jgi.p|Nanoce1779_2|604592, mRNA_8947 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604592
Unique Name	mRNA_8947
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2543
Alignment location	scaffold_29:290417..292959 +

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Properties


Property Name	Value
TranscriptId	604678
Track	FilteredModels2
ProteinId	604592

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:290417..292959 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604592	gene_8947	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604592	mRNA_8947-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8947	CDS_8947	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:290417..292959+
coding sequence from alignment at scaffold_29:290417..292959+

mRNA sequence

>mRNA_8947 ID=mRNA_8947|Name=jgi.p|Nanoce1779_2|604592|organism=Nannochloropsis oceanica|type=mRNA|length=2543bp
GAGTCCACGAGGCTAGTGACGATGATTTTGTTCGAGTTGAGCTGACACTG
CACAATATGGTTGGGAAATGTGGCAAATAAGGTATGGTCTCGAAGTGCCA
CTGCATGCGAGGCCTGTGGCTTGGCGGCCTGCAGTGGTAGACGCACCAGG
CCCAGAACAAAGGGCGAAGCTCATGTGTCATCAACGTTTTTCGGTGGCAG
TGTGTCGGCGAAGGAGAACGCTTGGCTTTGCCTTTTGCTTGCTTTCCCTC
GGGTTGTGTTCTTTTTTCAGTCCTCCCCACACCACAAGCTAAATAATCTT
GCCATTCTCTCCATTCTCATACACCAATCACCCTGCGACACACAGGTACA
AGAGCCCTTCCCCTCCCTTTCACTTTCGGGCGGCCCAGCCAACTTCAACG
CGAATATCATCATGACTCTCATCGCCACCACCACCACCAGCCTCCTCCTC
TTCCTCCCCCTGATCGTCGTTATCGTCCCGGTGCACGCCTTTCTCCCCCT
TCCCGTACAGTCCGGCTGCAGGAGCAGGAGTAGAAGAAGCGGTCTGGCTG
CCGTCGCTTCTCCTTCCAACCCCCCCACCACAACAACCGCCACCACCACT
ACCGGCCGGCTCTCCGCAACCCTCCTCCGCGGTGCCTCCGCCTCAGACAA
CGTGGACGACCTCGAAGACAGACCTCCTCGCGTCCCGCCTCCTAAACCCG
AGCCTACCCCCATACAGTACAACTCGCCGCTCTTCCCGCCAAAGGTCTTG
GACTCTCTCTGGAACGAGCAACGCAAGCCTCTTCTCCGCTTGGGGATGAA
AGGTATTATGCCTAGCCACCTCAACTCCCTCCGTGAACTCCTCGACGCGC
ACAATGTAGTCCGCATCAAAGTCAATGGGCCCGTAAGCGACGGTCTGCAG
GCAATGGCGGAGCAAGCGTTACTAAAGGCAGGCACGCTTCCTAACGCCAG
CCAACCGATGGGTGTCTTGTTGCGTGTTAAGGGAAAAGAGTTTTTGGTCG
GCCGAACGGACAAAATGGAGGCCTTGCGGAAAAAAGATGCTCCTACCCGA
GGTGTCGTTGCCAGGAGGAGGAAATGGTGGGCAAGAGTAGAGAGATGGGT
TGAGCTTGGATGGGTGACGAAACGGGCTGTGAACTCACAGGAAAATAAAG
TGCACATATCCTTTTTTGGCTTTTTCCTTTGTAGTTTCGACCGAGTGCAA
GAAGCTCTTAACTACTCTTTCACTTTTTGTCTCATCTCTCGGTGGTCGAA
AATCTGCCTTGAGACTGATCTTTCCCCTCTGTGCTCTGCTTTTCTTCTTT
TTTTTTTAATTCCTCTCGTCCTCTCGCTGTTGCTCACTCCTTCCACGATC
CCCTCTCTCCACATGCAGTTGCACGCCTTTGTTTGGCTTCTGCGTTTCCG
CTCGTCCTCCCACCTCCTATCCCAACCTCGTTCCACTTGGCATGTCGCGC
TCCGTCACCTTAACGCCCCCTTCCTCCACCTAGTGTAGCTAGCCCTAAAG
CTGTGTGCCAGAACTCAGCAAATGACCAACATTTACTCTCTGAGGGTGAT
GAGTCAAATTGGAATCGGTTGATCACGGCGATAAAAGTCATGGGGGGGAG
GAAACGAGGGAATATCGTGTGTGATTGAGCTCATTGACTTGAACCTGAGC
GTCCCATGCCTGGTCTTGCTGCTGTCGGTACATCGGCTGCCCCATCGACC
CACACTGCACTAGATCACAAACTACTGTGCATATATTCAGCGATGATACA
TGCATCCGGAGCGAACAGTGGTGGGATAGCGCAGTTCGGTACAAAGACGT
TTACGCCGCTGTGGACGGCGGGACTAAAGGGGAGGGGGCAAGTTGTAGTG
GTGAGTGATACGGGATTGGATGTAAACAATTGTTGGCTCCGCCAAACTCC
CGGGAAACGAGGAGGAGGAGTGAGTGACCCATCTGTCTTTTCCTATTCGA
ATATCGGATCTTTCGATAACAAACAGAGAAAGGTCGTGCAGTACTTGTTA
GGTATGGATAAGACGGATGGAAGCGGGCATGGTACGCATGTATGTGGGAC
GATTGCTGGTTAAAATGCAGAATAAAAGGAAATTGGCGAGGCTCGAAACG
ATATTTTCCCATTCTCTTTTCGTTTGCTTGTCACACACACATGTTGGCGA
ACTACAACGGCTCGTGTCAAATTCTATTTTATCACACGCACATCAAATCG
CGCTTCACGTTGTTATGATGACTGTCTTGTGCCTCTTTTCACTCTCTATT
CCTCGACTGATCACGGCGCGCTACCAGCACCGACAGGTGATTTCTGCTTC
CCTCACTCCCCATCTCGATTTTATTCGTTTGCTCTCCCCTGTTTTGAAAC
AGAAAAATGCTTCCGTCTTATCATGATCCCCTATCAAGATCCCCCTATCG
CAAACGACGCCTGGGGTCTTGTGCCGCTGCCTCTTTCGCACCCATATCCT
GTGGCGCCAGGTAGATCATGTGGATCGACGGCACATTGGTGTGGCTCGGT
GAAGTTTCAGCGGCAACAGCCAAGTCCGGAATTCCATCCCCAT

protein sequence of jgi.p|Nanoce1779_2|604592

>mRNA_8947-protein ID=mRNA_8947-protein|Name=jgi.p|Nanoce1779_2|604592|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MPGLAAVGTSAAPSTHTALDHKLLCIYSAMIHASGANSGGIAQFGTKTFT
PLWTAGLKGRGQVVVVSDTGLDVNNCWLRQTPGKRGGGVSDPSVFSYSNI
GSFDNKQRKVVQYLLGMDKTDGSGHGTHVCGTIAG*

mRNA from alignment at scaffold_29:290417..292959+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8947 ID=mRNA_8947|Name=jgi.p|Nanoce1779_2|604592|organism=Nannochloropsis oceanica|type=mRNA|length=2543bp|location=Sequence derived from alignment at scaffold_29:290417..292959+ (Nannochloropsis oceanica)
GAGTCCACGAGGCTAGTGACGATGATTTTGTTCGAGTTGAGCTGACACTG
CACAATATGGTTGGGAAATGTGGCAAATAAGGTATGGTCTCGAAGTGCCA
CTGCATGCGAGGCCTGTGGCTTGGCGGCCTGCAGTGGTAGACGCACCAGG
CCCAGAACAAAGGGCGAAGCTCATGTGTCATCAACGTTTTTCGGTGGCAG
TGTGTCGGCGAAGGAGAACGCTTGGCTTTGCCTTTTGCTTGCTTTCCCTC
GGGTTGTGTTCTTTTTTCAGTCCTCCCCACACCACAAGCTAAATAATCTT
GCCATTCTCTCCATTCTCATACACCAATCACCCTGCGACACACAGGTACA
AGAGCCCTTCCCCTCCCTTTCACTTTCGGGCGGCCCAGCCAACTTCAACG
CGAATATCATCATGACTCTCATCGCCACCACCACCACCAGCCTCCTCCTC
TTCCTCCCCCTGATCGTCGTTATCGTCCCGGTGCACGCCTTTCTCCCCCT
TCCCGTACAGTCCGGCTGCAGGAGCAGGAGTAGAAGAAGCGGTCTGGCTG
CCGTCGCTTCTCCTTCCAACCCCCCCACCACAACAACCGCCACCACCACT
ACCGGCCGGCTCTCCGCAACCCTCCTCCGCGGTGCCTCCGCCTCAGACAA
CGTGGACGACCTCGAAGACAGACCTCCTCGCGTCCCGCCTCCTAAACCCG
AGCCTACCCCCATACAGTACAACTCGCCGCTCTTCCCGCCAAAGGTCTTG
GACTCTCTCTGGAACGAGCAACGCAAGCCTCTTCTCCGCTTGGGGATGAA
AGGTATTATGCCTAGCCACCTCAACTCCCTCCGTGAACTCCTCGACGCGC
ACAATGTAGTCCGCATCAAAGTCAATGGGCCCGTAAGCGACGGTCTGCAG
GCAATGGCGGAGCAAGCGTTACTAAAGGCAGGCACGCTTCCTAACGCCAG
CCAACCGATGGGTGTCTTGTTGCGTGTTAAGGGAAAAGAGTTTTTGGTCG
GCCGAACGGACAAAATGGAGGCCTTGCGGAAAAAAGATGCTCCTACCCGA
GGTGTCGTTGCCAGGAGGAGGAAATGGTGGGCAAGAGTAGAGAGATGGGT
TGAGCTTGGATGGGTGACGAAACGGGCTGTGAACTCACAGGAAAATAAAG
TGCACATATCCTTTTTTGGCTTTTTCCTTTGTAGTTTCGACCGAGTGCAA
GAAGCTCTTAACTACTCTTTCACTTTTTGTCTCATCTCTCGGTGGTCGAA
AATCTGCCTTGAGACTGATCTTTCCCCTCTGTGCTCTGCTTTTCTTCTTT
TTTTTTTAATTCCTCTCGTCCTCTCGCTGTTGCTCACTCCTTCCACGATC
CCCTCTCTCCACATGCAGTTGCACGCCTTTGTTTGGCTTCTGCGTTTCCG
CTCGTCCTCCCACCTCCTATCCCAACCTCGTTCCACTTGGCATGTCGCGC
TCCGTCACCTTAACGCCCCCTTCCTCCACCTAGTGTAGCTAGCCCTAAAG
CTGTGTGCCAGAACTCAGCAAATGACCAACATTTACTCTCTGAGGGTGAT
GAGTCAAATTGGAATCGGTTGATCACGGCGATAAAAGTCATGGGGGGGAG
GAAACGAGGGAATATCGTGTGTGATTGAGCTCATTGACTTGAACCTGAGC
GTCCCATGCCTGGTCTTGCTGCTGTCGGTACATCGGCTGCCCCATCGACC
CACACTGCACTAGATCACAAACTACTGTGCATATATTCAGCGATGATACA
TGCATCCGGAGCGAACAGTGGTGGGATAGCGCAGTTCGGTACAAAGACGT
TTACGCCGCTGTGGACGGCGGGACTAAAGGGGAGGGGGCAAGTTGTAGTG
GTGAGTGATACGGGATTGGATGTAAACAATTGTTGGCTCCGCCAAACTCC
CGGGAAACGAGGAGGAGGAGTGAGTGACCCATCTGTCTTTTCCTATTCGA
ATATCGGATCTTTCGATAACAAACAGAGAAAGGTCGTGCAGTACTTGTTA
GGTATGGATAAGACGGATGGAAGCGGGCATGGTACGCATGTATGTGGGAC
GATTGCTGGTTAAAATGCAGAATAAAAGGAAATTGGCGAGGCTCGAAACG
ATATTTTCCCATTCTCTTTTCGTTTGCTTGTCACACACACATGTTGGCGA
ACTACAACGGCTCGTGTCAAATTCTATTTTATCACACGCACATCAAATCG
CGCTTCACGTTGTTATGATGACTGTCTTGTGCCTCTTTTCACTCTCTATT
CCTCGACTGATCACGGCGCGCTACCAGCACCGACAGGTGATTTCTGCTTC
CCTCACTCCCCATCTCGATTTTATTCGTTTGCTCTCCCCTGTTTTGAAAC
AGAAAAATGCTTCCGTCTTATCATGATCCCCTATCAAGATCCCCCTATCG
CAAACGACGCCTGGGGTCTTGTGCCGCTGCCTCTTTCGCACCCATATCCT
GTGGCGCCAGGTAGATCATGTGGATCGACGGCACATTGGTGTGGCTCGGT
GAAGTTTCAGCGGCAACAGCCAAGTCCGGAATTCCATCCCCAT

Coding sequence (CDS) from alignment at scaffold_29:290417..292959+

>mRNA_8947 ID=mRNA_8947|Name=jgi.p|Nanoce1779_2|604592|organism=Nannochloropsis oceanica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_29:290417..292959+ (Nannochloropsis oceanica)
ATGCCTGGTCTTGCTGCTGTCGGTACATCGGCTGCCCCATCGACCCACAC
TGCACTAGATCACAAACTACTGTGCATATATTCAGCGATGATACATGCAT
CCGGAGCGAACAGTGGTGGGATAGCGCAGTTCGGTACAAAGACGTTTACG
CCGCTGTGGACGGCGGGACTAAAGGGGAGGGGGCAAGTTGTAGTGGTGAG
TGATACGGGATTGGATGTAAACAATTGTTGGCTCCGCCAAACTCCCGGGA
AACGAGGAGGAGGAGTGAGTGACCCATCTGTCTTTTCCTATTCGAATATC
GGATCTTTCGATAACAAACAGAGAAAGGTCGTGCAGTACTTGTTAGGTAT
GGATAAGACGGATGGAAGCGGGCATGGTACGCATGTATGTGGGACGATTG
CTGGTTAA

Synonyms

Publications