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Properties
| Property Name | Value |
|---|
| TranscriptId | 226328 |
| Track | FilteredModels2 |
| ProteinId | 226242 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_29 | supercontig | scaffold_29:280383..283040 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_8944 ID=mRNA_8944|Name=jgi.p|Nanoce1779_2|226242|organism=Nannochloropsis oceanica|type=mRNA|length=2381bp
CGAAAGGCACGACGACGACGACGAAAACCGCGAGCAAGCAGGCGTAGGCG
CAGTTGAGTGGACGAAGGCACGACGACAAACGCACCTCGGGAGGGGCTTA
CATGGAGGCTTGAACCTATCAACAATCGAAATTTAACTCAGAAAGGAAGA
CCGATCATCTTGGGGTAAAAAACAGTCATGGATCCCTCCATTGTGCACCA
CCACGACGACGCTGCTGCTGCCTTCCTCCTCAGCAGCGCAACTAAATCCA
CCACTACCTCGTCCTCGTCCTCAGTTCTAAATACTGCTGCTCCAGCCAGC
ATGGCAAGCAAGGCCCTTTATGTTGCTACTACTGGTGCAGCAGCAGGTCC
GCTAATGCCGGACGCAGGCGCTCTCTTTGCTTCTCCCTCCTTCTCCATGG
GCAGCCTCTTTGGTCCCTCCTCAGTCTCGCAGGGAGGGAGGGAAGGAGGA
CGGGAGGGAGGAAGTGTGTCATCACGGGGAATAGAATTCTTGTTTGAGAG
TGAGGGAAGGGAGGGAGGGAGAAAGGGGGGAGGAGCGCCTTTTTCCGTGT
CGAAATTAACGGATATGATGAGTCCCCTTCTTCCTTCTTCTGCAGCTTCT
GCCAAGAGCAGCAGCAGTGGTGGTGATGGTGGGCTCCTCACTCGCTACTC
CCAACATCAGATACACCCACAACAGCAGCCGCCGTCGCTGCAGCTGCAGC
AGCATCAGCAACAAGGCGAAAGGATGTGGGATCTGATGGCAGGCGAAGAG
GGAGAGGAGGACGAGATGGAGGAAGAGGAAGAGGACGAGGTCAGGGTGGT
GGTAGACGCCGCGAGTATGTTACCGGTATTGGGGAAGAAGAAGAGAAGGA
CGAGGAAGGAGGGGAGGGCGAGCAGAAGGTCGATTACGATGGCCTCGGCG
AAGTCGGGAATGGTGGTGTACGAGGACGAGGAAGGGAGGGAGGAAGAGGA
GGGGGAAGGGAACATGGTGTCTGGCTTCAGGCTTGCCGAGGAGGAAGAGG
AAGAGATGGAGGGAGGGAGGGATGAAGTGGCCGAGGAAATGATGCTTGAG
AATAAGGAGAACAACAACAGGAACACCAGCCTCCCTGTATCTGCCTTGCT
GCCCCAGCATGATGGAGGGGGAAGGAAGGCCAAGAAGGGCAACAGCAGCA
GCAGCCGCCTCAAGAAGCCCTCTGCTGCTGGTGTTGCCCGTCGCATCCCC
TCCTTGGCCGATGCCGGGGTCTCCCCGGACTACCCTGTCGCGGTCATGAC
CAAGAAGAGCAGCAGCAGTAGCAGCAACGACGACAGCAGCAGCAGCAGCA
GCAGCAACCGCAGAGCTACCTCCATAATCGCCGCCACGGCCGCCGCCGCC
CGCCGCAGTAGCACCGGGGCCATGCTTAACGCTCCTTCCTCCCTCGCCTC
CTCCTCTATAGCCAAGAAGAGCATCCCCTCCCACATGAACCACAACCACA
AGAAGCGCGTCGACTGGTCCAAAGGTGAGCCGGCTCAGCGGATGCACCAA
GCTATCACGGACTGCACAGAGATCACCCAACGGGGCGAAAGTAGCAGTGG
ATGCAAGAGCTGGAGGGGCGTGGCACGGATGTACGGCATCAGTTGGGCGG
TGCTCTACCCTAGGCTATCGGGGAAAATCGCCGTCAACGCCCCCCTCGGT
GGGCGGGTCGTTGGAGGGGGAGGAGGGAAGGAGGGGGGGAGGGAGGGGCT
GAGCCATGACGTGGAAGTGAAGCTCTTTCAGCACTGCTGCACCATGGCCA
AGAGGGGGCAAGGATTGGGAGGGTGGAGAGACCTCAAGCAACTCGCCGGC
AAATGGGGGGAAAAGGCTGCTGCGGCTGCCAAAAGCGGCAACGGCAGCAG
CAGCAAAGCGGGCCTGCCTTCCCTCCCGACCTCCTCATCGGCGGTGGCGG
TGGACGCATGGGCCCAGAAATTCCGGGTTCGTTTTCCTAGCTTGAAGACT
TTCTACTGTCCGCCTGAAGGAGGAGAAAGAGAAGGAGGGAGGGAGGGGGA
GGGGTACTACGTGTTGTGTACGCGGGATGAGGCAGGAAAGGATGCCAGGG
AGGTGACGGAGGAGGAAGAAGAGGAGGAGGAAGGGAGAGAGGACAAGAGG
AAGGACCGGGAATTGTGTTCAGTCGTAGATGAGGGATGGAGGGAGGGCAA
GGAGTGTAGCAGGACGACGGCGGGCTTCGGCGCCAGCAAGAGTGACGGGA
GGGACAGGAGAAAGAGGGGAGGGAACACGACGTGTTAGCTCTCGCCAACG
GGTGATTAGCCTCAAGGGCCAGCTGCTGGCAGATGCCGAGGAGGAGGAGG
AAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GAAGGAAAGAGCGAAGGGATGCAAGTACCGA back to topprotein sequence of jgi.p|Nanoce1779_2|226242 >mRNA_8944-protein ID=mRNA_8944-protein|Name=jgi.p|Nanoce1779_2|226242|organism=Nannochloropsis oceanica|type=polypeptide|length=687bp
MDPSIVHHHDDAAAAFLLSSATKSTTTSSSSSVLNTAAPASMASKALYVA
TTGAAAGPLMPDAGALFASPSFSMGSLFGPSSVSQGGREGGREGGSVSSR
GIEFLFESEGREGGRKGGGAPFSVSKLTDMMSPLLPSSAASAKSSSSGGD
GGLLTRYSQHQIHPQQQPPSLQLQQHQQQGERMWDLMAGEEGEEDEMEEE
EEDEVRVVVDAASMLPVLGKKKRRTRKEGRASRRSITMASAKSGMVVYED
EEGREEEEGEGNMVSGFRLAEEEEEEMEGGRDEVAEEMMLENKENNNRNT
SLPVSALLPQHDGGGRKAKKGNSSSSRLKKPSAAGVARRIPSLADAGVSP
DYPVAVMTKKSSSSSSNDDSSSSSSSNRRATSIIAATAAAARRSSTGAML
NAPSSLASSSIAKKSIPSHMNHNHKKRVDWSKGEPAQRMHQAITDCTEIT
QRGESSSGCKSWRGVARMYGISWAVLYPRLSGKIAVNAPLGGRVVGGGGG
KEGGREGLSHDVEVKLFQHCCTMAKRGQGLGGWRDLKQLAGKWGEKAAAA
AKSGNGSSSKAGLPSLPTSSSAVAVDAWAQKFRVRFPSLKTFYCPPEGGE
REGGREGEGYYVLCTRDEAGKDAREVTEEEEEEEEGREDKRKDRELCSVV
DEGWREGKECSRTTAGFGASKSDGRDRRKRGGNTTC* back to topmRNA from alignment at scaffold_29:280383..283040+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_8944 ID=mRNA_8944|Name=jgi.p|Nanoce1779_2|226242|organism=Nannochloropsis oceanica|type=mRNA|length=2658bp|location=Sequence derived from alignment at scaffold_29:280383..283040+ (Nannochloropsis oceanica)
CGAAAGGCACGACGACGACGACGAAAACCGCGAGCAAGCAGGCGTAGGCG
CAGTTGAGTGGACGAAGGCACGACGACAAACGCACCTCGGGAGGGGCTTA
CATGGTAAGTGAGCGACGACGGGTTACCTACCGGGAGGATGGCTGGCAGA
GCGGGGAAATATCAAATAGCGTGTCGGCATTCGCTCTCCTCCAAGCATGT
CCCTAGACTGAATGAGTCGTCCACTTGCTGTTCATGTGCTGATGATGTGG
CGTTTCTCCCTATGTCGCCCTTACGAATTTGCTGTCGACATGTCGCTAGC
ATCTTCGCCCACCCACACTCTCCCCTCCCACTTCCGCGACATACAGGAGG
CTTGAACCTATCAACAATCGAAATTTAACTCAGAAAGGAAGACCGATCAT
CTTGGGGTAAAAAACAGTCATGGATCCCTCCATTGTGCACCACCACGACG
ACGCTGCTGCTGCCTTCCTCCTCAGCAGCGCAACTAAATCCACCACTACC
TCGTCCTCGTCCTCAGTTCTAAATACTGCTGCTCCAGCCAGCATGGCAAG
CAAGGCCCTTTATGTTGCTACTACTGGTGCAGCAGCAGGTCCGCTAATGC
CGGACGCAGGCGCTCTCTTTGCTTCTCCCTCCTTCTCCATGGGCAGCCTC
TTTGGTCCCTCCTCAGTCTCGCAGGGAGGGAGGGAAGGAGGACGGGAGGG
AGGAAGTGTGTCATCACGGGGAATAGAATTCTTGTTTGAGAGTGAGGGAA
GGGAGGGAGGGAGAAAGGGGGGAGGAGCGCCTTTTTCCGTGTCGAAATTA
ACGGATATGATGAGTCCCCTTCTTCCTTCTTCTGCAGCTTCTGCCAAGAG
CAGCAGCAGTGGTGGTGATGGTGGGCTCCTCACTCGCTACTCCCAACATC
AGATACACCCACAACAGCAGCCGCCGTCGCTGCAGCTGCAGCAGCATCAG
CAACAAGGCGAAAGGATGTGGGATCTGATGGCAGGCGAAGAGGGAGAGGA
GGACGAGATGGAGGAAGAGGAAGAGGACGAGGTCAGGGTGGTGGTAGACG
CCGCGAGTATGTTACCGGTATTGGGGAAGAAGAAGAGAAGGACGAGGAAG
GAGGGGAGGGCGAGCAGAAGGTCGATTACGATGGCCTCGGCGAAGTCGGG
AATGGTGGTGTACGAGGACGAGGAAGGGAGGGAGGAAGAGGAGGGGGAAG
GGAACATGGTGTCTGGCTTCAGGCTTGCCGAGGAGGAAGAGGAAGAGATG
GAGGGAGGGAGGGATGAAGTGGCCGAGGAAATGATGCTTGAGAATAAGGA
GAACAACAACAGGAACACCAGCCTCCCTGTATCTGCCTTGCTGCCCCAGC
ATGATGGAGGGGGAAGGAAGGCCAAGAAGGGCAACAGCAGCAGCAGCCGC
CTCAAGAAGCCCTCTGCTGCTGGTGTTGCCCGTCGCATCCCCTCCTTGGC
CGATGCCGGGGTCTCCCCGGACTACCCTGTCGCGGTCATGACCAAGAAGA
GCAGCAGCAGTAGCAGCAACGACGACAGCAGCAGCAGCAGCAGCAGCAAC
CGCAGAGCTACCTCCATAATCGCCGCCACGGCCGCCGCCGCCCGCCGCAG
TAGCACCGGGGCCATGCTTAACGCTCCTTCCTCCCTCGCCTCCTCCTCTA
TAGCCAAGAAGAGCATCCCCTCCCACATGAACCACAACCACAAGAAGCGC
GTCGACTGGTCCAAAGGTGAGCCGGCTCAGCGGATGCACCAAGCTATCAC
GGACTGCACAGAGATCACCCAACGGGGCGAAAGTAGCAGTGGATGCAAGA
GCTGGAGGGGCGTGGCACGGATGTACGGCATCAGTTGGGCGGTGCTCTAC
CCTAGGCTATCGGGGAAAATCGCCGTCAACGCCCCCCTCGGTGGGCGGGT
CGTTGGAGGGGGAGGAGGGAAGGAGGGGGGGAGGGAGGGGCTGAGCCATG
ACGTGGAAGTGAAGCTCTTTCAGCACTGCTGCACCATGGCCAAGAGGGGG
CAAGGATTGGGAGGGTGGAGAGACCTCAAGCAACTCGCCGGCAAATGGGG
GGAAAAGGCTGCTGCGGCTGCCAAAAGCGGCAACGGCAGCAGCAGCAAAG
CGGGCCTGCCTTCCCTCCCGACCTCCTCATCGGCGGTGGCGGTGGACGCA
TGGGCCCAGAAATTCCGGGTTCGTTTTCCTAGCTTGAAGACTTTCTACTG
TCCGCCTGAAGGAGGAGAAAGAGAAGGAGGGAGGGAGGGGGAGGGGTACT
ACGTGTTGTGTACGCGGGATGAGGCAGGAAAGGATGCCAGGGAGGTGACG
GAGGAGGAAGAAGAGGAGGAGGAAGGGAGAGAGGACAAGAGGAAGGACCG
GGAATTGTGTTCAGTCGTAGATGAGGCTATGGGCTTGTCGCCGGGTAAGG
AGCGAAGGAGGGATGGAGGGAGGGCAAGGAGTGTAGCAGGACGACGGCGG
GCTTCGGCGCCAGCAAGAGTGACGGGAGGGACAGGAGAAAGAGGGGAGGG
AACACGACGTGTTAGCTCTCGCCAACGGGTGATTAGCCTCAAGGGCCAGC
TGCTGGCAGATGCCGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGGAAAGAGCGAAGGGATGCA
AGTACCGA back to topCoding sequence (CDS) from alignment at scaffold_29:280383..283040+ >mRNA_8944 ID=mRNA_8944|Name=jgi.p|Nanoce1779_2|226242|organism=Nannochloropsis oceanica|type=CDS|length=4122bp|location=Sequence derived from alignment at scaffold_29:280383..283040+ (Nannochloropsis oceanica)
ATGGATCCCTCCATTGTGCACCACCACGACGACGCTGCTGCTGCCTTCCT
CCTCAGCAGCGCAACTAAATCCACCACTACCTCGTCCTCGTCCTCAGTTC
TAAATACTGCTGCTCCAGCCAGCATGGCAAGCAAGGCCCTTTATGTTGCT
ACTACTGGTGCAGCAGCAGGTCCGCTAATGCCGGACGCAGGCGCTCTCTT
TGCTTCTCCCTCCTTCTCCATGGGCAGCCTCTTTGGTCCCTCCTCAGTCT
CGCAGGGAGGGAGGGAAGGAGGACGGGAGGGAGGAAGTGTGTCATCACGG
GGAATAGAATTCTTGTTTGAGAGTGAGGGAAGGGAGGGAGGGAGAAAGGG
GGGAGGAGCGCCTTTTTCCGTGTCGAAATTAACGGATATGATGAGTCCCC
TTCTTCCTTCTTCTGCAGCTTCTGCCAAGAGCAGCAGCAGTGGTGGTGAT
GGTGGGCTCCTCACTCGCTACTCCCAACATCAGATACACCCACAACAGCA
GCCGCCGTCGCTGCAGCTGCAGCAGCATCAGCAACAAGGCGAAAGGATGT
GGGATCTGATGGCAGGCGAAGAGGGAGAGGAGGACGAGATGGAGGAAGAG
GAAGAGGACGAGGTCAGGGTGGTGGTAGACGCCGCGAGTATGTTACCGGT
ATTGGGGAAGAAGAAGAGAAGGACGAGGAAGGAGGGGAGGGCGAGCAGAA
GGTCGATTACGATGGCCTCGGCGAAGTCGGGAATGGTGGTGTACGAGGAC
GAGGAAGGGAGGGAGGAAGAGGAGGGGGAAGGGAACATGGTGTCTGGCTT
CAGGCTTGCCGAGGAGGAAGAGGAAGAGATGGAGGGAGGGAGGGATGAAG
TGGCCGAGGAAATGATGCTTGAGAATAAGGAGAACAACAACAGGAACACC
AGCCTCCCTGTATCTGCCTTGCTGCCCCAGCATGATGGAGGGGGAAGGAA
GGCCAAGAAGGGCAACAGCAGCAGCAGCCGCCTCAAGAAGCCCTCTGCTG
CTGGTGTTGCCCGTCGCATCCCCTCCTTGGCCGATGCCGGGGTCTCCCCG
GACTACCCTGTCGCGGTCATGACCAAGAAGAGCAGCAGCAGTAGCAGCAA
CGACGACAGCAGCAGCAGCAGCAGCAGCAACCGCAGAGCTACCTCCATAA
TCGCCGCCACGGCCGCCGCCGCCCGCCGCAGTAGCACCGGGGCCATGCTT
AACGCTCCTTCCTCCCTCGCCTCCTCCTCTATAGCCAAGAAGAGCATCCC
CTCCCACATGAACCACAACCACAAGAAGCGCGTCGACTGGTCCAAAGGTG
AGCCGGCTCAGCGGATGCACCAAGCTATCACGGACTGCACAGAGATCACC
CAACGGGGCGAAAGTAGCAGTGGATGCAAGAGCTGGAGGGGCGTGGCACG
GATGTACGGCATCAGTTGGGCGGTGCTCTACCCTAGGCTATCGGGGAAAA
TCGCCGTCAACGCCCCCCTCGGTGGGCGGGTCGTTGGAGGGGGAGGAGGG
AAGGAGGGGGGGAGGGAGGGGCTGAGCCATGACGTGGAAGTGAAGCTCTT
TCAGCACTGCTGCACCATGGCCAAGAGGGGGCAAGGATTGGGAGGGTGGA
GAGACCTCAAGCAACTCGCCGGCAAATGGGGGGAAAAGGCTGCTGCGGCT
GCCAAAAGCGGCAACGGCAGCAGCAGCAAAGCGGGCCTGCCTTCCCTCCC
GACCTCCTCATCGGCGGTGGCGGTGGACGCATGGGCCCAGAAATTCCGGG
TTCGTTTTCCTAGCTTGAAGACTTTCTACTGTCCGCCTGAAGGAGGAGAA
AGAGAAGGAGGGAGGGAGGGGGAGGGGTACTACGTGTTGTGTACGCGGGA
TGAGGCAGGAAAGGATGCCAGGGAGGTGACGGAGGAGGAAGAAGAGGAGG
AGGAAGGGAGAGAGGACAAGAGGAAGGACCGGGAATTGTGTTCAGTCGTA
GATGAGGGATGGAGGGAGGGCAAGGAGTGTAGCAGGACGACGGCGGGCTT
CGGCGCCAGCAAGAGTGACGGGAGGGACAGGAGAAAGAGGGGAGGGAACA
CGACGTGTTAGATGGATCCCTCCATTGTGCACCACCACGACGACGCTGCT
GCTGCCTTCCTCCTCAGCAGCGCAACTAAATCCACCACTACCTCGTCCTC
GTCCTCAGTTCTAAATACTGCTGCTCCAGCCAGCATGGCAAGCAAGGCCC
TTTATGTTGCTACTACTGGTGCAGCAGCAGGTCCGCTAATGCCGGACGCA
GGCGCTCTCTTTGCTTCTCCCTCCTTCTCCATGGGCAGCCTCTTTGGTCC
CTCCTCAGTCTCGCAGGGAGGGAGGGAAGGAGGACGGGAGGGAGGAAGTG
TGTCATCACGGGGAATAGAATTCTTGTTTGAGAGTGAGGGAAGGGAGGGA
GGGAGAAAGGGGGGAGGAGCGCCTTTTTCCGTGTCGAAATTAACGGATAT
GATGAGTCCCCTTCTTCCTTCTTCTGCAGCTTCTGCCAAGAGCAGCAGCA
GTGGTGGTGATGGTGGGCTCCTCACTCGCTACTCCCAACATCAGATACAC
CCACAACAGCAGCCGCCGTCGCTGCAGCTGCAGCAGCATCAGCAACAAGG
CGAAAGGATGTGGGATCTGATGGCAGGCGAAGAGGGAGAGGAGGACGAGA
TGGAGGAAGAGGAAGAGGACGAGGTCAGGGTGGTGGTAGACGCCGCGAGT
ATGTTACCGGTATTGGGGAAGAAGAAGAGAAGGACGAGGAAGGAGGGGAG
GGCGAGCAGAAGGTCGATTACGATGGCCTCGGCGAAGTCGGGAATGGTGG
TGTACGAGGACGAGGAAGGGAGGGAGGAAGAGGAGGGGGAAGGGAACATG
GTGTCTGGCTTCAGGCTTGCCGAGGAGGAAGAGGAAGAGATGGAGGGAGG
GAGGGATGAAGTGGCCGAGGAAATGATGCTTGAGAATAAGGAGAACAACA
ACAGGAACACCAGCCTCCCTGTATCTGCCTTGCTGCCCCAGCATGATGGA
GGGGGAAGGAAGGCCAAGAAGGGCAACAGCAGCAGCAGCCGCCTCAAGAA
GCCCTCTGCTGCTGGTGTTGCCCGTCGCATCCCCTCCTTGGCCGATGCCG
GGGTCTCCCCGGACTACCCTGTCGCGGTCATGACCAAGAAGAGCAGCAGC
AGTAGCAGCAACGACGACAGCAGCAGCAGCAGCAGCAGCAACCGCAGAGC
TACCTCCATAATCGCCGCCACGGCCGCCGCCGCCCGCCGCAGTAGCACCG
GGGCCATGCTTAACGCTCCTTCCTCCCTCGCCTCCTCCTCTATAGCCAAG
AAGAGCATCCCCTCCCACATGAACCACAACCACAAGAAGCGCGTCGACTG
GTCCAAAGGTGAGCCGGCTCAGCGGATGCACCAAGCTATCACGGACTGCA
CAGAGATCACCCAACGGGGCGAAAGTAGCAGTGGATGCAAGAGCTGGAGG
GGCGTGGCACGGATGTACGGCATCAGTTGGGCGGTGCTCTACCCTAGGCT
ATCGGGGAAAATCGCCGTCAACGCCCCCCTCGGTGGGCGGGTCGTTGGAG
GGGGAGGAGGGAAGGAGGGGGGGAGGGAGGGGCTGAGCCATGACGTGGAA
GTGAAGCTCTTTCAGCACTGCTGCACCATGGCCAAGAGGGGGCAAGGATT
GGGAGGGTGGAGAGACCTCAAGCAACTCGCCGGCAAATGGGGGGAAAAGG
CTGCTGCGGCTGCCAAAAGCGGCAACGGCAGCAGCAGCAAAGCGGGCCTG
CCTTCCCTCCCGACCTCCTCATCGGCGGTGGCGGTGGACGCATGGGCCCA
GAAATTCCGGGTTCGTTTTCCTAGCTTGAAGACTTTCTACTGTCCGCCTG
AAGGAGGAGAAAGAGAAGGAGGGAGGGAGGGGGAGGGGTACTACGTGTTG
TGTACGCGGGATGAGGCAGGAAAGGATGCCAGGGAGGTGACGGAGGAGGA
AGAAGAGGAGGAGGAAGGGAGAGAGGACAAGAGGAAGGACCGGGAATTGT
GTTCAGTCGTAGATGAGGGATGGAGGGAGGGCAAGGAGTGTAGCAGGACG
ACGGCGGGCTTCGGCGCCAGCAAGAGTGACGGGAGGGACAGGAGAAAGAG
GGGAGGGAACACGACGTGTTAG back to top
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