jgi.p|Nanoce1779_2|604564, mRNA_8938 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604564
Unique Name	mRNA_8938
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1344
Alignment location	scaffold_29:265617..266960 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	604650
Track	FilteredModels2
ProteinId	604564

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:265617..266960 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604564	gene_8938	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604564	mRNA_8938-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8938	CDS_8938	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:265617..266960+
coding sequence from alignment at scaffold_29:265617..266960+

mRNA sequence

>mRNA_8938 ID=mRNA_8938|Name=jgi.p|Nanoce1779_2|604564|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTTTCCTCCTCC
TCCTCTTTCTCTTCCTCCCCGCTGCTGCTCGAGCCCCTCCTCTCCTCTTA
CAAACACAGACAATGAGTTCCACTTTCTCTCTCTCCTTCTCTCCCTATCC
CTTACTGTGGTTCAACCCCCAACCCCTCGCTTCATTTCCTTTAAATTTAT
TTATTGTATTTCTCCTTCTGCCTTTCCTTTCTTCGTTTATTTGCTTTCGC
TCTTCATGGCCCCTTCCCCCCTTCTCCTCCTCCTCTCTCGCAACCACTCC
CTTTCCATCGTTGGTGGGAACCGTCCTCTCTCTCTCACTCGAAGTACCAA
AAATAAACATAAATCAATATTCCATAAATCAGTGAATCAACAATTTATAA
ATCAGTCATATAAATATATATTTCAATAAATAAATAAATCGGTGCGTGCC
GCCGGGCTAAAAAAATGTCGGTCCCTGGATGAATGAGAAAAAGAGATTTC
TCCCTCTCATCCTCAAGAAGCATACCTCCCATCAAGCCACCGCAGAAGAC
ACGTCACTCTCTCGTGGTGTTTCTCGCTCTCCCTCTCTCTAACTCTCTCC
AGGTGTTTCTCGCACTCTCTTTTTCACTTCAGCTTACAACCTGCTCCTGG
GTTGCCCCCTCGACCTGGAGCATGTGAAGGCACCTGCACCTTCCATCAAG
CCAATTTCGAAGACTCACCACTACCACACGTACGTAAATATATATAATAT
ATATATGTATTCATGAATATAGAGTGATCACCCATACTGCTCCCTCTTCC
TGTATTCTTCTCCCCCCTCCCTCCCCTCCTCTACTCGCTCATTCTCCACC
GATAGCCTCCACCTCTTCTGCTCCGTATAAACGTACTGACACACACCTTC
ATATTCTCTCTCCTCACCTCCCCTTCTCCTTCCTCCCTACATCTTGATCC
TCTTGTCCACCAATGCCGCTGCTGCTGCCGCTGCTGCTCTCAGGTTGCCA
CCCCCACTAGGGGCCCCCAAGGCGAGCTGCACGGCTAGGCCCTCCATCCC
TCCCTCCCCTCCTGCCGCGTTTCCCAACAGAGACAAGAGGGCATCGACGG
CTTTGCTCTCTTCATTGGATCGTTTCTTCTTCGGTTCTACCAAGGAGGAG
GAGGCGGAGGAAGAAGGGGATGATGAGGCGGGAAGGGAGAGAGGGAGGGC
GAACGGGGTCTGGCCGAGGGCGCGATCGAGGGAGGGCAGGGGCTGGTTGT
TGCTTGACGTGTAAGTGGATTGAAAGGGAGAGAGGGAAGAGTTGGCAGCT
CCATGACTGCTGCTGCTGCTGCCGCTGCTGCTGCCGCTGCTGGT

protein sequence of jgi.p|Nanoce1779_2|604564

>mRNA_8938-protein ID=mRNA_8938-protein|Name=jgi.p|Nanoce1779_2|604564|organism=Nannochloropsis oceanica|type=polypeptide|length=91bp
MSSTFSLSFSPYPLLWFNPQPLASFPLNLFIVFLLLPFLSSFICFRSSWP
LPPFSSSSLATTPFPSLVGTVLSLSLEVPKININQYSINQ*

mRNA from alignment at scaffold_29:265617..266960+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8938 ID=mRNA_8938|Name=jgi.p|Nanoce1779_2|604564|organism=Nannochloropsis oceanica|type=mRNA|length=1344bp|location=Sequence derived from alignment at scaffold_29:265617..266960+ (Nannochloropsis oceanica)
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTTTTCCTCCTCC
TCCTCTTTCTCTTCCTCCCCGCTGCTGCTCGAGCCCCTCCTCTCCTCTTA
CAAACACAGACAATGAGTTCCACTTTCTCTCTCTCCTTCTCTCCCTATCC
CTTACTGTGGTTCAACCCCCAACCCCTCGCTTCATTTCCTTTAAATTTAT
TTATTGTATTTCTCCTTCTGCCTTTCCTTTCTTCGTTTATTTGCTTTCGC
TCTTCATGGCCCCTTCCCCCCTTCTCCTCCTCCTCTCTCGCAACCACTCC
CTTTCCATCGTTGGTGGGAACCGTCCTCTCTCTCTCACTCGAAGTACCAA
AAATAAACATAAATCAATATTCCATAAATCAGTGAATCAACAATTTATAA
ATCAGTCATATAAATATATATTTCAATAAATAAATAAATCGGTGCGTGCC
GCCGGGCTAAAAAAATGTCGGTCCCTGGATGAATGAGAAAAAGAGATTTC
TCCCTCTCATCCTCAAGAAGCATACCTCCCATCAAGCCACCGCAGAAGAC
ACGTCACTCTCTCGTGGTGTTTCTCGCTCTCCCTCTCTCTAACTCTCTCC
AGGTGTTTCTCGCACTCTCTTTTTCACTTCAGCTTACAACCTGCTCCTGG
GTTGCCCCCTCGACCTGGAGCATGTGAAGGCACCTGCACCTTCCATCAAG
CCAATTTCGAAGACTCACCACTACCACACGTACGTAAATATATATAATAT
ATATATGTATTCATGAATATAGAGTGATCACCCATACTGCTCCCTCTTCC
TGTATTCTTCTCCCCCCTCCCTCCCCTCCTCTACTCGCTCATTCTCCACC
GATAGCCTCCACCTCTTCTGCTCCGTATAAACGTACTGACACACACCTTC
ATATTCTCTCTCCTCACCTCCCCTTCTCCTTCCTCCCTACATCTTGATCC
TCTTGTCCACCAATGCCGCTGCTGCTGCCGCTGCTGCTCTCAGGTTGCCA
CCCCCACTAGGGGCCCCCAAGGCGAGCTGCACGGCTAGGCCCTCCATCCC
TCCCTCCCCTCCTGCCGCGTTTCCCAACAGAGACAAGAGGGCATCGACGG
CTTTGCTCTCTTCATTGGATCGTTTCTTCTTCGGTTCTACCAAGGAGGAG
GAGGCGGAGGAAGAAGGGGATGATGAGGCGGGAAGGGAGAGAGGGAGGGC
GAACGGGGTCTGGCCGAGGGCGCGATCGAGGGAGGGCAGGGGCTGGTTGT
TGCTTGACGTGTAAGTGGATTGAAAGGGAGAGAGGGAAGAGTTGGCAGCT
CCATGACTGCTGCTGCTGCTGCCGCTGCTGCTGCCGCTGCTGGT

Coding sequence (CDS) from alignment at scaffold_29:265617..266960+

>mRNA_8938 ID=mRNA_8938|Name=jgi.p|Nanoce1779_2|604564|organism=Nannochloropsis oceanica|type=CDS|length=273bp|location=Sequence derived from alignment at scaffold_29:265617..266960+ (Nannochloropsis oceanica)
ATGAGTTCCACTTTCTCTCTCTCCTTCTCTCCCTATCCCTTACTGTGGTT
CAACCCCCAACCCCTCGCTTCATTTCCTTTAAATTTATTTATTGTATTTC
TCCTTCTGCCTTTCCTTTCTTCGTTTATTTGCTTTCGCTCTTCATGGCCC
CTTCCCCCCTTCTCCTCCTCCTCTCTCGCAACCACTCCCTTTCCATCGTT
GGTGGGAACCGTCCTCTCTCTCTCACTCGAAGTACCAAAAATAAACATAA
ATCAATATTCCATAAATCAGTGA

Synonyms

Publications