jgi.p|Nanoce1779_2|574550, mRNA_895 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|574550
Unique Name	mRNA_895
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3265
Alignment location	scaffold_2:683020..686850 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	574636
Track	FilteredModels2
ProteinId	574550

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_2	supercontig	scaffold_2:683020..686850 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574550	gene_895	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|574550	mRNA_895-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_895	CDS_895	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_2:683020..686850+
coding sequence from alignment at scaffold_2:683020..686850+

mRNA sequence

>mRNA_895 ID=mRNA_895|Name=jgi.p|Nanoce1779_2|574550|organism=Nannochloropsis oceanica|type=mRNA|length=3265bp
CAGCACACACAGCAACTCGACAAAGTCAACACGGGGACCTTGGAGCGCGA
GCGACGCTTATTTCGCCTCTTTGCTTTCTAGCTCGGGATTACACCATCAT
CATGGGGATGCACCGGGACGGCGGGCACGGGACGTCCTACTCGGAAAAGT
ATTTTGACGGGGACAGACCTGCGGCCATGTACAATAAGAATGTTGAGTGG
CTCCGATACGCTCATTTCTGGTGGTTGTATCTGGGGTTTGTCGCATTCTT
TGTTACGCTTTTGCGATTGACGGTCTTGAGCAAGGCTGAGGATTGGGGAA
TGGTTTTGATGGTGACTCATGTGGTGCACAACGTGGTATTCTTCTACCTC
TTCCACTGGATCAAGGGCTCCCCCGACAATTTTAGTCAAGGCGAATTCAA
CGGACTCACGCTTTGGGAACAAATCGACGACGGCATCCCCTGGACCAAGA
CCAAAAAGCTCTTCTTCCTTATACATACTGTCTTGGTGTTTGCTGCCTCC
TACGTGACTGATTACGACTTGAATTATCTGGCGATGAATGGCCCTGTGTA
TATTCTGTTGGGGATCATACCCAAGATCCCGGAGATGCACCGTGTGCGTG
TGTTTGGCTGGAACAAGACGACAGGGATCGATGACGTTAATGAGGATGCG
CTGGCGTACTCAGCCACCGCAGCCGGGAGTGCCGCCACGTTAGGCACCAA
GAAGAGTCGGTGAAACCAGAGAGTATTGAGAGAAGGAGCATCCGAAAAAG
TAGATGAGATATACATATGTATGGTGTATTTGCGAAGCAATATGCGTTTT
TGGGTGCTGTCTTGTGCCTGTTCTATATGAGTCACCATGGCGCGCGCGTG
AATGATGGTGAGAGGCGACCTGGCAACCTAATTTATTGGAAACAAGGGGA
ACGGGGGGACGGCATCTGTGTTTTTGGGGTAGGTATTTCGTCTAAGTAAG
CCACACAGAAATGGGGAGGCGAAGAGAACTGTAATTGTATAAAAAGCTAC
GGATTCAAACGCTGCGGTGCCCTTTCTCCTGGGTGATAACGGACGGCGGG
CGGGGGGGCCCGGATGGAAGTAAATGGGCCGCGGTCTTGCCGGTCCCAGC
ACGCTTTGGAAGAGACTGACGGGGGGGATGTAGGAACGGAGAAATGAAAA
CCCAAAAAAGAAGAGAAACTTACACTTGAAAGCAATCTCTGCTTTCTTGT
TCCAGTGCAATTTGAATGCTCTTCAACCGACAGACGTATTCGTGTGGTGA
GAAGGCGAGGTTGCACCCGCGGGCCGAAACAAGGGGATTTGTAGCCTGTG
GAGTGACAAGGTTGATGGCAACAATATGGTTATGTGTGCGAGCAGGGTGG
CTCAACAGGCGTGCGACCCAGTATGCCCGCACCATTTCCAGGGTATTCTC
CTCACACAACCTAAAGACAGGGCATGTACAATTTCCAAGCTGCGGATCCC
CAAAATGACCTTGGCCTCACTCACCATCACCACCACGGGGAGCAGCATCC
GCAACGAGCCCTTGTTTGTGGCCGAGGTATTGCAATCAACTGGCTTGTCA
CGTGGAGCGGCGTTGCGCTTTTCATTTCAGTACACCATCAAGGATGGTTG
ACTTACCAAACCCTGACACCTCCATCTTTGCCTCGTCATTCTCCTCCTCC
TCACTACCTCAATTGTTGCAGATCCTGGTGGACGAAATGCAGCTGAACAT
CTGCTATAGCTGGCGCGGTGGCGAAAGCTAGGGGGATTTTTCCAGCGTGG
GATGCCTGGCACCCTCTGCGTTTCGCTTGGGGCTGGACGATTCGCAGGGC
GGCAGAGAGCTGCGCATTTCCTACACAAATCAATTTAGCTTAATGATCCT
TCAGTGCACACCCCGAGTCAACACTACGATATCCATGAACAGGCGAACTG
CCTTCCGGAAAAAAGAAGGAGCTACTTCTGAGTATCAACGTTGAGACTCT
CAACCCCGATCTTACGGGGCGACTGACCCACCATCTCGGCTTGGAAAACA
ATGTCCTTCCCCGTGCCTACTGTGAACTAGTCCTGACAGCGCTCCTCCTC
TGGATCACTTGGGTCAATAATTTGTACTGTACCAAAGAGCATGCAACGAC
CATCCATGAACTACATCTCTCGCTTGGACGCTGATGGAGTCGTCCATCAA
TTTTTTAGGATGGGCACTACTCTGCTAGAGCATCTTAGCTTGCTCTCACA
GCTCGTCATATTGGCGTTGCTTGCCTACGGTTACAAGGCTTACCCAAGAC
ACCGTTTCCATTCGTCACACTCGCCTCTTATCGGGGGGCGTGGGTACCTA
TATTATTCTCACCCTCTGCCATGCAGCCTGCTGCAACACCAGCCGGGACT
AAGCAAAACAGCACCAAGACCTTGTCTTGTCCTCCTCTTCTTCATCCTAC
CCCTTTTCTTATCCCAAAAGCAGAACAAATTTTGCCAAGCCTACAATCTG
GGATTATACATACTTCAATGCCTTCTCTTTCTCCTCACCATTATCAGCGT
CAACTGGTCCATTTCTTCCCTCCGCTCCTCCCTAAACACCTCCCCCTGGA
GAGTAACCAGCACCCCTCTCACCTACTTCGCTCTTCAACATCTTCACTTC
CTCCGAGCCCTCTTCCTCATTTACCTCTTCCTTCCCACTCTTCTAATGTT
TTCGCGTCTCATGCTATTTTCCTGCTCCTATGCTTGGATAGATTCCATTT
TACAACAGTCCATCAACTTAGCGATACTCGTAGCCCTCGCCATAAATTTT
GCGCCAAATGACAAGACATTTTATTATAACCCCTTAGGCCTGGCGGCACA
ATCGCGCATGCCCTCACTTTATCGTAGCGGCAGTTGTGAGAATGGTGTCA
GGAGAAGAGGAGGAAGAGGAAGAGGAGGAGGGGGAAGAGGAGCGATATTT
CATCCTGCCGAACGGCTACGGCAGCTGCGGGTACGTAATAAAGGGATTCA
ACAGTGAATGCTGCTGCTACTGCAAACGTAGAAAGTAGTAATGGTTTTGT
AAAGTAGCATGAAAATGTTTCATGTTATATCAAAAAGTGATATCAACTTG
TGCAGTTTATGAAAGAATAGACTGCGAATGATAATAGGGGAGATGGAAAT
TAAAGAGTAAACTCACTGTGAGCGCTTTTCTTAGATCCCGATAATTCTGC
ACCATGATTTGTTTCATAGTTGGGCTGTGGAGCGGTATAGCAAGTACTAC
ACAATCGTAGTCGTCTTAGCATCTCCAATTGTCCACGTCCCCATTCAACA
GCAAATTTCGCCCCC

protein sequence of jgi.p|Nanoce1779_2|574550

>mRNA_895-protein ID=mRNA_895-protein|Name=jgi.p|Nanoce1779_2|574550|organism=Nannochloropsis oceanica|type=polypeptide|length=204bp
MGMHRDGGHGTSYSEKYFDGDRPAAMYNKNVEWLRYAHFWWLYLGFVAFF
VTLLRLTVLSKAEDWGMVLMVTHVVHNVVFFYLFHWIKGSPDNFSQGEFN
GLTLWEQIDDGIPWTKTKKLFFLIHTVLVFAASYVTDYDLNYLAMNGPVY
ILLGIIPKIPEMHRVRVFGWNKTTGIDDVNEDALAYSATAAGSAATLGTK
KSR*

mRNA from alignment at scaffold_2:683020..686850+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_895 ID=mRNA_895|Name=jgi.p|Nanoce1779_2|574550|organism=Nannochloropsis oceanica|type=mRNA|length=3831bp|location=Sequence derived from alignment at scaffold_2:683020..686850+ (Nannochloropsis oceanica)
CAGCACACACAGCAACTCGACAAAGTCAACACGGGGACCTTGGAGCGCGA
GCGACGCTTATTTCGCCTCTTTGCTTTCTAGCTCGGGATTACACCATCAT
CATGTAAGTGCGCCGTGGACGGAGACGGATAGAGACTTCGTGCGGTAGCA
TGATAGGACGACAGGTGTAGGGTGCTCATGAAGATTTCTGAATCGTGATC
GCGGCGCGATTGTGATGCGGCCTTATTTGCGGGTTTTCTTACGAACGCAC
CCACTTCAATTTTGGAGTGCTCGTGCTCCGAGAGGGGTGCAAGGAAAGCC
CGGGGCTTCCCCCCCTATCTATGGACATGTTTTGGGCGTCGCTAACACTC
GTTTTATGGCTTGCTCATCATGAGTTGTGATGCTGTCCCTCATTTGCGGA
GACCAGCAGGAGAGGGAGGCCTTTATTCCGTCCTGCCCCCCATGGGCAAT
TCTCGTATCTTTTTACAAGGGACCATACTAACTACATCCTTTCCTTCCTC
CGTTTTTTACTGGCCCCTATACACAGGGGGATGCACCGGGACGGCGGGCA
CGGGACGTCCTACTCGGAAAAGTATTTTGACGGGGACAGACCTGCGGCCA
TGTACAATAAGAATGTTGAGTGGCTCCGATACGCTCATTTCTGGTGGTTG
TATCTGGGGTTTGTCGCATTCTTTGTTACGCTTTTGCGATTGACGGTCTT
GAGCAAGGCTGAGGATTGGGGAATGGTTTTGATGGTGACTCATGTGGTGC
ACAACGTGGTGAGTGGGCGAGAAAGAAATGGGAAGAAGGCGGAAAAACGG
AGACGAGACCAGAAGTTGGATTGCAAAAAGAAAAGCCGACGGTAACTCAA
ATCCGTCGAGCTTACCAGTCATCGAATCACCTCATAACCCCACGAGCACA
GGTATTCTTCTACCTCTTCCACTGGATCAAGGGCTCCCCCGACAATTTTA
GTCAAGGCGAATTCAACGGACTCACGCTTTGGGAACAAATCGACGACGGC
ATCCCCTGGACCAAGACCAAAAAGCTCTTCTTCCTTATACATACTGTCTT
GGTGTTTGCTGCCTCCTACGTGACTGATTACGACTTGAATTATCTGGCGA
TGAATGGCCCTGTGTATATTCTGTTGGGGATCATACCCAAGATCCCGGAG
ATGCACCGTGTGCGTGTGTTTGGCTGGAACAAGACGACAGGGATCGATGA
CGTTAATGAGGATGCGCTGGCGTACTCAGCCACCGCAGCCGGGAGTGCCG
CCACGTTAGGCACCAAGAAGAGTCGGTGAAACCAGAGAGTATTGAGAGAA
GGAGCATCCGAAAAAGTAGATGAGATATACATATGTATGGTGTATTTGCG
AAGCAATATGCGTTTTTGGGTGCTGTCTTGTGCCTGTTCTATATGAGTCA
CCATGGCGCGCGCGTGAATGATGGTGAGAGGCGACCTGGCAACCTAATTT
ATTGGAAACAAGGGGAACGGGGGGACGGCATCTGTGTTTTTGGGGTAGGT
ATTTCGTCTAAGTAAGCCACACAGAAATGGGGAGGCGAAGAGAACTGTAA
TTGTATAAAAAGCTACGGATTCAAACGCTGCGGTGCCCTTTCTCCTGGGT
GATAACGGACGGCGGGCGGGGGGGCCCGGATGGAAGTAAATGGGCCGCGG
TCTTGCCGGTCCCAGCACGCTTTGGAAGAGACTGACGGGGGGGATGTAGG
AACGGAGAAATGAAAACCCAAAAAAGAAGAGAAACTTACACTTGAAAGCA
ATCTCTGCTTTCTTGTTCCAGTGCAATTTGAATGCTCTTCAACCGACAGA
CGTATTCGTGTGGTGAGAAGGCGAGGTTGCACCCGCGGGCCGAAACAAGG
GGATTTGTAGCCTGTGGAGTGACAAGGTTGATGGCAACAATATGGTTATG
TGTGCGAGCAGGGTGGCTCAACAGGCGTGCGACCCAGTATGCCCGCACCA
TTTCCAGGGTATTCTCCTCACACAACCTAAAGACAGGGCATGTACAATTT
CCAAGCTGCGGATCCCCAAAATGACCTTGGCCTCACTCACCATCACCACC
ACGGGGAGCAGCATCCGCAACGAGCCCTTGTTTGTGGCCGAGGTATTGCA
ATCAACTGGCTTGTCACGTGGAGCGGCGTTGCGCTTTTCATTTCAGTACA
CCATCAAGGATGGTTGACTTACCAAACCCTGACACCTCCATCTTTGCCTC
GTCATTCTCCTCCTCCTCACTACCTCAATTGTTGCAGATCCTGGTGGACG
AAATGCAGCTGAACATCTGCTATAGCTGGCGCGGTGGCGAAAGCTAGGGG
GATTTTTCCAGCGTGGGATGCCTGGCACCCTCTGCGTTTCGCTTGGGGCT
GGACGATTCGCAGGGCGGCAGAGAGCTGCGCATTTCCTACACAAATCAAT
TTAGCTTAATGATCCTTCAGTGCACACCCCGAGTCAACACTACGATATCC
ATGAACAGGCGAACTGCCTTCCGGAAAAAAGAAGGAGCTACTTCTGAGTA
TCAACGTTGAGACTCTCAACCCCGATCTTACGGGGCGACTGACCCACCAT
CTCGGCTTGGAAAACAATGTCCTTCCCCGTGCCTACTGTGAACTAGTCCT
GACAGCGCTCCTCCTCTGGATCACTTGGGTCAATAATTTGTACTGTACCA
AAGAGCATGCAACGACCATCCATGAACTACATCTCTCGCTTGGACGCTGA
TGGAGTCGTCCATCAATTTTTTAGGATGGGCACTACTCTGCTAGAGCATC
TTAGCTTGCTCTCACAGCTCGTCATATTGGCGTTGCTTGCCTACGGTTAC
AAGGCTTACCCAAGACACCGTTTCCATTCGTCACACTCGCCTCTTATCGG
GGGGCGTGGGTACCTATATTATTCTCACCCTCTGCCATGCAGCCTGCTGC
AACACCAGCCGGGACTAAGCAAAACAGCACCAAGACCTTGTCTTGTCCTC
CTCTTCTTCATCCTACCCCTTTTCTTATCCCAAAAGCAGAACAAATTTTG
CCAAGCCTACAATCTGGGATTATACATACTTCAATGCCTTCTCTTTCTCC
TCACCATTATCAGCGTCAACTGGTCCATTTCTTCCCTCCGCTCCTCCCTA
AACACCTCCCCCTGGAGAGTAACCAGCACCCCTCTCACCTACTTCGCTCT
TCAACATCTTCACTTCCTCCGAGCCCTCTTCCTCATTTACCTCTTCCTTC
CCACTCTTCTAATGTTTTCGCGTCTCATGCTATTTTCCTGCTCCTATGCT
TGGATAGATTCCATTTTACAACAGTCCATCAACTTAGCGATACTCGTAGC
CCTCGCCATAAATTTTGCGCCAAATGACAAGACATTTTATTATAACCCCT
TAGGCCTGGCGGCACAATCGCGCATGCCCTCACTTTATCGTAGCGGCAGT
TGTGAGAATGGTGTCAGGAGAAGAGGAGGAAGAGGAAGAGGAGGAGGGGG
AAGAGGAGCGATATTTCATCCTGCCGAACGGCTACGGCAGCTGCGGGTAC
GTAATAAAGGGATTCAACAGTGAATGCTGCTGCTACTGCAAACGTAGAAA
GTAGTAATGGTTTTGTAAAGTAGCATGAAAATGTTTCATGTTATATCAAA
AAGTGATATCAACTTGTGCAGTTTATGAAAGAATAGACTGCGAATGATAA
TAGGGGAGATGGAAATTAAAGAGTAAACTCACTGTGAGCGCTTTTCTTAG
ATCCCGATAATTCTGCACCATGATTTGTTTCATAGTTGGGCTGTGGAGCG
GTATAGCAAGTACTACACAATCGTAGTCGTCTTAGCATCTCCAATTGTCC
ACGTCCCCATTCAACAGCAAATTTCGCCCCC

Coding sequence (CDS) from alignment at scaffold_2:683020..686850+

>mRNA_895 ID=mRNA_895|Name=jgi.p|Nanoce1779_2|574550|organism=Nannochloropsis oceanica|type=CDS|length=1836bp|location=Sequence derived from alignment at scaffold_2:683020..686850+ (Nannochloropsis oceanica)
ATGGGGATGCACCGGGACGGCGGGCACGGGACGTCCTACTCGGAAAAGTA
TTTTGACGGGGACAGACCTGCGGCCATGTACAATAAGAATGTTGAGTGGC
TCCGATACGCTCATTTCTGGTGGTTGTATCTGGGGTTTGTCGCATTCTTT
GTTACGCTTTTGCGATTGACGGTCTTGAGCAAGGCTGAGGATTGGGGAAT
GGTTTTGATGGTGACTCATGTGGTGCACAACGTGGTATTCTTCTACCTCT
TCCACTGGATCAAGGGCTCCCCCGACAATTTTAGTCAAGGCGAATTCAAC
GGACTCACGCTTTGGGAACAAATCGACGACGGCATCCCCTGGACCAAGAC
CAAAAAGCTCTTCTTCCTTATACATACTGTCTTGGTGTTTGCTGCCTCCT
ACGTGACTGATTACGACTTGAATTATCTGGCGATGAATGGCCCTGTGTAT
ATTCTGTTGGGGATCATACCCAAGATCCCGGAGATGCACCGTGTGCGTGT
GTTTGGCTGGAACAAGACGACAGGGATCGATGACGTTAATGAGGATGCGC
TGGCGTACTCAGCCACCGCAGCCGGGAGTGCCGCCACGTTAGGCACCAAG
AAGAGTCGGTGAATGGGGATGCACCGGGACGGCGGGCACGGGACGTCCTA
CTCGGAAAAGTATTTTGACGGGGACAGACCTGCGGCCATGTACAATAAGA
ATGTTGAGTGGCTCCGATACGCTCATTTCTGGTGGTTGTATCTGGGGTTT
GTCGCATTCTTTGTTACGCTTTTGCGATTGACGGTCTTGAGCAAGGCTGA
GGATTGGGGAATGGTTTTGATGGTGACTCATGTGGTGCACAACGTGGTAT
TCTTCTACCTCTTCCACTGGATCAAGGGCTCCCCCGACAATTTTAGTCAA
GGCGAATTCAACGGACTCACGCTTTGGGAACAAATCGACGACGGCATCCC
CTGGACCAAGACCAAAAAGCTCTTCTTCCTTATACATACTGTCTTGGTGT
TTGCTGCCTCCTACGTGACTGATTACGACTTGAATTATCTGGCGATGAAT
GGCCCTGTGTATATTCTGTTGGGGATCATACCCAAGATCCCGGAGATGCA
CCGTGTGCGTGTGTTTGGCTGGAACAAGACGACAGGGATCGATGACGTTA
ATGAGGATGCGCTGGCGTACTCAGCCACCGCAGCCGGGAGTGCCGCCACG
TTAGGCACCAAGAAGAGTCGGTGAATGGGGATGCACCGGGACGGCGGGCA
CGGGACGTCCTACTCGGAAAAGTATTTTGACGGGGACAGACCTGCGGCCA
TGTACAATAAGAATGTTGAGTGGCTCCGATACGCTCATTTCTGGTGGTTG
TATCTGGGGTTTGTCGCATTCTTTGTTACGCTTTTGCGATTGACGGTCTT
GAGCAAGGCTGAGGATTGGGGAATGGTTTTGATGGTGACTCATGTGGTGC
ACAACGTGGTATTCTTCTACCTCTTCCACTGGATCAAGGGCTCCCCCGAC
AATTTTAGTCAAGGCGAATTCAACGGACTCACGCTTTGGGAACAAATCGA
CGACGGCATCCCCTGGACCAAGACCAAAAAGCTCTTCTTCCTTATACATA
CTGTCTTGGTGTTTGCTGCCTCCTACGTGACTGATTACGACTTGAATTAT
CTGGCGATGAATGGCCCTGTGTATATTCTGTTGGGGATCATACCCAAGAT
CCCGGAGATGCACCGTGTGCGTGTGTTTGGCTGGAACAAGACGACAGGGA
TCGATGACGTTAATGAGGATGCGCTGGCGTACTCAGCCACCGCAGCCGGG
AGTGCCGCCACGTTAGGCACCAAGAAGAGTCGGTGA

Synonyms

Publications