jgi.p|Nanoce1779_2|568900, mRNA_8948 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|568900
Unique Name	mRNA_8948
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1671
Alignment location	scaffold_29:292811..294481 -

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Properties


Property Name	Value
TranscriptId	568986
Track	FilteredModels2
ProteinId	568900

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:292811..294481 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|568900	gene_8948	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8948	CDS_8948	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|568900	mRNA_8948-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:292811..294481-
coding sequence from alignment at scaffold_29:292811..294481-

mRNA sequence

>mRNA_8948 ID=mRNA_8948|Name=jgi.p|Nanoce1779_2|568900|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp
ATGACGGACCTCCCTGTTGGTTCGAAACGCTCCCTCCGCGGCTCCGTCAC
CAACAGCGTCATTACAAGCGAAGGTACGCGCATCCTGCAGACAGCCGTGG
ACCACCACCATTCTCGTGTTATCTTTGTGCCAGCCCGTGAACCATTTTCG
CGCAGGAACATTCATCATTTCGCGAAGCATGGAGAGGCGGTTGGGATGGG
GGGACACCGAAACGAGACAGACAACGTGCGTGCGATCCACGTGGATGACA
TGGAGGAATTCGTAGAGGAGCGGCGGGAATATGTGAGGCATCCGGATGAT
GTATTGATGCGGCGTGAAGATTACGTAGATCATGACGTGGAGTTGGACGA
ACTCTTGGAGGAGGTGAAGCTGCCCTTCCCGTTCATATCCACGGGGGGTT
CCCACAAAGTGGTTACAGCACACGGCATCGATGACCATCACGATGCGGAG
GCTCACGATTATTTTGGCTCGTCCATGACGAATATGGGGAAGAATGCCAA
GACGGGCTTGACGACCATTGCGGTGGGTGCGCCCGGGGCCTTGGACACGA
GCGGAATTGTCTACTTTGTGGAAGTCAACGCTGAGGGCGAGGTGGAGGAT
TACACATACCTGACACATGAAGATTTCGAAGAGGCCGTGAACGAGGAAAT
GAGAGGAAGGAGGCAAGGAAAGAACGGGGGATGGGGACCTAACACGGCCT
TGGGATGGGCGCTGGAGAATGTTGGCGATTTAGACGGGGACGGGGTCAAT
GACCTGGCCGTGGGCGCACTCGGCTACCCGGGGGGGAGCTCCAAGGGTGC
CGTGTTCATTTTCTTCTTGACAGAAGATCACGGAATTAAAAGCCACACAG
TGATCACGCAGGATATGGGTGGCTTTCCGCACACGTTGAATGAGCACTGG
CGCTTTGGGTCCTCTCTGACGCGGTTGGGGGACTTGGACGGGGATGGCGT
GACGGAGCTTGCGGTTGGTGCCATGGGCATGGGCAAGGAGCGTGGGGGGG
TCTTCATCCTCTTTCTCAATAAGGATGGAAGCGTAAAGAACACCCAACTC
ATCTCCTCGCTACACGGTTGGGACCACAAATTGAGCGTACAGGACCAGTT
TGGCTCGGCGGTACGTGGGATCGGAGACTTAGATGGGGATGGCATTCCCG
ATATGGTTGTATCGGGGGATGGGTTCCCTTCGGGTGAGGGGTTCGGTGCA
GTGTGGGTCCTTTTCCTGAACATTGACGGCTCGGTCAAATATTGGCGTCG
CCTGGACGAGATGGACATGGCTTTGGAAGCCGAAGCCTTATTTGGTGCCT
CTATTGCGAACATGGGTGACTTGAATGGGGATGGACTACCGGAACTGTTG
GTGGGCGCACCCGGCATGCATGAATTGAGCGGAGAAGCGTACATTATTTC
TTTGAACAAGGACGGCAAAATTCAGCACTTTAAGGCGCTGACGGAGGACG
ACCACGAGCTGGACGAGTTGGTGAATACGAACGACGAGTTTGGGTGGTCG
GTCGCCAGCCTCGGGGACTTGGATGGGGATGGAATTCCGGACTTGGCTGT
TGCCGCTGAAACTTCACCGAGCCACACCAATGTGCCGTCGATCCACATGA
TCTACCTGGCGCCACAGGATATGGGTGCGAAAGAGGCAGCGGCACAAGAC
CCCAGGCGTCGTTTGCGATAG

protein sequence of jgi.p|Nanoce1779_2|568900

>mRNA_8948-protein ID=mRNA_8948-protein|Name=jgi.p|Nanoce1779_2|568900|organism=Nannochloropsis oceanica|type=polypeptide|length=557bp
MTDLPVGSKRSLRGSVTNSVITSEGTRILQTAVDHHHSRVIFVPAREPFS
RRNIHHFAKHGEAVGMGGHRNETDNVRAIHVDDMEEFVEERREYVRHPDD
VLMRREDYVDHDVELDELLEEVKLPFPFISTGGSHKVVTAHGIDDHHDAE
AHDYFGSSMTNMGKNAKTGLTTIAVGAPGALDTSGIVYFVEVNAEGEVED
YTYLTHEDFEEAVNEEMRGRRQGKNGGWGPNTALGWALENVGDLDGDGVN
DLAVGALGYPGGSSKGAVFIFFLTEDHGIKSHTVITQDMGGFPHTLNEHW
RFGSSLTRLGDLDGDGVTELAVGAMGMGKERGGVFILFLNKDGSVKNTQL
ISSLHGWDHKLSVQDQFGSAVRGIGDLDGDGIPDMVVSGDGFPSGEGFGA
VWVLFLNIDGSVKYWRRLDEMDMALEAEALFGASIANMGDLNGDGLPELL
VGAPGMHELSGEAYIISLNKDGKIQHFKALTEDDHELDELVNTNDEFGWS
VASLGDLDGDGIPDLAVAAETSPSHTNVPSIHMIYLAPQDMGAKEAAAQD
PRRRLR*

mRNA from alignment at scaffold_29:292811..294481-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8948 ID=mRNA_8948|Name=jgi.p|Nanoce1779_2|568900|organism=Nannochloropsis oceanica|type=mRNA|length=1671bp|location=Sequence derived from alignment at scaffold_29:292811..294481- (Nannochloropsis oceanica)
ATGACGGACCTCCCTGTTGGTTCGAAACGCTCCCTCCGCGGCTCCGTCAC
CAACAGCGTCATTACAAGCGAAGGTACGCGCATCCTGCAGACAGCCGTGG
ACCACCACCATTCTCGTGTTATCTTTGTGCCAGCCCGTGAACCATTTTCG
CGCAGGAACATTCATCATTTCGCGAAGCATGGAGAGGCGGTTGGGATGGG
GGGACACCGAAACGAGACAGACAACGTGCGTGCGATCCACGTGGATGACA
TGGAGGAATTCGTAGAGGAGCGGCGGGAATATGTGAGGCATCCGGATGAT
GTATTGATGCGGCGTGAAGATTACGTAGATCATGACGTGGAGTTGGACGA
ACTCTTGGAGGAGGTGAAGCTGCCCTTCCCGTTCATATCCACGGGGGGTT
CCCACAAAGTGGTTACAGCACACGGCATCGATGACCATCACGATGCGGAG
GCTCACGATTATTTTGGCTCGTCCATGACGAATATGGGGAAGAATGCCAA
GACGGGCTTGACGACCATTGCGGTGGGTGCGCCCGGGGCCTTGGACACGA
GCGGAATTGTCTACTTTGTGGAAGTCAACGCTGAGGGCGAGGTGGAGGAT
TACACATACCTGACACATGAAGATTTCGAAGAGGCCGTGAACGAGGAAAT
GAGAGGAAGGAGGCAAGGAAAGAACGGGGGATGGGGACCTAACACGGCCT
TGGGATGGGCGCTGGAGAATGTTGGCGATTTAGACGGGGACGGGGTCAAT
GACCTGGCCGTGGGCGCACTCGGCTACCCGGGGGGGAGCTCCAAGGGTGC
CGTGTTCATTTTCTTCTTGACAGAAGATCACGGAATTAAAAGCCACACAG
TGATCACGCAGGATATGGGTGGCTTTCCGCACACGTTGAATGAGCACTGG
CGCTTTGGGTCCTCTCTGACGCGGTTGGGGGACTTGGACGGGGATGGCGT
GACGGAGCTTGCGGTTGGTGCCATGGGCATGGGCAAGGAGCGTGGGGGGG
TCTTCATCCTCTTTCTCAATAAGGATGGAAGCGTAAAGAACACCCAACTC
ATCTCCTCGCTACACGGTTGGGACCACAAATTGAGCGTACAGGACCAGTT
TGGCTCGGCGGTACGTGGGATCGGAGACTTAGATGGGGATGGCATTCCCG
ATATGGTTGTATCGGGGGATGGGTTCCCTTCGGGTGAGGGGTTCGGTGCA
GTGTGGGTCCTTTTCCTGAACATTGACGGCTCGGTCAAATATTGGCGTCG
CCTGGACGAGATGGACATGGCTTTGGAAGCCGAAGCCTTATTTGGTGCCT
CTATTGCGAACATGGGTGACTTGAATGGGGATGGACTACCGGAACTGTTG
GTGGGCGCACCCGGCATGCATGAATTGAGCGGAGAAGCGTACATTATTTC
TTTGAACAAGGACGGCAAAATTCAGCACTTTAAGGCGCTGACGGAGGACG
ACCACGAGCTGGACGAGTTGGTGAATACGAACGACGAGTTTGGGTGGTCG
GTCGCCAGCCTCGGGGACTTGGATGGGGATGGAATTCCGGACTTGGCTGT
TGCCGCTGAAACTTCACCGAGCCACACCAATGTGCCGTCGATCCACATGA
TCTACCTGGCGCCACAGGATATGGGTGCGAAAGAGGCAGCGGCACAAGAC
CCCAGGCGTCGTTTGCGATAG

Coding sequence (CDS) from alignment at scaffold_29:292811..294481-

>mRNA_8948 ID=mRNA_8948|Name=jgi.p|Nanoce1779_2|568900|organism=Nannochloropsis oceanica|type=CDS|length=1671bp|location=Sequence derived from alignment at scaffold_29:292811..294481- (Nannochloropsis oceanica)
ATGACGGACCTCCCTGTTGGTTCGAAACGCTCCCTCCGCGGCTCCGTCAC
CAACAGCGTCATTACAAGCGAAGGTACGCGCATCCTGCAGACAGCCGTGG
ACCACCACCATTCTCGTGTTATCTTTGTGCCAGCCCGTGAACCATTTTCG
CGCAGGAACATTCATCATTTCGCGAAGCATGGAGAGGCGGTTGGGATGGG
GGGACACCGAAACGAGACAGACAACGTGCGTGCGATCCACGTGGATGACA
TGGAGGAATTCGTAGAGGAGCGGCGGGAATATGTGAGGCATCCGGATGAT
GTATTGATGCGGCGTGAAGATTACGTAGATCATGACGTGGAGTTGGACGA
ACTCTTGGAGGAGGTGAAGCTGCCCTTCCCGTTCATATCCACGGGGGGTT
CCCACAAAGTGGTTACAGCACACGGCATCGATGACCATCACGATGCGGAG
GCTCACGATTATTTTGGCTCGTCCATGACGAATATGGGGAAGAATGCCAA
GACGGGCTTGACGACCATTGCGGTGGGTGCGCCCGGGGCCTTGGACACGA
GCGGAATTGTCTACTTTGTGGAAGTCAACGCTGAGGGCGAGGTGGAGGAT
TACACATACCTGACACATGAAGATTTCGAAGAGGCCGTGAACGAGGAAAT
GAGAGGAAGGAGGCAAGGAAAGAACGGGGGATGGGGACCTAACACGGCCT
TGGGATGGGCGCTGGAGAATGTTGGCGATTTAGACGGGGACGGGGTCAAT
GACCTGGCCGTGGGCGCACTCGGCTACCCGGGGGGGAGCTCCAAGGGTGC
CGTGTTCATTTTCTTCTTGACAGAAGATCACGGAATTAAAAGCCACACAG
TGATCACGCAGGATATGGGTGGCTTTCCGCACACGTTGAATGAGCACTGG
CGCTTTGGGTCCTCTCTGACGCGGTTGGGGGACTTGGACGGGGATGGCGT
GACGGAGCTTGCGGTTGGTGCCATGGGCATGGGCAAGGAGCGTGGGGGGG
TCTTCATCCTCTTTCTCAATAAGGATGGAAGCGTAAAGAACACCCAACTC
ATCTCCTCGCTACACGGTTGGGACCACAAATTGAGCGTACAGGACCAGTT
TGGCTCGGCGGTACGTGGGATCGGAGACTTAGATGGGGATGGCATTCCCG
ATATGGTTGTATCGGGGGATGGGTTCCCTTCGGGTGAGGGGTTCGGTGCA
GTGTGGGTCCTTTTCCTGAACATTGACGGCTCGGTCAAATATTGGCGTCG
CCTGGACGAGATGGACATGGCTTTGGAAGCCGAAGCCTTATTTGGTGCCT
CTATTGCGAACATGGGTGACTTGAATGGGGATGGACTACCGGAACTGTTG
GTGGGCGCACCCGGCATGCATGAATTGAGCGGAGAAGCGTACATTATTTC
TTTGAACAAGGACGGCAAAATTCAGCACTTTAAGGCGCTGACGGAGGACG
ACCACGAGCTGGACGAGTTGGTGAATACGAACGACGAGTTTGGGTGGTCG
GTCGCCAGCCTCGGGGACTTGGATGGGGATGGAATTCCGGACTTGGCTGT
TGCCGCTGAAACTTCACCGAGCCACACCAATGTGCCGTCGATCCACATGA
TCTACCTGGCGCCACAGGATATGGGTGCGAAAGAGGCAGCGGCACAAGAC
CCCAGGCGTCGTTTGCGATAG

Synonyms

Publications