jgi.p|Nanoce1779_2|226199, mRNA_8946 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|226199
Unique NamemRNA_8946
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1344
Alignment locationscaffold_29:289945..291988 +

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Properties
Property NameValue
TranscriptId226285
TrackFilteredModels2
ProteinId226199
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:289945..291988 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|226199gene_8946Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|226199mRNA_8946-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8946CDS_8946Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8946 ID=mRNA_8946|Name=jgi.p|Nanoce1779_2|226199|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp
ATTTCTCAAATCTTTCCCATCACGTTTCCTACTTTATTTCCTCCTCCTTC
CTACCTCTCCCTGGGTGCTCTCTGGCACTCGCCCCAACAGCTCTTGTGTG
GCGGGATTTCGCAGGGGGATCCACTTCCGAGTTTTGGAGGGCACAGACAC
GCCGTTGATAAAATTGGGAATGGCCGGCTGAGGAGGCGGAAAAGAATGAG
GGATAGAAGAAGCCTCCTCCTCTTCCTCCCCCTGATCGTCGTTATCGTCC
CGGTGCACGCCTTTCTCCCCCTTCCCGTACAGTCCGGCTGCAGGAGCAGG
AGTAGAAGAAGCGGTCTGGCTGCCGTCGCTTCTCCTTCCAACCCCCCCAC
CACAACAACCGCCACCACCACTACCGGCCGGCTCTCCGCAACCCTCCTCC
GCGGTGCCTCCGCCTCAGACAACGTGGACGACCTCGAAGACAGACCTCCT
CGCGTCCCGCCTCCTAAACCCGAGCCTACCCCCATACAGTACAACTCGCC
GCTCTTCCCGCCAAAGGTCTTGGACTCTCTCTGGAACGAGCAACGCAAGC
CTCTTCTCCGCTTGGGGATGAAAGGTATTATGCCTAGCCACCTCAACTCC
CTCCGTGAACTCCTCGACGCGCACAATGTAGTCCGCATCAAAGTCAATGG
GCCCGTAAGCGACGGTCTGCAGGCAATGGCGGAGCAAGCGTTACTAAAGG
CAGGCACGCTTCCTAACGCCAGCCAACCGATGGGTGTCTTGTTGCGTGTT
AAGGGAAAAGAGTTTTTGGTCGGCCGAACGGACAAAATGGAGGCCTTGCG
GAAAAAAGATGCTCCTACCCGAGGTGTCGTTGCCAGGAGGAGGAAATGGT
GGGCAAGAGTAGAGAGATGGGTTGAGCTTGGATGGGTGACGAAACGGGCT
GTGAACTCACAGGAAAATAAAGTGCACATATCCTTTTTTGGCTTTTTCCT
TTGTAGTTTCGACCGAGTGCAAGAAGCTCTTAACTACTCTTTCACTTTTT
GTCTCATCTCTCGGTGGTCGAAAATCTGCCTTGAGACTGATCTTTCCCCT
CTGTGCTCTGCTTTTCTTCTTTTTTTTTTAATTCCTCTCGTCCTCTCGCT
GTTGCTCACTCCTTCCACGATCCCCTCTCTCCACATGCAGTTGCACGCCT
TTGTTTGGCTTCTGCGTTTCCGCTCGTCCTCCCACCTCCTATCCCAACCT
CGTTCCACTTGGCATGTCGCGCTCCGTCACCTTAACGCCCCCTTCCTCCA
CCTAGTGTAGCTAGCCCTAAAGCTGTGTGCCAGAACTCAGCAAATGACCA
ACATTTACTCTCTGAGGGTGATGAGTCAAATTGGAATCGGTTGA
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protein sequence of jgi.p|Nanoce1779_2|226199

>mRNA_8946-protein ID=mRNA_8946-protein|Name=jgi.p|Nanoce1779_2|226199|organism=Nannochloropsis oceanica|type=polypeptide|length=355bp
MRDRRSLLLFLPLIVVIVPVHAFLPLPVQSGCRSRSRRSGLAAVASPSNP
PTTTTATTTTGRLSATLLRGASASDNVDDLEDRPPRVPPPKPEPTPIQYN
SPLFPPKVLDSLWNEQRKPLLRLGMKGIMPSHLNSLRELLDAHNVVRIKV
NGPVSDGLQAMAEQALLKAGTLPNASQPMGVLLRVKGKEFLVGRTDKMEA
LRKKDAPTRGVVARRRKWWARVERWVELGWVTKRAVNSQENKVHISFFGF
FLCSFDRVQEALNYSFTFCLISRWSKICLETDLSPLCSAFLLFFLIPLVL
SLLLTPSTIPSLHMQLHAFVWLLRFRSSSHLLSQPRSTWHVALRHLNAPF
LHLV*
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mRNA from alignment at scaffold_29:289945..291988+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8946 ID=mRNA_8946|Name=jgi.p|Nanoce1779_2|226199|organism=Nannochloropsis oceanica|type=mRNA|length=2044bp|location=Sequence derived from alignment at scaffold_29:289945..291988+ (Nannochloropsis oceanica)
ATTTCTCAAATCTTTCCCATCACGTTTCCTACTTTATTTCCTCCTCCTTC
CTACCTCTCCCTGGGTGCTCTCTGGCACTCGCCCCAACAGCTCTTGTGTG
GCGGGATTTCGCAGGGGGATCCACTTCCGAGTTTTGGAGGGCACAGACAC
GCCGTTGATAAAATTGGGAATGGCCGGCTGAGGAGGCGGAAAAGAATGAG
GGATAGAAGAAGGTGAGCGCAGGGAAGAGGAAGGGGTTCAAGTCAAATTG
AAGGGTCGAGGGAGCAAGAAGGGACGTACCGCCGCGTGGAGCGAGCTGTC
CTCCCTGCTGTTGTGTTTGTTGTCATGGGTGATGCGCTGAGCGGCGACGT
CGCCGGCGGCTGCAACAGCAAAGCCACGGCGAGAAGGAGTGGTTGTGGTG
GTGCGGAGGATGAGGAGCGAGGAGGAGGACGAGGAGGAGGAGGTGAAGAC
GAAGCGTCGAAGCATCAGAATGGAGTCCACGAGGCTAGTGACGATGATTT
TGTTCGAGTTGAGCTGACACTGCACAATATGGTTGGGAAATGTGGCAAAT
AAGGTATGGTCTCGAAGTGCCACTGCATGCGAGGCCTGTGGCTTGGCGGC
CTGCAGTGGTAGACGCACCAGGCCCAGAACAAAGGGCGAAGCTCATGTGT
CATCAACGTTTTTCGGTGGCAGTGTGTCGGCGAAGGAGAACGCTTGGCTT
TGCCTTTTGCTTGCTTTCCCTCGGGTTGTGTTCTTTTTTCAGTCCTCCCC
ACACCACAAGCTAAATAATCTTGCCATTCTCTCCATTCTCATACACCAAT
CACCCTGCGACACACAGGTACAAGAGCCCTTCCCCTCCCTTTCACTTTCG
GGCGGCCCAGCCAACTTCAACGCGAATATCATCATGACTCTCATCGCCAC
CACCACCACCAGCCTCCTCCTCTTCCTCCCCCTGATCGTCGTTATCGTCC
CGGTGCACGCCTTTCTCCCCCTTCCCGTACAGTCCGGCTGCAGGAGCAGG
AGTAGAAGAAGCGGTCTGGCTGCCGTCGCTTCTCCTTCCAACCCCCCCAC
CACAACAACCGCCACCACCACTACCGGCCGGCTCTCCGCAACCCTCCTCC
GCGGTGCCTCCGCCTCAGACAACGTGGACGACCTCGAAGACAGACCTCCT
CGCGTCCCGCCTCCTAAACCCGAGCCTACCCCCATACAGTACAACTCGCC
GCTCTTCCCGCCAAAGGTCTTGGACTCTCTCTGGAACGAGCAACGCAAGC
CTCTTCTCCGCTTGGGGATGAAAGGTATTATGCCTAGCCACCTCAACTCC
CTCCGTGAACTCCTCGACGCGCACAATGTAGTCCGCATCAAAGTCAATGG
GCCCGTAAGCGACGGTCTGCAGGCAATGGCGGAGCAAGCGTTACTAAAGG
CAGGCACGCTTCCTAACGCCAGCCAACCGATGGGTGTCTTGTTGCGTGTT
AAGGGAAAAGAGTTTTTGGTCGGCCGAACGGACAAAATGGAGGCCTTGCG
GAAAAAAGATGCTCCTACCCGAGGTGTCGTTGCCAGGAGGAGGAAATGGT
GGGCAAGAGTAGAGAGATGGGTTGAGCTTGGATGGGTGACGAAACGGGCT
GTGAACTCACAGGAAAATAAAGTGCACATATCCTTTTTTGGCTTTTTCCT
TTGTAGTTTCGACCGAGTGCAAGAAGCTCTTAACTACTCTTTCACTTTTT
GTCTCATCTCTCGGTGGTCGAAAATCTGCCTTGAGACTGATCTTTCCCCT
CTGTGCTCTGCTTTTCTTCTTTTTTTTTTAATTCCTCTCGTCCTCTCGCT
GTTGCTCACTCCTTCCACGATCCCCTCTCTCCACATGCAGTTGCACGCCT
TTGTTTGGCTTCTGCGTTTCCGCTCGTCCTCCCACCTCCTATCCCAACCT
CGTTCCACTTGGCATGTCGCGCTCCGTCACCTTAACGCCCCCTTCCTCCA
CCTAGTGTAGCTAGCCCTAAAGCTGTGTGCCAGAACTCAGCAAATGACCA
ACATTTACTCTCTGAGGGTGATGAGTCAAATTGGAATCGGTTGA
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Coding sequence (CDS) from alignment at scaffold_29:289945..291988+

>mRNA_8946 ID=mRNA_8946|Name=jgi.p|Nanoce1779_2|226199|organism=Nannochloropsis oceanica|type=CDS|length=2130bp|location=Sequence derived from alignment at scaffold_29:289945..291988+ (Nannochloropsis oceanica)
ATGAGGGATAGAAGAAGCCTCCTCCTCTTCCTCCCCCTGATCGTCGTTAT
CGTCCCGGTGCACGCCTTTCTCCCCCTTCCCGTACAGTCCGGCTGCAGGA
GCAGGAGTAGAAGAAGCGGTCTGGCTGCCGTCGCTTCTCCTTCCAACCCC
CCCACCACAACAACCGCCACCACCACTACCGGCCGGCTCTCCGCAACCCT
CCTCCGCGGTGCCTCCGCCTCAGACAACGTGGACGACCTCGAAGACAGAC
CTCCTCGCGTCCCGCCTCCTAAACCCGAGCCTACCCCCATACAGTACAAC
TCGCCGCTCTTCCCGCCAAAGGTCTTGGACTCTCTCTGGAACGAGCAACG
CAAGCCTCTTCTCCGCTTGGGGATGAAAGGTATTATGCCTAGCCACCTCA
ACTCCCTCCGTGAACTCCTCGACGCGCACAATGTAGTCCGCATCAAAGTC
AATGGGCCCGTAAGCGACGGTCTGCAGGCAATGGCGGAGCAAGCGTTACT
AAAGGCAGGCACGCTTCCTAACGCCAGCCAACCGATGGGTGTCTTGTTGC
GTGTTAAGGGAAAAGAGTTTTTGGTCGGCCGAACGGACAAAATGGAGGCC
TTGCGGAAAAAAGATGCTCCTACCCGAGGTGTCGTTGCCAGGAGGAGGAA
ATGGTGGGCAAGAGTAGAGAGATGGGTTGAGCTTGGATGGGTGACGAAAC
GGGCTGTGAACTCACAGGAAAATAAAGTGCACATATCCTTTTTTGGCTTT
TTCCTTTGTAGTTTCGACCGAGTGCAAGAAGCTCTTAACTACTCTTTCAC
TTTTTGTCTCATCTCTCGGTGGTCGAAAATCTGCCTTGAGACTGATCTTT
CCCCTCTGTGCTCTGCTTTTCTTCTTTTTTTTTTAATTCCTCTCGTCCTC
TCGCTGTTGCTCACTCCTTCCACGATCCCCTCTCTCCACATGCAGTTGCA
CGCCTTTGTTTGGCTTCTGCGTTTCCGCTCGTCCTCCCACCTCCTATCCC
AACCTCGTTCCACTTGGCATGTCGCGCTCCGTCACCTTAACGCCCCCTTC
CTCCACCTAGTGTAGATGAGGGATAGAAGAAGCCTCCTCCTCTTCCTCCC
CCTGATCGTCGTTATCGTCCCGGTGCACGCCTTTCTCCCCCTTCCCGTAC
AGTCCGGCTGCAGGAGCAGGAGTAGAAGAAGCGGTCTGGCTGCCGTCGCT
TCTCCTTCCAACCCCCCCACCACAACAACCGCCACCACCACTACCGGCCG
GCTCTCCGCAACCCTCCTCCGCGGTGCCTCCGCCTCAGACAACGTGGACG
ACCTCGAAGACAGACCTCCTCGCGTCCCGCCTCCTAAACCCGAGCCTACC
CCCATACAGTACAACTCGCCGCTCTTCCCGCCAAAGGTCTTGGACTCTCT
CTGGAACGAGCAACGCAAGCCTCTTCTCCGCTTGGGGATGAAAGGTATTA
TGCCTAGCCACCTCAACTCCCTCCGTGAACTCCTCGACGCGCACAATGTA
GTCCGCATCAAAGTCAATGGGCCCGTAAGCGACGGTCTGCAGGCAATGGC
GGAGCAAGCGTTACTAAAGGCAGGCACGCTTCCTAACGCCAGCCAACCGA
TGGGTGTCTTGTTGCGTGTTAAGGGAAAAGAGTTTTTGGTCGGCCGAACG
GACAAAATGGAGGCCTTGCGGAAAAAAGATGCTCCTACCCGAGGTGTCGT
TGCCAGGAGGAGGAAATGGTGGGCAAGAGTAGAGAGATGGGTTGAGCTTG
GATGGGTGACGAAACGGGCTGTGAACTCACAGGAAAATAAAGTGCACATA
TCCTTTTTTGGCTTTTTCCTTTGTAGTTTCGACCGAGTGCAAGAAGCTCT
TAACTACTCTTTCACTTTTTGTCTCATCTCTCGGTGGTCGAAAATCTGCC
TTGAGACTGATCTTTCCCCTCTGTGCTCTGCTTTTCTTCTTTTTTTTTTA
ATTCCTCTCGTCCTCTCGCTGTTGCTCACTCCTTCCACGATCCCCTCTCT
CCACATGCAGTTGCACGCCTTTGTTTGGCTTCTGCGTTTCCGCTCGTCCT
CCCACCTCCTATCCCAACCTCGTTCCACTTGGCATGTCGCGCTCCGTCAC
CTTAACGCCCCCTTCCTCCACCTAGTGTAG
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Synonyms
Publications