jgi.p|Nanoce1779_2|604562, mRNA_8937 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|604562
Unique Name	mRNA_8937
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	761
Alignment location	scaffold_29:263240..264867 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	604648
Track	FilteredModels2
ProteinId	604562

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_29	supercontig	scaffold_29:263240..264867 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604562	gene_8937	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|604562	mRNA_8937-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_8937	CDS_8937	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_29:263240..264867+
coding sequence from alignment at scaffold_29:263240..264867+

mRNA sequence

>mRNA_8937 ID=mRNA_8937|Name=jgi.p|Nanoce1779_2|604562|organism=Nannochloropsis oceanica|type=mRNA|length=761bp
ACAGGACGATGAAGCCCGTCTGCCTTCTCTCCCTCCTGGTCGCCGGGGCG
GCCGCCTTCCACATGCCCCTCTCCAGTAGACAACCACATACGAAGCTCAA
CGCTGGAAGTGCCTATGTGTCCACGCGCACGGGGAAGGAAGAGCGGTTAG
AGCAGTACAAGGGCTGGTTGGAGGGGGCGGAGATGATCTTTGCCATCCCC
GCCCAGGGCATGACTGTGAAACAAGTGGCCCAGCTGCGTAAAGCGGTGCC
GCAGGATACCAAGGTGCGTGTGGCCAAGAATACGATTTTGAAGCGGGCCA
TTGAGGGGAACAGCCAGTGGGAGGTGGTGGGGGATAAGCTGGAGTCGAGC
AACATGTGGTTTTTCGTGGGCAGTGACATGAAGGGAACATTCGATGGGTA
CGAAGCTTTTTTGAAGGAGAATAAGGCCCTCAAGGAGAGCCACACATTCC
GATTCGGTGCCATGGACGGCACCCTGCTTGATACGGAGGGCGTGCAGAAG
ATCTCCAAACTTCCGGGTAAGTTAGACCTGTACACCAAGCTGGCGTTCGC
GCTCAAGCAGCCGGGGACGCGCCTGGGCAAATCCCTCAAGGCGATTCCTA
CTAAACTCACAAGGGCGATCAAGTTGTCCTTCGAGGAGGGCGCGGGGGAG
GGAGAGGCACCCGCTGCGGAGCCCGCAGCAGAGTAAAAGGGAGGGAGGAG
GGAGGAGAAGATGTTGGAGGGGAAAGAGAGAGAGACAGGGTATACATTTA
TATATGTGTGA

protein sequence of jgi.p|Nanoce1779_2|604562

>mRNA_8937-protein ID=mRNA_8937-protein|Name=jgi.p|Nanoce1779_2|604562|organism=Nannochloropsis oceanica|type=polypeptide|length=226bp
MKPVCLLSLLVAGAAAFHMPLSSRQPHTKLNAGSAYVSTRTGKEERLEQY
KGWLEGAEMIFAIPAQGMTVKQVAQLRKAVPQDTKVRVAKNTILKRAIEG
NSQWEVVGDKLESSNMWFFVGSDMKGTFDGYEAFLKENKALKESHTFRFG
AMDGTLLDTEGVQKISKLPGKLDLYTKLAFALKQPGTRLGKSLKAIPTKL
TRAIKLSFEEGAGEGEAPAAEPAAE*

mRNA from alignment at scaffold_29:263240..264867+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_8937 ID=mRNA_8937|Name=jgi.p|Nanoce1779_2|604562|organism=Nannochloropsis oceanica|type=mRNA|length=1628bp|location=Sequence derived from alignment at scaffold_29:263240..264867+ (Nannochloropsis oceanica)
ACAGGACGATGAAGCCCGTCTGCCTTCTCTCCCTCCTGGTCGCCGGGGCG
GCCGCCTTCCACATGCGTAAGTGGGTCTCGCCGTGGAATGGGAGGGGTTT
ACTGATTCGATGTGATGGACATGATCGTGCGGGAAGCAGCGTGTGTTACG
ACCCTGCTGGCCTTATCTATTTATACTCTTCTTTACTTGGACTATTTCTG
AGTGCGGATGTCACCTCTTTCCATCCCCGACGGCTGCGCTCACCGTCCAC
CTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCTCCATTTCATC
CCCCGTGCACACCACAGCCCTCTCCAGTAGACAACCACATACGAAGCTCA
ACGCTGGAAGTGCCTATGTGTCCACGCGCACGGGGAAGGAAGAGCGGTTA
GAGCAGTACAAGGGCTGGTTGGAGGGGGCGGAGATGATCTTTGCCATCCC
CGCCCAGGGCATGACTGTGAAACAAGTGGCCCAGCTGCGTAAAGCGGTGC
CGCAGGATACCAAGGTAGGTAGGTGGGTAGGGAGGAACAGAGGGAGGGAG
AGAAGGAGAGGTTTGAGGGCTCTGGGAAGTGGAGTTGAGTGGTGATAAGT
AGAAAAGGAGGGATGGAGAAGAAGGCAAGAGGCGAGTGCAGATGTGTCTT
ACTCCCTCCCTCCCTTCCGCCCTCCCTTCCGCCCTCCCGCCCTCCTTATC
TCTTTCTCTCCCTTGTGCGTAGGTGCGTGTGGCCAAGAATACGATTTTGA
AGCGGGCCATTGAGGGGAACAGCCAGTGGGAGGTGGTGGGGGATAAGCTG
GAGTCGAGCAACATGTGGTTTTTCGTGGGCAGTGACATGAAGGTAGGGAG
GGAGGGAGGGAAGGGTGGTGGTGTGTTGGAGAGCGGTGGGTGTGGGAGGG
GTGAAGGGGGTTTGAGCAGTGAAGCCTACGAAGTGGAGAAGGCGATGAAG
AGGGGTAGAGAGTGCTCTTGCCGAGGTCTGGTTCTTACACGCCCTTCCCT
CCCTCCCTCCCTCCCTCCTTCCTTCCTTTTCCTCTTTGTTCCTCTTCTTT
TCAGGGAACATTCGATGGGTACGAAGCTTTTTTGAAGGAGAATAAGGCCC
TCAAGGAGAGCCACACATTCCGATTCGGTGCCATGGACGGCACCCTGCTT
GATACGGAGGGCGTGCAGAAGGTGAGTGAGGGAGGGAGGGAGGGAGGGAG
GGGGGGAGGGTTGAAAGAGAGGAAGGGAAGAAAAAAAAAGACGGAACGCG
CGATGGAACGCTTGTTGCTCACTAACCTCATAACCTCAATCTCACCCTCC
CTCGCCCCCTCCCTCCCTCCCTCGCCCCCTCCCTCCCTCCCTCCCTCCCT
CCCTTTCTCCCTCCCAGATCTCCAAACTTCCGGGTAAGTTAGACCTGTAC
ACCAAGCTGGCGTTCGCGCTCAAGCAGCCGGGGACGCGCCTGGGCAAATC
CCTCAAGGCGATTCCTACTAAACTCACAAGGGCGATCAAGTTGTCCTTCG
AGGAGGGCGCGGGGGAGGGAGAGGCACCCGCTGCGGAGCCCGCAGCAGAG
TAAAAGGGAGGGAGGAGGGAGGAGAAGATGTTGGAGGGGAAAGAGAGAGA
GACAGGGTATACATTTATATATGTGTGA

Coding sequence (CDS) from alignment at scaffold_29:263240..264867+

>mRNA_8937 ID=mRNA_8937|Name=jgi.p|Nanoce1779_2|604562|organism=Nannochloropsis oceanica|type=CDS|length=3390bp|location=Sequence derived from alignment at scaffold_29:263240..264867+ (Nannochloropsis oceanica)
ATGAAGCCCGTCTGCCTTCTCTCCCTCCTGGTCGCCGGGGCGGCCGCCTT
CCACATGCCCCTCTCCAGTAGACAACCACATACGAAGCTCAACGCTGGAA
GTGCCTATGTGTCCACGCGCACGGGGAAGGAAGAGCGGTTAGAGCAGTAC
AAGGGCTGGTTGGAGGGGGCGGAGATGATCTTTGCCATCCCCGCCCAGGG
CATGACTGTGAAACAAGTGGCCCAGCTGCGTAAAGCGGTGCCGCAGGATA
CCAAGGTGCGTGTGGCCAAGAATACGATTTTGAAGCGGGCCATTGAGGGG
AACAGCCAGTGGGAGGTGGTGGGGGATAAGCTGGAGTCGAGCAACATGTG
GTTTTTCGTGGGCAGTGACATGAAGGGAACATTCGATGGGTACGAAGCTT
TTTTGAAGGAGAATAAGGCCCTCAAGGAGAGCCACACATTCCGATTCGGT
GCCATGGACGGCACCCTGCTTGATACGGAGGGCGTGCAGAAGATCTCCAA
ACTTCCGGGTAAGTTAGACCTGTACACCAAGCTGGCGTTCGCGCTCAAGC
AGCCGGGGACGCGCCTGGGCAAATCCCTCAAGGCGATTCCTACTAAACTC
ACAAGGGCGATCAAGTTGTCCTTCGAGGAGGGCGCGGGGGAGGGAGAGGC
ACCCGCTGCGGAGCCCGCAGCAGAGTAAATGAAGCCCGTCTGCCTTCTCT
CCCTCCTGGTCGCCGGGGCGGCCGCCTTCCACATGCCCCTCTCCAGTAGA
CAACCACATACGAAGCTCAACGCTGGAAGTGCCTATGTGTCCACGCGCAC
GGGGAAGGAAGAGCGGTTAGAGCAGTACAAGGGCTGGTTGGAGGGGGCGG
AGATGATCTTTGCCATCCCCGCCCAGGGCATGACTGTGAAACAAGTGGCC
CAGCTGCGTAAAGCGGTGCCGCAGGATACCAAGGTGCGTGTGGCCAAGAA
TACGATTTTGAAGCGGGCCATTGAGGGGAACAGCCAGTGGGAGGTGGTGG
GGGATAAGCTGGAGTCGAGCAACATGTGGTTTTTCGTGGGCAGTGACATG
AAGGGAACATTCGATGGGTACGAAGCTTTTTTGAAGGAGAATAAGGCCCT
CAAGGAGAGCCACACATTCCGATTCGGTGCCATGGACGGCACCCTGCTTG
ATACGGAGGGCGTGCAGAAGATCTCCAAACTTCCGGGTAAGTTAGACCTG
TACACCAAGCTGGCGTTCGCGCTCAAGCAGCCGGGGACGCGCCTGGGCAA
ATCCCTCAAGGCGATTCCTACTAAACTCACAAGGGCGATCAAGTTGTCCT
TCGAGGAGGGCGCGGGGGAGGGAGAGGCACCCGCTGCGGAGCCCGCAGCA
GAGTAAATGAAGCCCGTCTGCCTTCTCTCCCTCCTGGTCGCCGGGGCGGC
CGCCTTCCACATGCCCCTCTCCAGTAGACAACCACATACGAAGCTCAACG
CTGGAAGTGCCTATGTGTCCACGCGCACGGGGAAGGAAGAGCGGTTAGAG
CAGTACAAGGGCTGGTTGGAGGGGGCGGAGATGATCTTTGCCATCCCCGC
CCAGGGCATGACTGTGAAACAAGTGGCCCAGCTGCGTAAAGCGGTGCCGC
AGGATACCAAGGTGCGTGTGGCCAAGAATACGATTTTGAAGCGGGCCATT
GAGGGGAACAGCCAGTGGGAGGTGGTGGGGGATAAGCTGGAGTCGAGCAA
CATGTGGTTTTTCGTGGGCAGTGACATGAAGGGAACATTCGATGGGTACG
AAGCTTTTTTGAAGGAGAATAAGGCCCTCAAGGAGAGCCACACATTCCGA
TTCGGTGCCATGGACGGCACCCTGCTTGATACGGAGGGCGTGCAGAAGAT
CTCCAAACTTCCGGGTAAGTTAGACCTGTACACCAAGCTGGCGTTCGCGC
TCAAGCAGCCGGGGACGCGCCTGGGCAAATCCCTCAAGGCGATTCCTACT
AAACTCACAAGGGCGATCAAGTTGTCCTTCGAGGAGGGCGCGGGGGAGGG
AGAGGCACCCGCTGCGGAGCCCGCAGCAGAGTAAATGAAGCCCGTCTGCC
TTCTCTCCCTCCTGGTCGCCGGGGCGGCCGCCTTCCACATGCCCCTCTCC
AGTAGACAACCACATACGAAGCTCAACGCTGGAAGTGCCTATGTGTCCAC
GCGCACGGGGAAGGAAGAGCGGTTAGAGCAGTACAAGGGCTGGTTGGAGG
GGGCGGAGATGATCTTTGCCATCCCCGCCCAGGGCATGACTGTGAAACAA
GTGGCCCAGCTGCGTAAAGCGGTGCCGCAGGATACCAAGGTGCGTGTGGC
CAAGAATACGATTTTGAAGCGGGCCATTGAGGGGAACAGCCAGTGGGAGG
TGGTGGGGGATAAGCTGGAGTCGAGCAACATGTGGTTTTTCGTGGGCAGT
GACATGAAGGGAACATTCGATGGGTACGAAGCTTTTTTGAAGGAGAATAA
GGCCCTCAAGGAGAGCCACACATTCCGATTCGGTGCCATGGACGGCACCC
TGCTTGATACGGAGGGCGTGCAGAAGATCTCCAAACTTCCGGGTAAGTTA
GACCTGTACACCAAGCTGGCGTTCGCGCTCAAGCAGCCGGGGACGCGCCT
GGGCAAATCCCTCAAGGCGATTCCTACTAAACTCACAAGGGCGATCAAGT
TGTCCTTCGAGGAGGGCGCGGGGGAGGGAGAGGCACCCGCTGCGGAGCCC
GCAGCAGAGTAAATGAAGCCCGTCTGCCTTCTCTCCCTCCTGGTCGCCGG
GGCGGCCGCCTTCCACATGCCCCTCTCCAGTAGACAACCACATACGAAGC
TCAACGCTGGAAGTGCCTATGTGTCCACGCGCACGGGGAAGGAAGAGCGG
TTAGAGCAGTACAAGGGCTGGTTGGAGGGGGCGGAGATGATCTTTGCCAT
CCCCGCCCAGGGCATGACTGTGAAACAAGTGGCCCAGCTGCGTAAAGCGG
TGCCGCAGGATACCAAGGTGCGTGTGGCCAAGAATACGATTTTGAAGCGG
GCCATTGAGGGGAACAGCCAGTGGGAGGTGGTGGGGGATAAGCTGGAGTC
GAGCAACATGTGGTTTTTCGTGGGCAGTGACATGAAGGGAACATTCGATG
GGTACGAAGCTTTTTTGAAGGAGAATAAGGCCCTCAAGGAGAGCCACACA
TTCCGATTCGGTGCCATGGACGGCACCCTGCTTGATACGGAGGGCGTGCA
GAAGATCTCCAAACTTCCGGGTAAGTTAGACCTGTACACCAAGCTGGCGT
TCGCGCTCAAGCAGCCGGGGACGCGCCTGGGCAAATCCCTCAAGGCGATT
CCTACTAAACTCACAAGGGCGATCAAGTTGTCCTTCGAGGAGGGCGCGGG
GGAGGGAGAGGCACCCGCTGCGGAGCCCGCAGCAGAGTAA

Synonyms

Publications