGATGGAGACCTTTAGTCGAGAGATAGGAAAGATCAGAAACAAG
GACCCGTTTCTGAAGGTGCTGCACGGGCTGTGCTTTGGCCGAGGGCAGGC
CAAGGCTACCGAGGTGAAGGGACGCCTGAGGGAGTTCTCGGGTTTGGTCT
ACGAAGACGGGGAGGAGGAAAGGAGGGAGGGAGACTTGGCCCGGGAAAAG
GTGGAGGAGAAGGCGAGGAGAATGACAGTCGCAGAGTTGAAGAGGGCCTG
GGGAGTGCTGGGGGTGAGGACGAGAGAGGGAGGGAGGGCGGGGGGAAAAA
AGGAGGAGCTTGTGGAGGAGCTGGTAAACTGGCTGGAGTTGCCTAGGGAG
GAGGACGGAAGAAGGGAGGGAGGGAAGAAGGGGAGGAAGGTGGCGGTGAC
GAAGAGGAGAAAGAGAAAGAGCAGTGGGGCGAAAGGAGAAGAGCACGTGG
AGGAGGAGGAGGGAAAAGAGGAGGAGGAGCAGCAGATGCGGCAGAAAAAG
ATGAAGACGGTTGCGGTGGCTTTGAAGACGAAGGGAAAGAAGAAGGAGAC
GAAGAAGAGGAGGAATTGCAAGCTGTTCAGTGCGTCGGCCAATATGCTGA
GGAGAAAGGGGAAGGGAGGGAAGGAGGGGGGAAGGAAGGGGTGGGGGGAG
AAAATAGAGAATAAGGAAGAGGAGAAAGAAGAGGAAAAGGAGGAGGAAGA
ATGTGACGATGAGATGAATGGATCGAAGAGAAGGAAGAAAAAGGTGGTGG
GGGCATCGGAAAAGGAGAAGGAAAAAGAGGAGGGAGAGGAGGAGGAGGAG
GAGGAGGAGGAAGAGGAAGGAGGAATGAATATAAGGAAAGGCGAGAAAGA
AGTAGAGAAGGAAGTAGAGGAGGGGGAGGTGAGGGAAGGTGAAAAGGATA
AAGAAGAGGAGAATAGGGGCGTCCCTACTGCTGTGCTGGAGGAAGGGGTG
ATGAATATCCTTGCCGCTGCTGAC back to topCoding sequence (CDS) from alignment at scaffold_30:1..1924- >mRNA_8955 ID=mRNA_8955|Name=jgi.p|Nanoce1779_2|247157|organism=Nannochloropsis oceanica|type=CDS|length=3501bp|location=Sequence derived from alignment at scaffold_30:1..1924- (Nannochloropsis oceanica)
GAAGAGGAGAAAGAAGAGGAAAAGGAGGAGGAAGAATGTGACGATGAGAT
GACAGATGCGGCAGAAAAAGATGAAGACGGTTGCGGTGGCTTTGAAGACG
AAGGGAAAGAAGAAGGAGACGAAGAAGAGGAGGAATTGCAAGCTGTTCAG
TGCGTCGGCCAATATATGGAAGCGCCTAGCAGCCCCATAGACAAGGAGCC
TGAGATGAAGAAAGATGCTGCCGCTGCAATTGCTCCTGCCCCTCCTTGTC
CCCCTTCTTCTTCCGTAAATTATTGGGAAGCTTCCCCTGAGAAAGAGAAA
GAAATTAAGCCGGCTGCGGCAGACGCCATAGAAGGGGAGGAGAAAGACAC
CAGTACTGCCGCTATTTATTCTCCTGTCGCTCCTGCTGCTCCTGTTGCTC
CCCGATGCTCTCCTTCCCCTGCCAAGAAACAGCGGGAAGCTTACCCTGCG
GAAAAGGCGGCAGCTAACACCATAGACAAGAAGGAGGATGAGGCGAGGGA
AGAGCAGCAGCAGCAGCAGCAGCAGCAGCCCCAAAGACCCACGCCCATGC
CCACCACGGCCAGCGCCACCCTCCCTCCCTCCCCCCCTGCCCCTGGGCAC
TACTGGTCCGTCCCCTCCGCCGGCGCTAAGCGGGAACGGAAGGCAGTCGA
AACCCTCGTCGTTCGTGATCCCCGTGACACGCAGCCTGTTACCATCAAGC
AGGGGAAAGGTTCGAAGAAGCTGGGGGAGATGGAGACCTTTAGTCGAGAG
ATAGGAAAGATCAGAAACAAGGACCCGTTTCTGAAGGTGCTGCACGGGCT
GTGCTTTGGCCGAGGGCAGGCCAAGGCTACCGAGGTGAAGGGACGCCTGA
GGGAGTTCTCGGGTTTGGTCTACGAAGACGGGGAGGAGGAAAGGAGGGAG
GGAGACTTGGCCCGGGAAAAGGTGGAGGAGAAGGCGAGGAGAATGACAGT
CGCAGAGTTGAAGAGGGCCTGGGGAGTGCTGGGGGTGAGGACGAGAGAGG
GAGGGAGGGCGGGGGGAAAAAAGGAGGAGCTTGTGGAGGAGCTGGTAAAC
TGGCTGGAGTTGCCTAGGGAGGAGGACGGAAGAAGGGAGGGAGGGAAGAA
GGGGAGGAAGGTGGCGGTGACGAAGAGGAGAAAGAGAAAGAGCAGTGGGG
CGAAAGGAGAAGAGCACGAAGAGGAGAAAGAAGAGGAAAAGGAGGAGGAA
GAATGTGACGATGAGATGACAGATGCGGCAGAAAAAGATGAAGACGGTTG
CGGTGGCTTTGAAGACGAAGGGAAAGAAGAAGGAGACGAAGAAGAGGAGG
AATTGCAAGCTGTTCAGTGCGTCGGCCAATATATGGAAGCGCCTAGCAGC
CCCATAGACAAGGAGCCTGAGATGAAGAAAGATGCTGCCGCTGCAATTGC
TCCTGCCCCTCCTTGTCCCCCTTCTTCTTCCGTAAATTATTGGGAAGCTT
CCCCTGAGAAAGAGAAAGAAATTAAGCCGGCTGCGGCAGACGCCATAGAA
GGGGAGGAGAAAGACACCAGTACTGCCGCTATTTATTCTCCTGTCGCTCC
TGCTGCTCCTGTTGCTCCCCGATGCTCTCCTTCCCCTGCCAAGAAACAGC
GGGAAGCTTACCCTGCGGAAAAGGCGGCAGCTAACACCATAGACAAGAAG
GAGGATGAGGCGAGGGAAGAGCAGCAGCAGCAGCAGCAGCAGCAGCCCCA
AAGACCCACGCCCATGCCCACCACGGCCAGCGCCACCCTCCCTCCCTCCC
CCCCTGCCCCTGGGCACTACTGGTCCGTCCCCTCCGCCGGCGCTAAGCGG
GAACGGAAGGCAGTCGAAACCCTCGTCGTTCGTGATCCCCGTGACACGCA
GCCTGTTACCATCAAGCAGGGGAAAGGTTCGAAGAAGCTGGGGGAGATGG
AGACCTTTAGTCGAGAGATAGGAAAGATCAGAAACAAGGACCCGTTTCTG
AAGGTGCTGCACGGGCTGTGCTTTGGCCGAGGGCAGGCCAAGGCTACCGA
GGTGAAGGGACGCCTGAGGGAGTTCTCGGGTTTGGTCTACGAAGACGGGG
AGGAGGAAAGGAGGGAGGGAGACTTGGCCCGGGAAAAGGTGGAGGAGAAG
GCGAGGAGAATGACAGTCGCAGAGTTGAAGAGGGCCTGGGGAGTGCTGGG
GGTGAGGACGAGAGAGGGAGGGAGGGCGGGGGGAAAAAAGGAGGAGCTTG
TGGAGGAGCTGGTAAACTGGCTGGAGTTGCCTAGGGAGGAGGACGGAAGA
AGGGAGGGAGGGAAGAAGGGGAGGAAGGTGGCGGTGACGAAGAGGAGAAA
GAGAAAGAGCAGTGGGGCGAAAGGAGAAGAGCACGAAGAGGAGAAAGAAG
AGGAAAAGGAGGAGGAAGAATGTGACGATGAGATGACAGATGCGGCAGAA
AAAGATGAAGACGGTTGCGGTGGCTTTGAAGACGAAGGGAAAGAAGAAGG
AGACGAAGAAGAGGAGGAATTGCAAGCTGTTCAGTGCGTCGGCCAATATA
TGGAAGCGCCTAGCAGCCCCATAGACAAGGAGCCTGAGATGAAGAAAGAT
GCTGCCGCTGCAATTGCTCCTGCCCCTCCTTGTCCCCCTTCTTCTTCCGT
AAATTATTGGGAAGCTTCCCCTGAGAAAGAGAAAGAAATTAAGCCGGCTG
CGGCAGACGCCATAGAAGGGGAGGAGAAAGACACCAGTACTGCCGCTATT
TATTCTCCTGTCGCTCCTGCTGCTCCTGTTGCTCCCCGATGCTCTCCTTC
CCCTGCCAAGAAACAGCGGGAAGCTTACCCTGCGGAAAAGGCGGCAGCTA
ACACCATAGACAAGAAGGAGGATGAGGCGAGGGAAGAGCAGCAGCAGCAG
CAGCAGCAGCAGCCCCAAAGACCCACGCCCATGCCCACCACGGCCAGCGC
CACCCTCCCTCCCTCCCCCCCTGCCCCTGGGCACTACTGGTCCGTCCCCT
CCGCCGGCGCTAAGCGGGAACGGAAGGCAGTCGAAACCCTCGTCGTTCGT
GATCCCCGTGACACGCAGCCTGTTACCATCAAGCAGGGGAAAGGTTCGAA
GAAGCTGGGGGAGATGGAGACCTTTAGTCGAGAGATAGGAAAGATCAGAA
ACAAGGACCCGTTTCTGAAGGTGCTGCACGGGCTGTGCTTTGGCCGAGGG
CAGGCCAAGGCTACCGAGGTGAAGGGACGCCTGAGGGAGTTCTCGGGTTT
GGTCTACGAAGACGGGGAGGAGGAAAGGAGGGAGGGAGACTTGGCCCGGG
AAAAGGTGGAGGAGAAGGCGAGGAGAATGACAGTCGCAGAGTTGAAGAGG
GCCTGGGGAGTGCTGGGGGTGAGGACGAGAGAGGGAGGGAGGGCGGGGGG
AAAAAAGGAGGAGCTTGTGGAGGAGCTGGTAAACTGGCTGGAGTTGCCTA
GGGAGGAGGACGGAAGAAGGGAGGGAGGGAAGAAGGGGAGGAAGGTGGCG
GTGACGAAGAGGAGAAAGAGAAAGAGCAGTGGGGCGAAAGGAGAAGAGCA
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