jgi.p|Nanoce1779_2|533063, mRNA_8953 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|533063
Unique NamemRNA_8953
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length522
Alignment locationscaffold_29:302551..303318 -

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Properties
Property NameValue
TranscriptId533149
TrackFilteredModels2
ProteinId533063
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:302551..303318 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533063gene_8953Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533063mRNA_8953-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8953CDS_8953Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8953 ID=mRNA_8953|Name=jgi.p|Nanoce1779_2|533063|organism=Nannochloropsis oceanica|type=mRNA|length=522bp
ATGTCATGCGCCGCTTGCTCCGGCAAAATCGAACGGGAGGTCGGGAAGAT
GGAGGGCGTCGAAGCGTGTGTGGTGTCCTTGTCGACGCAGCTCGCCAAAG
TGAGTCTGTATCAAGAGGCCAGCTCCCCCACCCGCCGAGGCCACGCACCC
TCCATTGGAATCCGTGACGTTCTCTACAAGATTGAGGCTCTCGGTTCGTA
TCCCTTCCTCCTTCTCTCCCTCCCTCCTTCCTTCCTTCTTTCCTTCCCTC
CCTCCCTCCCTCCCTGCTTCAGGCTTCAACCCAGTACCCCTCTCTCTCTC
CCACCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCTTTACCCCT
ACGCTGGTTCAAGGGGAGGGTGGCGGGGGCATCGAGGCCCTGCAGAAAAG
CCAAAAGCAGGAGACGGCGGAGTGGTGGTGAGGAGGGGAGGGAGGGAGGG
AGGGCTAGAGAGAGGACGGATACCCACAGGGAGCTGGGGGAGGGGAAGGA
GAAAGAGGCTGGTTGGCCTTAA
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protein sequence of jgi.p|Nanoce1779_2|533063

>mRNA_8953-protein ID=mRNA_8953-protein|Name=jgi.p|Nanoce1779_2|533063|organism=Nannochloropsis oceanica|type=polypeptide|length=174bp
MSCAACSGKIEREVGKMEGVEACVVSLSTQLAKVSLYQEASSPTRRGHAP
SIGIRDVLYKIEALGSYPFLLLSLPPSFLLSFPPSLPPCFRLQPSTPLSL
PPLPPSLPPSLPQALPLRWFKGRVAGASRPCRKAKSRRRRSGGEEGREGG
RARERTDTHRELGEGKEKEAGWP*
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mRNA from alignment at scaffold_29:302551..303318-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8953 ID=mRNA_8953|Name=jgi.p|Nanoce1779_2|533063|organism=Nannochloropsis oceanica|type=mRNA|length=768bp|location=Sequence derived from alignment at scaffold_29:302551..303318- (Nannochloropsis oceanica)
ATGTCATGCGCCGCTTGCTCCGGCAAAATCGAACGGGAGGTCGGGAAGAT
GGAGGGCGTCGAAGCGTGTGTGGTGTCCTTGTCGACGCAGGTAGGGAGGG
AGGGAGAGAGGGAGGGAGGGGTAGAGAGAACAGTGTGCGGTGGGAAGATA
GTGGGAGGAGTAAGAAGAAGGGAGAGAATGAAGCCGTACGTGTGTCCTCT
CCTTGCCTGTATGCAGGTACAGAGGGAAGGGAGGGAGTGAAGGAGGGAGA
GAAGATAGAGGCTGCTTTCCTCCCCTTGCCCACGCCCCTCCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCGCCCCCAGCTCGCCAAAGTGAG
TCTGTATCAAGAGGCCAGCTCCCCCACCCGCCGAGGCCACGCACCCTCCA
TTGGAATCCGTGACGTTCTCTACAAGATTGAGGCTCTCGGTTCGTATCCC
TTCCTCCTTCTCTCCCTCCCTCCTTCCTTCCTTCTTTCCTTCCCTCCCTC
CCTCCCTCCCTGCTTCAGGCTTCAACCCAGTACCCCTCTCTCTCTCCCAC
CCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGGCTTTACCCCTACGC
TGGTTCAAGGGGAGGGTGGCGGGGGCATCGAGGCCCTGCAGAAAAGCCAA
AAGCAGGAGACGGCGGAGTGGTGGTGAGGAGGGGAGGGAGGGAGGGAGGG
CTAGAGAGAGGACGGATACCCACAGGGAGCTGGGGGAGGGGAAGGAGAAA
GAGGCTGGTTGGCCTTAA
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Coding sequence (CDS) from alignment at scaffold_29:302551..303318-

>mRNA_8953 ID=mRNA_8953|Name=jgi.p|Nanoce1779_2|533063|organism=Nannochloropsis oceanica|type=CDS|length=1044bp|location=Sequence derived from alignment at scaffold_29:302551..303318- (Nannochloropsis oceanica)
CTCGCCAAAGTGAGTCTGTATCAAGAGGCCAGCTCCCCCACCCGCCGAGG
CCACGCACCCTCCATTGGAATCCGTGACGTTCTCTACAAGATTGAGGCTC
TCGGTTCGTATCCCTTCCTCCTTCTCTCCCTCCCTCCTTCCTTCCTTCTT
TCCTTCCCTCCCTCCCTCCCTCCCTGCTTCAGGCTTCAACCCAGTACCCC
TCTCTCTCTCCCACCCCTTCCTCCCTCCCTCCCTCCCTCCCTCCCTCAGG
CTTTACCCCTACGCTGGTTCAAGGGGAGGGTGGCGGGGGCATCGAGGCCC
TGCAGAAAAGCCAAAAGCAGGAGACGGCGGAGTGGTGGTGAGGAGGGGAG
GGAGGGAGGGAGGGCTAGAGAGAGGACGGATACCCACAGGGAGCTGGGGG
AGGGGAAGGAGAAAGAGGCTGGTTGGCCTTAAATGTCATGCGCCGCTTGC
TCCGGCAAAATCGAACGGGAGGTCGGGAAGATGGAGGGCGTCGAAGCGTG
TGTGGTGTCCTTGTCGACGCAGCTCGCCAAAGTGAGTCTGTATCAAGAGG
CCAGCTCCCCCACCCGCCGAGGCCACGCACCCTCCATTGGAATCCGTGAC
GTTCTCTACAAGATTGAGGCTCTCGGTTCGTATCCCTTCCTCCTTCTCTC
CCTCCCTCCTTCCTTCCTTCTTTCCTTCCCTCCCTCCCTCCCTCCCTGCT
TCAGGCTTCAACCCAGTACCCCTCTCTCTCTCCCACCCCTTCCTCCCTCC
CTCCCTCCCTCCCTCCCTCAGGCTTTACCCCTACGCTGGTTCAAGGGGAG
GGTGGCGGGGGCATCGAGGCCCTGCAGAAAAGCCAAAAGCAGGAGACGGC
GGAGTGGTGGTGAGGAGGGGAGGGAGGGAGGGAGGGCTAGAGAGAGGACG
GATACCCACAGGGAGCTGGGGGAGGGGAAGGAGAAAGAGGCTGGTTGGCC
TTAAATGTCATGCGCCGCTTGCTCCGGCAAAATCGAACGGGAGGTCGGGA
AGATGGAGGGCGTCGAAGCGTGTGTGGTGTCCTTGTCGACGCAG
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Synonyms
Publications