jgi.p|Nanoce1779_2|604586, mRNA_8943 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|604586
Unique NamemRNA_8943
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length494
Alignment locationscaffold_29:279921..280414 +

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Properties
Property NameValue
TranscriptId604672
TrackFilteredModels2
ProteinId604586
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:279921..280414 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604586gene_8943Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|604586mRNA_8943-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8943CDS_8943Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8943 ID=mRNA_8943|Name=jgi.p|Nanoce1779_2|604586|organism=Nannochloropsis oceanica|type=mRNA|length=494bp
GCCTCCTTAACTTAAATTTGTCCAAGCCAACACAACATTGACATGGCTGG
TCCCAAAGCATGCGCGCGGGTAGACTTATGTGCGATAATTTTGTTTCTGT
CCATATTCCTACAAGAGAGACCAGCGACTTACGAGTTTTTGTCTGAGACT
CTACAGCCTTCTCTCCCTGAGACTCTTTGTTCCCAGCGGTTCGAAGCGAA
GAAGGAGCACATGGCCATCTTTTGCCCTCGCCCCCACAAGCAGCGCCGCG
GAGGCATCAGTTTTGGTCAGAACCATATGTTCTAGTTGTCAGCAAGCTTA
CAAGCAGGCGACATCGACTGCGTGGAACACAAGTGCCACGGGTCAACTAG
TTTTGCATGCATAAATCAGTAGCTTCTGTCTAATCATAGCGCACACCTCA
TCTTCTGCACAGCCCACTCAACATACACCTGTCGAAGACGACGCCAGCCA
CGGCGGCGACGACGAAAGGCACGACGACGACGACGAAAACCGCG
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protein sequence of jgi.p|Nanoce1779_2|604586

>mRNA_8943-protein ID=mRNA_8943-protein|Name=jgi.p|Nanoce1779_2|604586|organism=Nannochloropsis oceanica|type=polypeptide|length=81bp
MAGPKACARVDLCAIILFLSIFLQERPATYEFLSETLQPSLPETLCSQRF
EAKKEHMAIFCPRPHKQRRGGISFGQNHMF*
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mRNA from alignment at scaffold_29:279921..280414+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8943 ID=mRNA_8943|Name=jgi.p|Nanoce1779_2|604586|organism=Nannochloropsis oceanica|type=mRNA|length=494bp|location=Sequence derived from alignment at scaffold_29:279921..280414+ (Nannochloropsis oceanica)
GCCTCCTTAACTTAAATTTGTCCAAGCCAACACAACATTGACATGGCTGG
TCCCAAAGCATGCGCGCGGGTAGACTTATGTGCGATAATTTTGTTTCTGT
CCATATTCCTACAAGAGAGACCAGCGACTTACGAGTTTTTGTCTGAGACT
CTACAGCCTTCTCTCCCTGAGACTCTTTGTTCCCAGCGGTTCGAAGCGAA
GAAGGAGCACATGGCCATCTTTTGCCCTCGCCCCCACAAGCAGCGCCGCG
GAGGCATCAGTTTTGGTCAGAACCATATGTTCTAGTTGTCAGCAAGCTTA
CAAGCAGGCGACATCGACTGCGTGGAACACAAGTGCCACGGGTCAACTAG
TTTTGCATGCATAAATCAGTAGCTTCTGTCTAATCATAGCGCACACCTCA
TCTTCTGCACAGCCCACTCAACATACACCTGTCGAAGACGACGCCAGCCA
CGGCGGCGACGACGAAAGGCACGACGACGACGACGAAAACCGCG
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Coding sequence (CDS) from alignment at scaffold_29:279921..280414+

>mRNA_8943 ID=mRNA_8943|Name=jgi.p|Nanoce1779_2|604586|organism=Nannochloropsis oceanica|type=CDS|length=243bp|location=Sequence derived from alignment at scaffold_29:279921..280414+ (Nannochloropsis oceanica)
ATGGCTGGTCCCAAAGCATGCGCGCGGGTAGACTTATGTGCGATAATTTT
GTTTCTGTCCATATTCCTACAAGAGAGACCAGCGACTTACGAGTTTTTGT
CTGAGACTCTACAGCCTTCTCTCCCTGAGACTCTTTGTTCCCAGCGGTTC
GAAGCGAAGAAGGAGCACATGGCCATCTTTTGCCCTCGCCCCCACAAGCA
GCGCCGCGGAGGCATCAGTTTTGGTCAGAACCATATGTTCTAG
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Synonyms
Publications