jgi.p|Nanoce1779_2|673781, mRNA_8954 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|673781
Unique Name	mRNA_8954
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	797
Alignment location	scaffold_29:306625..308209 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	673867
Track	FilteredModels2
ProteinId	673781

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:306625..308209 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673781	gene_8954	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|673781	mRNA_8954-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8954	CDS_8954	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:306625..308209+
coding sequence from alignment at scaffold_29:306625..308209+

mRNA sequence

>mRNA_8954 ID=mRNA_8954|Name=jgi.p|Nanoce1779_2|673781|organism=Nannochloropsis oceanica|type=mRNA|length=797bp
ATAGGACGGGAGGTCAACCCACCACCTCAAATATGGGAAGCAGCAGCAAG
AAGGAGGATAAGCACGAGAAGAGGGATGCAGAGGGGGGAAAGGAAAAGCA
GAAAAAGCAGAAGAAGAAGTCGAAATCGTCCAGCAGCAGTAAAAGGAAGG
AAAAACGCAGGCGGGATGAGGAGGAGGAGGCGGAAGGGGAGGAAGAGAAA
GCAGCGGGCCTCGAGCACCACTCCAAGAGGCACAAACACAAACACAAGAA
GGATAAGAAGAAGGATAAGAAGAAGGATGAGAGGAAAGACAAGAAGAGGG
TAAAACATGGCCTCGAGCCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
TCCCTTTCCTCTACCCTCCGAACCCTTCTCTTGTATCACCCCGCCATGGT
GAAGGAGGTGCTGCTGGTACTAGCGGCCTTGGAAGACGGTCAAGGCGTGG
CCTTGGATGGGCTTCCTTCCGTGGAGACGCGTCGACGAATGGGGGCCTTG
CTCGAGTCATTAGGCTTGCGTTCCGAGCTGCAGGGTCTCTCCGCCTCGAC
CACCTACTTCCTGTCCGAGGCGCAGGAAAAAGAAAATGACCCCCTTCTAT
CGGCGACACTGCAAGCTATCGACGGTATTCTAGGACCTCTTCCGCCAGCC
ACTCTGGCAGCCCATAGCGCCCTTGCCTCCCTCTTTGCCGCCTATCCCGT
CCTTGAAGCGGCGGGAGAGATCGAAGGACTCCTTCTGAGGCTGCTGGTTG
GGGAGAGCGTCGTGCTGGCCGGCCTGGAGGAAGAGAAGCTGAGGTAG

protein sequence of jgi.p|Nanoce1779_2|673781

>mRNA_8954-protein ID=mRNA_8954-protein|Name=jgi.p|Nanoce1779_2|673781|organism=Nannochloropsis oceanica|type=polypeptide|length=255bp
MGSSSKKEDKHEKRDAEGGKEKQKKQKKKSKSSSSSKRKEKRRRDEEEEA
EGEEEKAAGLEHHSKRHKHKHKKDKKKDKKKDERKDKKRVKHGLEPSSLP
PSLPPSSLSSTLRTLLLYHPAMVKEVLLVLAALEDGQGVALDGLPSVETR
RRMGALLESLGLRSELQGLSASTTYFLSEAQEKENDPLLSATLQAIDGIL
GPLPPATLAAHSALASLFAAYPVLEAAGEIEGLLLRLLVGESVVLAGLEE
EKLR*

mRNA from alignment at scaffold_29:306625..308209+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8954 ID=mRNA_8954|Name=jgi.p|Nanoce1779_2|673781|organism=Nannochloropsis oceanica|type=mRNA|length=1585bp|location=Sequence derived from alignment at scaffold_29:306625..308209+ (Nannochloropsis oceanica)
ATAGGACGGGAGGTCAACCCACCACCTCAAATATGGGAAGCAGCAGCAAG
AAGGAGGATAAGCACGAGAAGAGGGATGCAGAGGGGGGAAAGGAAAAGCA
GAAAAAGCAGAAGAAGAAGTCGAAATCGTCCAGCAGCAGTAAAAGGAAGG
AAAAACGCAGGCGGGATGAGGAGGAGGAGGCGGAAGGGGAGGAAGAGAAA
GCAGCGGGCCTCGAGGTATGGAATAGAGGCAGAAGAGTTGAAAGAGGCAG
TGAAAGGTTACGTAAAGGAATCGATGGTCTCAAATGTTGCTGCAGAAATG
GCAGAGGCATGACATGGTTGTAATGTGAGAGGCAAGGTGTCATGAGAGAA
ATGGAAAATATGGTATCCTCCCTCCTCTCAATTCATACTTCCCATCCACC
CCAACCACACAGCACCACTCCAAGAGGCACAAACACAAACACAAGAAGGA
TAAGAAGAAGGATAAGAAGAAGGATGAGAGGAAAGACAAGAAGAGGGTAA
AACATGGCCTCGAGCCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCC
CTTTCCTCTACCCTCCGAACCCTTCTCTTGTATCACCCCGCCATGGTGAA
GGAGGTGCTGCTGGTACTAGCGGCCTTGGAAGACGGTAAGGAGGGAGGGA
GGGAGGGACGGAGGGAGGAGCATAGGAGTATGCGTTCGACAATTTGATTT
GTCTCTTCATTCTTCTACGAAGAGGGAGGGAGGAGGGAGAATTCGATTTC
TCTCTTTGCGCCTTCTCATTCCTTCAAGCCTTGGCTCCTACTGACAGGTC
AAGGCGTGGCCTTGGATGGGCTTCCTTCCGTGGAGACGCGTCGACGAATG
GGGGCCTTGCTCGAGGTCGGGAAAATAGGGAGGGAGGGAGGGAGGGAGGG
GAGGGAGGGAGGGAGGGGGGGGAGGGAGAGAGGGAAGGAGGTAGGGAGAG
AGTGAAAGGTAAGAATGCTCATTTCTCTCGTCTTCTTGACATGACAGTCA
TTAGGCTTGCGTTCCGAGCTGCAGGGTCTCTCCGCCTCGACCACCTACTT
CCTGTCCGAGGCGCAGGTACACTATGCCCGCCCTCCCTCCCTCCCTCCCT
CCTTCCCCCTCTCATTTTGAACCCTTCCTCCTTGCTCCCCTTTTTTTCAT
TTTCTTCCACAGGAAAAAGAAAATGACCCCCTTCTATCGGCGACACTGCA
AGCTATCGACGGTATTCTAGGACCTCTTCCGCCAGGTCCGTCTTCCCTCC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCTCCAT
TCCTTCCTTCCTTCCTGCCTACCTCCTTCCCTCCCTCCCTACCTACTTAT
CTACCTACCTCCCTCCCTACCTCCCACTTCCTCTCAACCTCCTCCTTGTG
CCTTCCCTCCTTCCCTCCCTCTTTCCCTCGTGCCAGCCACTCTGGCAGCC
CATAGCGCCCTTGCCTCCCTCTTTGCCGCCTATCCCGTCCTTGAAGCGGC
GGGAGAGATCGAAGGACTCCTTCTGAGGCTGCTGGTTGGGGAGAGCGTCG
TGCTGGCCGGCCTGGAGGAAGAGAAGCTGAGGTAG

Coding sequence (CDS) from alignment at scaffold_29:306625..308209+

>mRNA_8954 ID=mRNA_8954|Name=jgi.p|Nanoce1779_2|673781|organism=Nannochloropsis oceanica|type=CDS|length=4590bp|location=Sequence derived from alignment at scaffold_29:306625..308209+ (Nannochloropsis oceanica)
ATGGGAAGCAGCAGCAAGAAGGAGGATAAGCACGAGAAGAGGGATGCAGA
GGGGGGAAAGGAAAAGCAGAAAAAGCAGAAGAAGAAGTCGAAATCGTCCA
GCAGCAGTAAAAGGAAGGAAAAACGCAGGCGGGATGAGGAGGAGGAGGCG
GAAGGGGAGGAAGAGAAAGCAGCGGGCCTCGAGCACCACTCCAAGAGGCA
CAAACACAAACACAAGAAGGATAAGAAGAAGGATAAGAAGAAGGATGAGA
GGAAAGACAAGAAGAGGGTAAAACATGGCCTCGAGCCATCCTCCCTCCCT
CCCTCCCTCCCTCCCTCCTCCCTTTCCTCTACCCTCCGAACCCTTCTCTT
GTATCACCCCGCCATGGTGAAGGAGGTGCTGCTGGTACTAGCGGCCTTGG
AAGACGGTCAAGGCGTGGCCTTGGATGGGCTTCCTTCCGTGGAGACGCGT
CGACGAATGGGGGCCTTGCTCGAGTCATTAGGCTTGCGTTCCGAGCTGCA
GGGTCTCTCCGCCTCGACCACCTACTTCCTGTCCGAGGCGCAGGAAAAAG
AAAATGACCCCCTTCTATCGGCGACACTGCAAGCTATCGACGGTATTCTA
GGACCTCTTCCGCCAGCCACTCTGGCAGCCCATAGCGCCCTTGCCTCCCT
CTTTGCCGCCTATCCCGTCCTTGAAGCGGCGGGAGAGATCGAAGGACTCC
TTCTGAGGCTGCTGGTTGGGGAGAGCGTCGTGCTGGCCGGCCTGGAGGAA
GAGAAGCTGAGGTAGATGGGAAGCAGCAGCAAGAAGGAGGATAAGCACGA
GAAGAGGGATGCAGAGGGGGGAAAGGAAAAGCAGAAAAAGCAGAAGAAGA
AGTCGAAATCGTCCAGCAGCAGTAAAAGGAAGGAAAAACGCAGGCGGGAT
GAGGAGGAGGAGGCGGAAGGGGAGGAAGAGAAAGCAGCGGGCCTCGAGCA
CCACTCCAAGAGGCACAAACACAAACACAAGAAGGATAAGAAGAAGGATA
AGAAGAAGGATGAGAGGAAAGACAAGAAGAGGGTAAAACATGGCCTCGAG
CCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCTTTCCTCTACCCT
CCGAACCCTTCTCTTGTATCACCCCGCCATGGTGAAGGAGGTGCTGCTGG
TACTAGCGGCCTTGGAAGACGGTCAAGGCGTGGCCTTGGATGGGCTTCCT
TCCGTGGAGACGCGTCGACGAATGGGGGCCTTGCTCGAGTCATTAGGCTT
GCGTTCCGAGCTGCAGGGTCTCTCCGCCTCGACCACCTACTTCCTGTCCG
AGGCGCAGGAAAAAGAAAATGACCCCCTTCTATCGGCGACACTGCAAGCT
ATCGACGGTATTCTAGGACCTCTTCCGCCAGCCACTCTGGCAGCCCATAG
CGCCCTTGCCTCCCTCTTTGCCGCCTATCCCGTCCTTGAAGCGGCGGGAG
AGATCGAAGGACTCCTTCTGAGGCTGCTGGTTGGGGAGAGCGTCGTGCTG
GCCGGCCTGGAGGAAGAGAAGCTGAGGTAGATGGGAAGCAGCAGCAAGAA
GGAGGATAAGCACGAGAAGAGGGATGCAGAGGGGGGAAAGGAAAAGCAGA
AAAAGCAGAAGAAGAAGTCGAAATCGTCCAGCAGCAGTAAAAGGAAGGAA
AAACGCAGGCGGGATGAGGAGGAGGAGGCGGAAGGGGAGGAAGAGAAAGC
AGCGGGCCTCGAGCACCACTCCAAGAGGCACAAACACAAACACAAGAAGG
ATAAGAAGAAGGATAAGAAGAAGGATGAGAGGAAAGACAAGAAGAGGGTA
AAACATGGCCTCGAGCCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTC
CCTTTCCTCTACCCTCCGAACCCTTCTCTTGTATCACCCCGCCATGGTGA
AGGAGGTGCTGCTGGTACTAGCGGCCTTGGAAGACGGTCAAGGCGTGGCC
TTGGATGGGCTTCCTTCCGTGGAGACGCGTCGACGAATGGGGGCCTTGCT
CGAGTCATTAGGCTTGCGTTCCGAGCTGCAGGGTCTCTCCGCCTCGACCA
CCTACTTCCTGTCCGAGGCGCAGGAAAAAGAAAATGACCCCCTTCTATCG
GCGACACTGCAAGCTATCGACGGTATTCTAGGACCTCTTCCGCCAGCCAC
TCTGGCAGCCCATAGCGCCCTTGCCTCCCTCTTTGCCGCCTATCCCGTCC
TTGAAGCGGCGGGAGAGATCGAAGGACTCCTTCTGAGGCTGCTGGTTGGG
GAGAGCGTCGTGCTGGCCGGCCTGGAGGAAGAGAAGCTGAGGTAGATGGG
AAGCAGCAGCAAGAAGGAGGATAAGCACGAGAAGAGGGATGCAGAGGGGG
GAAAGGAAAAGCAGAAAAAGCAGAAGAAGAAGTCGAAATCGTCCAGCAGC
AGTAAAAGGAAGGAAAAACGCAGGCGGGATGAGGAGGAGGAGGCGGAAGG
GGAGGAAGAGAAAGCAGCGGGCCTCGAGCACCACTCCAAGAGGCACAAAC
ACAAACACAAGAAGGATAAGAAGAAGGATAAGAAGAAGGATGAGAGGAAA
GACAAGAAGAGGGTAAAACATGGCCTCGAGCCATCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCTCCCTTTCCTCTACCCTCCGAACCCTTCTCTTGTATC
ACCCCGCCATGGTGAAGGAGGTGCTGCTGGTACTAGCGGCCTTGGAAGAC
GGTCAAGGCGTGGCCTTGGATGGGCTTCCTTCCGTGGAGACGCGTCGACG
AATGGGGGCCTTGCTCGAGTCATTAGGCTTGCGTTCCGAGCTGCAGGGTC
TCTCCGCCTCGACCACCTACTTCCTGTCCGAGGCGCAGGAAAAAGAAAAT
GACCCCCTTCTATCGGCGACACTGCAAGCTATCGACGGTATTCTAGGACC
TCTTCCGCCAGCCACTCTGGCAGCCCATAGCGCCCTTGCCTCCCTCTTTG
CCGCCTATCCCGTCCTTGAAGCGGCGGGAGAGATCGAAGGACTCCTTCTG
AGGCTGCTGGTTGGGGAGAGCGTCGTGCTGGCCGGCCTGGAGGAAGAGAA
GCTGAGGTAGATGGGAAGCAGCAGCAAGAAGGAGGATAAGCACGAGAAGA
GGGATGCAGAGGGGGGAAAGGAAAAGCAGAAAAAGCAGAAGAAGAAGTCG
AAATCGTCCAGCAGCAGTAAAAGGAAGGAAAAACGCAGGCGGGATGAGGA
GGAGGAGGCGGAAGGGGAGGAAGAGAAAGCAGCGGGCCTCGAGCACCACT
CCAAGAGGCACAAACACAAACACAAGAAGGATAAGAAGAAGGATAAGAAG
AAGGATGAGAGGAAAGACAAGAAGAGGGTAAAACATGGCCTCGAGCCATC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCTTTCCTCTACCCTCCGAA
CCCTTCTCTTGTATCACCCCGCCATGGTGAAGGAGGTGCTGCTGGTACTA
GCGGCCTTGGAAGACGGTCAAGGCGTGGCCTTGGATGGGCTTCCTTCCGT
GGAGACGCGTCGACGAATGGGGGCCTTGCTCGAGTCATTAGGCTTGCGTT
CCGAGCTGCAGGGTCTCTCCGCCTCGACCACCTACTTCCTGTCCGAGGCG
CAGGAAAAAGAAAATGACCCCCTTCTATCGGCGACACTGCAAGCTATCGA
CGGTATTCTAGGACCTCTTCCGCCAGCCACTCTGGCAGCCCATAGCGCCC
TTGCCTCCCTCTTTGCCGCCTATCCCGTCCTTGAAGCGGCGGGAGAGATC
GAAGGACTCCTTCTGAGGCTGCTGGTTGGGGAGAGCGTCGTGCTGGCCGG
CCTGGAGGAAGAGAAGCTGAGGTAGATGGGAAGCAGCAGCAAGAAGGAGG
ATAAGCACGAGAAGAGGGATGCAGAGGGGGGAAAGGAAAAGCAGAAAAAG
CAGAAGAAGAAGTCGAAATCGTCCAGCAGCAGTAAAAGGAAGGAAAAACG
CAGGCGGGATGAGGAGGAGGAGGCGGAAGGGGAGGAAGAGAAAGCAGCGG
GCCTCGAGCACCACTCCAAGAGGCACAAACACAAACACAAGAAGGATAAG
AAGAAGGATAAGAAGAAGGATGAGAGGAAAGACAAGAAGAGGGTAAAACA
TGGCCTCGAGCCATCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTCCCTTT
CCTCTACCCTCCGAACCCTTCTCTTGTATCACCCCGCCATGGTGAAGGAG
GTGCTGCTGGTACTAGCGGCCTTGGAAGACGGTCAAGGCGTGGCCTTGGA
TGGGCTTCCTTCCGTGGAGACGCGTCGACGAATGGGGGCCTTGCTCGAGT
CATTAGGCTTGCGTTCCGAGCTGCAGGGTCTCTCCGCCTCGACCACCTAC
TTCCTGTCCGAGGCGCAGGAAAAAGAAAATGACCCCCTTCTATCGGCGAC
ACTGCAAGCTATCGACGGTATTCTAGGACCTCTTCCGCCAGCCACTCTGG
CAGCCCATAGCGCCCTTGCCTCCCTCTTTGCCGCCTATCCCGTCCTTGAA
GCGGCGGGAGAGATCGAAGGACTCCTTCTGAGGCTGCTGGTTGGGGAGAG
CGTCGTGCTGGCCGGCCTGGAGGAAGAGAAGCTGAGGTAG

Synonyms

Publications