jgi.p|Nanoce1779_2|532996, mRNA_8951 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|532996
Unique NamemRNA_8951
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length237
Alignment locationscaffold_29:297636..298059 -

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Properties
Property NameValue
TranscriptId533082
TrackFilteredModels2
ProteinId532996
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:297636..298059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532996gene_8951Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|532996mRNA_8951-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8951CDS_8951Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8951 ID=mRNA_8951|Name=jgi.p|Nanoce1779_2|532996|organism=Nannochloropsis oceanica|type=mRNA|length=237bp
CAGGTCTGGATGCTCACGGGCGACTCGTCCGCAGCTGCCGAAGCAGTGGC
GCAGGGCATGGGCATCCGCCACGTCCAAGCCGGGACGCTGCCCGGCCAGA
AGGCGAAGAGAGTGCAGGCACTGCAGGCACAAGGCCACCGCGTGTGTATG
GTTGGCGATGGCATCAACGACTCGCCGGCTTTGGCTCAGGCGGACGTGGG
AGTGGCGATTGGAGCCGGTGCCCAGGTAGGTAGGTAG
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protein sequence of jgi.p|Nanoce1779_2|532996

>mRNA_8951-protein ID=mRNA_8951-protein|Name=jgi.p|Nanoce1779_2|532996|organism=Nannochloropsis oceanica|type=polypeptide|length=79bp
QVWMLTGDSSAAAEAVAQGMGIRHVQAGTLPGQKAKRVQALQAQGHRVCM
VGDGINDSPALAQADVGVAIGAGAQVGR*
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mRNA from alignment at scaffold_29:297636..298059-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8951 ID=mRNA_8951|Name=jgi.p|Nanoce1779_2|532996|organism=Nannochloropsis oceanica|type=mRNA|length=424bp|location=Sequence derived from alignment at scaffold_29:297636..298059- (Nannochloropsis oceanica)
CAGGTCTGGATGCTCACGGGCGACTCGTCCGCAGCTGCCGAAGCAGTGGC
GCAGGGCATGGGCATCCGCCACGTCCAAGCCGGGACGCTGCCCGGCCAGA
AGGCGAAGAGAGTGCAGGCACTGCAGGTACAGAGGGAGGGAGGGAGGGAG
GGAGGGAGGGAGGGAGGGAGGGAGGGAGAAAGCTTCTCCTACCAGTCCAG
GGATCCACTTCCCATTTGTGTCGTAAAATAGAAAATAGAACAAAAACCGA
CGACAACCACCGCAACGCCCTCCCTCCCTCCCTCTCCCCTTTCCTCCCTC
CCTCCCTCCCTAGGCACAAGGCCACCGCGTGTGTATGGTTGGCGATGGCA
TCAACGACTCGCCGGCTTTGGCTCAGGCGGACGTGGGAGTGGCGATTGGA
GCCGGTGCCCAGGTAGGTAGGTAG
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Coding sequence (CDS) from alignment at scaffold_29:297636..298059-

>mRNA_8951 ID=mRNA_8951|Name=jgi.p|Nanoce1779_2|532996|organism=Nannochloropsis oceanica|type=CDS|length=474bp|location=Sequence derived from alignment at scaffold_29:297636..298059- (Nannochloropsis oceanica)
GCACAAGGCCACCGCGTGTGTATGGTTGGCGATGGCATCAACGACTCGCC
GGCTTTGGCTCAGGCGGACGTGGGAGTGGCGATTGGAGCCGGTGCCCAGG
TAGGTAGGTAGCAGGTCTGGATGCTCACGGGCGACTCGTCCGCAGCTGCC
GAAGCAGTGGCGCAGGGCATGGGCATCCGCCACGTCCAAGCCGGGACGCT
GCCCGGCCAGAAGGCGAAGAGAGTGCAGGCACTGCAGGCACAAGGCCACC
GCGTGTGTATGGTTGGCGATGGCATCAACGACTCGCCGGCTTTGGCTCAG
GCGGACGTGGGAGTGGCGATTGGAGCCGGTGCCCAGGTAGGTAGGTAGCA
GGTCTGGATGCTCACGGGCGACTCGTCCGCAGCTGCCGAAGCAGTGGCGC
AGGGCATGGGCATCCGCCACGTCCAAGCCGGGACGCTGCCCGGCCAGAAG
GCGAAGAGAGTGCAGGCACTGCAG
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Synonyms
Publications