jgi.p|Nanoce1779_2|604598, mRNA_8949 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604598
Unique NamemRNA_8949
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length532
Alignment locationscaffold_29:296493..297024 -

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Properties
Property NameValue
TranscriptId604684
TrackFilteredModels2
ProteinId604598
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:296493..297024 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604598gene_8949Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604598mRNA_8949-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8949CDS_8949Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8949 ID=mRNA_8949|Name=jgi.p|Nanoce1779_2|604598|organism=Nannochloropsis oceanica|type=mRNA|length=532bp
TGCGCATGTATCGGCGGCCGGATCTTGATACCATAGGGCGGACCCGATCC
CTGCACTCCCTGCGGCACGGAGCGAGGGAAGGAGGGAGGGAGAGAGAGGC
GTCACAATTGCAGCCCCTGGTGCTTGGTGAAAATGGAGGGGACGAAGGAG
GGGACGAGGAAGAAGGTGGTGCAAGGAGAGGGCGACAGCAAGGGCATTGG
CGCATGGATACAAACGGTTTGGTCGGTTCCCCCTCCCTCTCCCTCGCCTC
AGAACGTGCCCGCGCCAGCATGACGCATCGTGCAACCTCCCAGCTCTCGC
GGGTCTCTCGCCTGTGGCAACGCTTGCGGGGATACTCGCAGCTGGAGGAG
GAAGGCGCAGGGAGAGAGGGCGAGGACAAAGGAGGAGGATTAGGTGGTTT
GTCGTCCTTGGAGAGGAGGGAGGGAGAAGAGGGGGGAAGGGGGGGGGGGG
AGGAGTATTATGATGATTCAGCTAGGCCGGGAGGGCAATTCTGGTGGGGG
ACACCGGGACTCAGTTTAGATCTTCGTTATAA
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protein sequence of jgi.p|Nanoce1779_2|604598

>mRNA_8949-protein ID=mRNA_8949-protein|Name=jgi.p|Nanoce1779_2|604598|organism=Nannochloropsis oceanica|type=polypeptide|length=168bp
MYRRPDLDTIGRTRSLHSLRHGAREGGREREASQLQPLVLGENGGDEGGD
EEEGGARRGRQQGHWRMDTNGLVGSPSLSLASERARASMTHRATSQLSRV
SRLWQRLRGYSQLEEEGAGREGEDKGGGLGGLSSLERREGEEGGRGGGEE
YYDDSARPGGQFWWGTPG
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mRNA from alignment at scaffold_29:296493..297024-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8949 ID=mRNA_8949|Name=jgi.p|Nanoce1779_2|604598|organism=Nannochloropsis oceanica|type=mRNA|length=532bp|location=Sequence derived from alignment at scaffold_29:296493..297024- (Nannochloropsis oceanica)
TGCGCATGTATCGGCGGCCGGATCTTGATACCATAGGGCGGACCCGATCC
CTGCACTCCCTGCGGCACGGAGCGAGGGAAGGAGGGAGGGAGAGAGAGGC
GTCACAATTGCAGCCCCTGGTGCTTGGTGAAAATGGAGGGGACGAAGGAG
GGGACGAGGAAGAAGGTGGTGCAAGGAGAGGGCGACAGCAAGGGCATTGG
CGCATGGATACAAACGGTTTGGTCGGTTCCCCCTCCCTCTCCCTCGCCTC
AGAACGTGCCCGCGCCAGCATGACGCATCGTGCAACCTCCCAGCTCTCGC
GGGTCTCTCGCCTGTGGCAACGCTTGCGGGGATACTCGCAGCTGGAGGAG
GAAGGCGCAGGGAGAGAGGGCGAGGACAAAGGAGGAGGATTAGGTGGTTT
GTCGTCCTTGGAGAGGAGGGAGGGAGAAGAGGGGGGAAGGGGGGGGGGGG
AGGAGTATTATGATGATTCAGCTAGGCCGGGAGGGCAATTCTGGTGGGGG
ACACCGGGACTCAGTTTAGATCTTCGTTATAA
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Coding sequence (CDS) from alignment at scaffold_29:296493..297024-

>mRNA_8949 ID=mRNA_8949|Name=jgi.p|Nanoce1779_2|604598|organism=Nannochloropsis oceanica|type=CDS|length=505bp|location=Sequence derived from alignment at scaffold_29:296493..297024- (Nannochloropsis oceanica)
ATGTATCGGCGGCCGGATCTTGATACCATAGGGCGGACCCGATCCCTGCA
CTCCCTGCGGCACGGAGCGAGGGAAGGAGGGAGGGAGAGAGAGGCGTCAC
AATTGCAGCCCCTGGTGCTTGGTGAAAATGGAGGGGACGAAGGAGGGGAC
GAGGAAGAAGGTGGTGCAAGGAGAGGGCGACAGCAAGGGCATTGGCGCAT
GGATACAAACGGTTTGGTCGGTTCCCCCTCCCTCTCCCTCGCCTCAGAAC
GTGCCCGCGCCAGCATGACGCATCGTGCAACCTCCCAGCTCTCGCGGGTC
TCTCGCCTGTGGCAACGCTTGCGGGGATACTCGCAGCTGGAGGAGGAAGG
CGCAGGGAGAGAGGGCGAGGACAAAGGAGGAGGATTAGGTGGTTTGTCGT
CCTTGGAGAGGAGGGAGGGAGAAGAGGGGGGAAGGGGGGGGGGGGAGGAG
TATTATGATGATTCAGCTAGGCCGGGAGGGCAATTCTGGTGGGGGACACC
GGGAC
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Synonyms
Publications